Wall clock time and date at job start Mon Mar 30 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 C 1.50693 * 109.47421 * 239.99483 * 2 1 3 5 5 H 1.07997 * 120.00732 * 245.46560 * 4 2 1 6 6 C 1.37880 * 120.00076 * 65.46209 * 4 2 1 7 7 N 1.31519 * 119.99668 * 9.55760 * 6 4 2 8 8 Si 1.86804 * 120.00450 * 189.56002 * 6 4 2 9 9 H 1.48501 * 109.46720 * 84.99465 * 8 6 4 10 10 H 1.48498 * 109.46915 * 204.99580 * 8 6 4 11 11 H 1.48493 * 109.46736 * 324.99413 * 8 6 4 12 12 N 1.46502 * 109.46977 * 119.99577 * 2 1 3 13 13 C 1.34776 * 120.00339 * 274.99982 * 12 2 1 14 14 O 1.21285 * 119.99799 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00385 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47402 * 180.02562 * 15 13 12 17 17 C 1.42900 * 113.99866 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.46821 * 179.97438 * 17 16 15 19 19 C 1.35311 * 126.12578 * 359.68691 * 18 17 16 20 20 C 1.39870 * 107.91988 * 179.90279 * 19 18 17 21 21 N 1.30840 * 108.20244 * 0.37053 * 20 19 18 22 22 N 1.34945 * 126.12486 * 180.02562 * 18 17 16 23 23 C 1.46500 * 126.04219 * 359.93901 * 22 18 17 24 24 H 1.09000 * 109.47571 * 183.68249 * 1 2 3 25 25 H 1.09002 * 109.47266 * 303.68351 * 1 2 3 26 26 H 1.09009 * 109.47119 * 63.67925 * 1 2 3 27 27 H 0.96998 * 119.99970 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99970 * 94.99735 * 12 2 1 29 29 H 1.08999 * 109.47388 * 59.99920 * 15 13 12 30 30 H 1.09004 * 109.47107 * 300.00696 * 15 13 12 31 31 H 1.08999 * 109.47072 * 299.99883 * 17 16 15 32 32 H 1.09000 * 109.47191 * 60.00436 * 17 16 15 33 33 H 1.07997 * 126.04342 * 0.04291 * 19 18 17 34 34 H 1.08000 * 125.90455 * 180.14054 * 20 19 18 35 35 H 1.09008 * 109.46936 * 89.99756 * 23 22 18 36 36 H 1.08988 * 109.47672 * 210.00285 * 23 22 18 37 37 H 1.09000 * 109.46943 * 330.00836 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5785 -1.6371 -1.1337 6 6 1.7946 -0.1775 -2.4796 7 7 1.2993 1.0355 -2.5936 8 14 2.1761 -1.1783 -4.0101 9 1 1.0240 -2.0612 -4.3239 10 1 2.4228 -0.2616 -5.1520 11 1 3.3845 -2.0075 -3.7708 12 7 2.0182 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8581 1.1585 2.4117 15 6 2.6487 -0.7286 3.5878 16 8 2.6963 0.1895 4.6818 17 6 3.1608 -0.3866 5.9043 18 6 3.1709 0.6654 6.9833 19 6 2.8076 1.9607 6.8380 20 6 2.9618 2.5924 8.0764 21 7 3.4093 1.7100 8.9325 22 7 3.5498 0.4858 8.2660 23 6 4.0237 -0.7680 8.8573 24 1 -0.3634 -1.0255 0.0660 25 1 -0.3634 0.5700 0.8551 26 1 -0.3634 0.4557 -0.9212 27 1 1.1324 1.4106 -3.4724 28 1 2.2489 -1.6317 1.1528 29 1 3.6478 -1.1212 3.3988 30 1 1.9758 -1.5505 3.8327 31 1 2.4983 -1.2013 6.1967 32 1 4.1706 -0.7720 5.7637 33 1 2.4581 2.4244 5.9274 34 1 2.7516 3.6303 8.2885 35 1 5.1069 -0.8322 8.7531 36 1 3.7581 -0.7946 9.9140 37 1 3.5589 -1.6100 8.3444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339891213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:48 Heat of formation + Delta-G solvation = -1.761030 kcal Electronic energy + Delta-G solvation = -19562.216360 eV Core-core repulsion = 16341.895973 eV Total energy + Delta-G solvation = -3220.320387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29994 -39.10987 -37.43275 -34.73475 -33.49942 -32.40542 -31.38144 -29.55868 -27.39049 -26.90912 -25.72218 -25.21275 -21.43358 -21.04387 -20.06719 -19.47826 -17.59550 -16.73699 -16.58301 -16.51336 -15.51101 -15.46449 -15.08242 -14.56373 -14.24536 -14.07350 -13.73101 -13.38408 -12.95259 -12.67115 -12.57264 -12.46745 -12.29426 -11.76994 -11.60457 -11.06599 -11.02767 -10.80175 -10.76834 -10.38067 -10.29092 -9.97862 -9.33790 -9.14115 -8.98821 -8.54863 -8.52278 -7.96888 -6.16117 -4.22085 1.70874 2.22360 2.81557 3.23346 3.23754 3.30982 3.31979 3.33772 4.20301 4.35933 4.36571 4.63028 4.81952 4.87080 5.01460 5.04142 5.11117 5.13871 5.17501 5.35258 5.45051 5.60899 5.73482 6.18205 6.63604 6.73613 6.79870 6.87969 6.96674 7.06575 7.39730 7.53798 7.59417 7.65234 7.83443 8.04260 8.62274 8.77642 9.09005 9.43920 10.92390 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.047713 B = 0.003074 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.700623 B = 9105.669619 C = 9425.446845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.264 3.736 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.502 3.498 14 O -0.531 6.531 15 C 0.044 3.956 16 O -0.347 6.347 17 C 0.129 3.871 18 C 0.073 3.927 19 C -0.237 4.237 20 C 0.044 3.956 21 N -0.298 5.298 22 N -0.376 5.376 23 C 0.100 3.900 24 H 0.029 0.971 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.265 0.735 28 H 0.388 0.612 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.158 0.842 34 H 0.185 0.815 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 -6.810 18.301 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.163 3.837 3 H 0.074 0.926 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.408 6.408 15 C -0.037 4.037 16 O -0.264 6.264 17 C 0.050 3.950 18 C -0.053 4.053 19 C -0.266 4.266 20 C -0.141 4.141 21 N -0.120 5.120 22 N -0.161 5.161 23 C -0.042 4.042 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.176 0.824 34 H 0.202 0.798 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.457 -5.937 19.415 20.786 hybrid contribution 0.125 -1.183 -1.692 2.068 sum 4.582 -7.119 17.723 19.641 Atomic orbital electron populations 1.22024 0.98800 0.98627 1.00645 1.18768 0.90587 0.94621 0.79734 0.92565 1.21155 1.37376 1.08708 0.90404 0.92036 1.24899 0.94958 0.94629 0.99061 1.69986 1.43666 1.13705 1.24296 0.86510 0.78695 0.79925 0.82252 1.20415 1.21147 1.19911 1.46422 1.65661 1.13547 1.10157 1.19966 0.79555 0.87776 0.84231 1.90701 1.49687 1.15724 1.84685 1.22381 1.01575 0.92511 0.87202 1.88038 1.86874 1.35000 1.16509 1.20569 0.99229 0.91954 0.83230 1.20548 1.01563 0.97084 0.86107 1.21441 1.12102 0.93018 1.00053 1.23934 0.98785 0.99662 0.91718 1.77347 1.23940 0.89897 1.20806 1.48361 1.52217 1.09180 1.06325 1.21840 1.00281 0.81507 1.00546 0.95227 0.96054 0.90814 0.92487 0.77944 0.90509 0.90616 0.91488 0.91413 0.82409 0.79795 0.90755 0.89228 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.36 37.15 0.35 -3.10 16 2 C 0.26 6.64 2.42 -69.09 -0.17 6.47 16 3 H 0.06 1.66 7.52 -51.93 -0.39 1.27 16 4 C -0.54 -14.03 8.66 -34.44 -0.30 -14.33 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.83 5.17 -17.82 -0.09 1.74 16 7 N -0.88 -24.90 12.16 55.43 0.67 -24.22 16 8 Si 0.90 20.35 29.55 -169.99 -5.02 15.32 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.71 -14.20 5.07 -54.94 -0.28 -14.48 16 13 C 0.50 9.87 7.87 -10.99 -0.09 9.79 16 14 O -0.53 -13.10 16.16 -14.36 -0.23 -13.34 16 15 C 0.04 0.59 6.42 36.00 0.23 0.82 16 16 O -0.35 -5.20 9.17 -55.14 -0.51 -5.71 16 17 C 0.13 1.38 5.90 36.01 0.21 1.59 16 18 C 0.07 0.93 6.91 -82.26 -0.57 0.36 16 19 C -0.24 -3.30 10.14 -40.01 -0.41 -3.71 16 20 C 0.04 0.56 12.03 -17.36 -0.21 0.35 16 21 N -0.30 -3.97 12.58 30.63 0.39 -3.58 16 22 N -0.38 -4.34 4.01 -63.89 -0.26 -4.60 16 23 C 0.10 0.66 11.27 59.85 0.67 1.33 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.93 6.83 -51.92 -0.35 1.57 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.39 6.43 8.53 -40.82 -0.35 6.08 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.16 2.36 7.85 -52.49 -0.41 1.95 16 34 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 36 H 0.09 0.51 8.14 -51.94 -0.42 0.09 16 37 H 0.08 0.36 7.79 -51.93 -0.40 -0.04 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -34.63 323.93 -5.97 -40.60 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.26 Total: 3.82 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.36 Total: 1.30 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.52 Total: -46.89 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.74 Total: -19.04 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.63 -5.97 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339891213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.844 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds