Wall clock time and date at job start Mon Mar 30 2020 00:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 6 6 O 1.21280 * 120.00613 * 5.00509 * 5 3 2 7 7 N 1.34776 * 119.99644 * 184.99578 * 5 3 2 8 8 C 1.46502 * 120.00249 * 179.97438 * 7 5 3 9 9 C 1.52994 * 109.47437 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47199 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99771 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00007 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99991 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47395 * 60.00357 * 14 12 10 16 16 H 1.48504 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47191 * 300.00157 * 14 12 10 18 18 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 19 19 C 1.39869 * 126.04349 * 324.69000 * 18 3 2 20 20 N 1.30834 * 108.20252 * 179.82091 * 19 18 3 21 21 N 1.40083 * 108.20869 * 0.43730 * 20 19 18 22 22 C 1.46503 * 126.04336 * 179.74163 * 21 20 19 23 23 C 1.34957 * 107.92342 * 359.71981 * 21 20 19 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 27 27 H 0.97007 * 120.00221 * 0.02562 * 7 5 3 28 28 H 1.08996 * 109.47430 * 300.01234 * 8 7 5 29 29 H 1.09003 * 109.46551 * 60.00539 * 8 7 5 30 30 H 1.09001 * 109.47532 * 300.00378 * 9 8 7 31 31 H 1.09003 * 109.47015 * 60.00572 * 9 8 7 32 32 H 0.97001 * 119.99875 * 179.97438 * 13 12 10 33 33 H 1.08001 * 125.89731 * 359.97438 * 19 18 3 34 34 H 1.09006 * 109.46821 * 269.97458 * 22 21 20 35 35 H 1.09002 * 109.46611 * 29.97131 * 22 21 20 36 36 H 1.08998 * 109.47340 * 149.97848 * 22 21 20 37 37 H 1.07999 * 126.12730 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 3.3387 1.2637 0.7104 6 8 3.7898 0.2044 1.0913 7 7 4.0256 2.4038 0.9223 8 6 5.3167 2.3635 1.6134 9 6 5.8808 3.7814 1.7235 10 6 7.2092 3.7398 2.4339 11 1 7.6111 2.7963 2.7725 12 6 7.9119 4.9061 2.6506 13 7 7.4227 6.0549 2.2378 14 14 9.5589 4.8544 3.5305 15 1 10.5036 4.0037 2.7631 16 1 10.1063 6.2306 3.6375 17 1 9.3757 4.2878 4.8909 18 6 2.2146 1.7643 -1.4208 19 6 2.5693 0.9541 -2.5044 20 7 2.6482 1.7086 -3.5703 21 7 2.3555 3.0265 -3.1964 22 6 2.3371 4.1909 -4.0853 23 6 2.0929 3.0340 -1.8726 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 3.6647 3.2512 0.6179 28 1 5.1815 1.9479 2.6119 29 1 6.0105 1.7388 1.0508 30 1 6.0159 4.1973 0.7251 31 1 5.1868 4.4058 2.2864 32 1 7.9169 6.8755 2.3905 33 1 2.7451 -0.1109 -2.4679 34 1 3.3277 4.6453 -4.1092 35 1 2.0574 3.8760 -5.0906 36 1 1.6129 4.9176 -3.7172 37 1 1.8327 3.8986 -1.2800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337044653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:19 Heat of formation + Delta-G solvation = -5.893472 kcal Electronic energy + Delta-G solvation = -20071.562229 eV Core-core repulsion = 16851.062646 eV Total energy + Delta-G solvation = -3220.499583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39827 -39.28403 -37.36270 -34.77101 -33.46726 -32.84283 -31.41485 -29.56972 -28.26231 -26.59690 -25.61636 -24.23000 -21.27268 -21.19721 -20.73660 -19.90116 -17.46901 -16.95215 -16.48004 -16.23451 -15.52784 -15.42696 -14.79168 -14.57179 -14.49754 -14.38966 -13.96837 -13.40655 -13.01287 -12.98531 -12.76571 -12.55149 -12.29173 -12.19962 -11.42630 -11.20610 -11.01319 -10.78271 -10.65735 -10.30915 -10.02491 -9.74104 -9.52278 -9.44210 -9.22645 -8.53253 -8.44608 -8.31408 -6.09975 -4.12394 1.73911 2.39191 2.62551 3.10080 3.23097 3.31482 3.34949 3.39422 4.24395 4.39702 4.44308 4.69204 4.87860 4.95692 5.02978 5.14941 5.19992 5.23052 5.27330 5.35614 5.36913 5.59694 5.68511 5.79228 6.34665 6.37590 6.53019 6.75807 6.82238 6.93251 7.06156 7.51671 7.59766 7.61536 7.88655 8.04551 8.28434 8.70844 8.93404 9.52399 11.01650 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.004448 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.846811 B = 6294.053638 C = 7302.311360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.155 3.845 4 H 0.087 0.913 5 C 0.513 3.487 6 O -0.529 6.529 7 N -0.717 5.717 8 C 0.124 3.876 9 C 0.014 3.986 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.266 4.266 19 C 0.081 3.919 20 N -0.299 5.299 21 N -0.373 5.373 22 C 0.101 3.899 23 C 0.071 3.929 24 H 0.088 0.912 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.394 0.606 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.186 0.814 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.308 -2.850 -9.815 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.092 3.908 4 H 0.105 0.895 5 C 0.297 3.703 6 O -0.405 6.405 7 N -0.369 5.369 8 C 0.002 3.998 9 C -0.023 4.023 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.278 4.278 19 C -0.105 4.105 20 N -0.120 5.120 21 N -0.155 5.155 22 C -0.041 4.041 23 C -0.076 4.076 24 H 0.106 0.894 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.227 0.773 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.203 0.797 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.575 -3.434 -10.908 19.322 hybrid contribution 0.387 0.872 1.142 1.488 sum -15.189 -2.562 -9.765 18.238 Atomic orbital electron populations 1.22836 0.81016 1.02876 0.99874 1.88034 1.19318 1.24875 1.94630 1.19961 0.93897 0.86303 0.90638 0.89502 1.20147 0.85930 0.84634 0.79612 1.90687 1.69276 1.29800 1.50766 1.46150 1.22811 1.08496 1.59400 1.21722 0.81310 1.01451 0.95355 1.19307 0.96160 0.89176 0.97692 1.21026 1.03878 0.93558 1.37520 0.92264 1.24983 0.98155 0.95389 0.95677 1.69944 1.38817 0.98019 1.46676 0.86572 0.83693 0.77012 0.80272 1.20103 1.21259 1.20074 1.20220 1.17461 0.93317 0.96809 1.23716 0.97200 1.00367 0.89255 1.77407 1.23703 0.87338 1.23588 1.48490 1.53162 1.07233 1.06567 1.21895 1.03649 0.84170 0.94340 1.22304 1.00807 0.98886 0.85649 0.89393 0.94023 0.93971 0.77275 0.92456 0.92579 0.96074 0.95962 0.92838 0.79750 0.90346 0.89342 0.89382 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.81 101.05 1.09 1.39 16 2 O -0.35 -5.01 9.60 -55.09 -0.53 -5.54 16 3 C 0.16 2.11 2.96 -29.04 -0.09 2.02 16 4 H 0.09 0.92 7.79 -51.93 -0.40 0.51 16 5 C 0.51 9.20 7.17 -10.99 -0.08 9.12 16 6 O -0.53 -11.76 16.51 -14.30 -0.24 -11.99 16 7 N -0.72 -12.72 5.51 -60.30 -0.33 -13.05 16 8 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 9 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 10 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.27 -3.43 5.05 -105.05 -0.53 -3.96 16 19 C 0.08 1.14 11.64 -17.37 -0.20 0.94 16 20 N -0.30 -4.26 12.58 30.62 0.39 -3.87 16 21 N -0.37 -4.30 4.01 -68.15 -0.27 -4.57 16 22 C 0.10 0.72 11.47 59.85 0.69 1.41 16 23 C 0.07 0.77 11.40 -17.22 -0.20 0.57 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.39 5.93 8.47 -40.82 -0.35 5.58 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -35.32 327.91 -5.58 -40.90 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.36 Total: 0.91 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 0.11 Total: 1.13 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.52 Total: -46.71 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.77 Total: -17.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.32 -5.58 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337044653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.009 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds