Wall clock time and date at job start Mon Mar 30 2020 01:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99948 * 2 1 4 4 C 1.52994 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47474 * 179.97438 * 4 3 2 6 6 N 1.31126 * 126.54861 * 89.99307 * 5 4 3 7 7 C 1.34502 * 105.61746 * 180.02562 * 6 5 4 8 8 C 1.50699 * 126.29209 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47006 * 90.00163 * 8 7 6 10 10 C 1.36932 * 119.99891 * 89.99849 * 9 8 7 11 11 H 1.08000 * 120.00641 * 216.57361 * 10 9 8 12 12 C 1.38819 * 119.99878 * 36.57415 * 10 9 8 13 13 N 1.31619 * 120.00046 * 201.94586 * 12 10 9 14 14 Si 1.86797 * 119.99933 * 21.95747 * 12 10 9 15 15 H 1.48504 * 109.46703 * 264.53236 * 14 12 10 16 16 H 1.48501 * 109.47177 * 24.52848 * 14 12 10 17 17 H 1.48492 * 109.47547 * 144.53105 * 14 12 10 18 18 C 1.46494 * 120.00136 * 270.00387 * 9 8 7 19 19 C 1.52999 * 117.50037 * 194.05553 * 18 9 8 20 20 C 1.52996 * 117.50113 * 125.43124 * 18 9 8 21 21 N 1.29953 * 107.41604 * 0.24750 * 7 6 5 22 22 O 1.21294 * 110.25447 * 359.57755 * 21 7 6 23 23 H 1.08999 * 109.46792 * 299.99865 * 1 2 3 24 24 H 1.08995 * 109.47194 * 60.00086 * 1 2 3 25 25 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46826 * 60.00157 * 3 2 1 27 27 H 1.09004 * 109.46894 * 300.00634 * 3 2 1 28 28 H 1.09006 * 109.47258 * 60.00060 * 4 3 2 29 29 H 1.08997 * 109.46916 * 300.00123 * 4 3 2 30 30 H 1.08998 * 109.46863 * 330.00057 * 8 7 6 31 31 H 1.09001 * 109.46799 * 210.00372 * 8 7 6 32 32 H 0.97001 * 120.00112 * 179.97438 * 13 12 10 33 33 H 1.09003 * 115.54876 * 339.76196 * 18 9 8 34 34 H 1.08998 * 117.49814 * 0.02562 * 19 18 9 35 35 H 1.08999 * 117.49907 * 145.01377 * 19 18 9 36 36 H 1.08995 * 117.50215 * 214.97358 * 20 18 9 37 37 H 1.09000 * 117.50202 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1485 2.5614 -0.0013 6 7 4.4665 3.2750 1.0518 7 6 4.9768 4.4227 0.5708 8 6 5.4918 5.5808 1.3861 9 7 6.9207 5.3949 1.6502 10 6 7.8492 5.8942 0.7762 11 1 8.7575 5.3437 0.5804 12 6 7.6229 7.1081 0.1419 13 7 8.2503 7.3914 -0.9799 14 14 6.4283 8.3395 0.8807 15 1 5.0945 8.1757 0.2485 16 1 6.3154 8.1039 2.3426 17 1 6.9250 9.7177 0.6384 18 6 7.3564 4.6746 2.8492 19 6 8.8290 4.7915 3.2475 20 6 8.2981 3.4845 2.6553 21 7 4.9388 4.3519 -0.7263 22 8 4.4712 3.2884 -1.0752 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8568 0.6439 -0.8909 29 1 3.8574 0.6436 0.8891 30 1 4.9508 5.6288 2.3311 31 1 5.3420 6.5087 0.8341 32 1 8.0919 8.2395 -1.4233 33 1 6.6214 4.6094 3.6514 34 1 9.4736 5.4046 2.6176 35 1 9.0631 4.8033 4.3120 36 1 8.1829 2.6364 3.3302 37 1 8.5931 3.2370 1.6356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351487687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:34 Heat of formation + Delta-G solvation = 79.929373 kcal Electronic energy + Delta-G solvation = -20440.463587 eV Core-core repulsion = 17223.685562 eV Total energy + Delta-G solvation = -3216.778025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.00857 -38.24613 -37.43986 -35.46382 -34.18599 -33.10580 -31.34643 -30.13648 -26.90149 -26.80025 -24.28402 -23.97417 -22.70315 -21.47215 -20.94865 -19.81695 -17.75814 -17.26346 -16.68757 -16.34734 -16.22982 -15.57946 -15.25766 -15.21265 -14.25774 -14.10947 -13.74515 -13.24312 -12.67487 -12.49039 -12.44692 -12.26003 -12.03859 -11.55919 -11.47385 -11.03539 -10.98034 -10.89428 -10.68435 -10.53725 -10.20382 -10.05658 -9.96915 -9.67999 -9.57861 -9.19773 -8.58630 -6.95037 -6.10676 -3.55117 1.63807 2.78549 2.99394 3.21850 3.38284 3.41766 3.71685 4.20220 4.40244 4.65287 4.74794 4.77296 4.83954 4.85627 5.06493 5.08504 5.12901 5.28332 5.36350 5.44254 5.57686 5.73549 5.75813 5.93663 5.96982 6.09768 6.16190 6.37689 6.40299 6.45723 6.55962 6.79467 6.86319 7.08924 7.88202 8.26936 8.79820 8.82833 9.56029 9.90696 11.03716 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.005192 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.955847 B = 5391.388833 C = 5996.792882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.017 4.017 5 C 0.146 3.854 6 N -0.468 5.468 7 C 0.168 3.832 8 C 0.218 3.782 9 N -0.556 5.556 10 C -0.279 4.279 11 H 0.083 0.917 12 C 0.048 3.952 13 N -0.885 5.885 14 Si 0.868 3.132 15 H -0.283 1.283 16 H -0.263 1.263 17 H -0.294 1.294 18 C 0.123 3.877 19 C -0.188 4.188 20 C -0.216 4.216 21 N -0.361 5.361 22 O 0.073 5.927 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 -11.568 4.080 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.056 4.056 5 C -0.075 4.075 6 N -0.203 5.203 7 C -0.108 4.108 8 C 0.089 3.911 9 N -0.273 5.273 10 C -0.407 4.407 11 H 0.100 0.900 12 C -0.155 4.155 13 N -0.524 5.524 14 Si 0.697 3.303 15 H -0.211 1.211 16 H -0.187 1.187 17 H -0.222 1.222 18 C 0.015 3.985 19 C -0.227 4.227 20 C -0.256 4.256 21 N -0.067 5.067 22 O 0.014 5.986 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.575 -10.801 3.838 17.015 hybrid contribution -0.715 0.725 0.077 1.021 sum -13.290 -10.076 3.915 17.132 Atomic orbital electron populations 1.22759 0.80468 1.02884 1.00260 1.87821 1.20114 1.27339 1.95546 1.22407 0.92137 0.85078 1.01539 1.19748 0.93114 0.85964 1.06770 1.28221 0.99148 0.98127 0.82036 1.71834 1.15905 1.03725 1.28819 1.27505 0.97390 0.97399 0.88521 1.19832 0.85424 0.90162 0.95645 1.43645 0.99738 1.62439 1.21520 1.18632 1.01843 1.01401 1.18845 0.89953 1.25375 0.97222 0.96983 0.95914 1.69854 1.44017 1.23920 1.14593 0.87057 0.80556 0.81593 0.81077 1.21063 1.18691 1.22197 1.21092 0.91061 0.96452 0.89904 1.23142 0.99218 1.00735 0.99582 1.23280 1.08929 0.92081 1.01348 1.74761 1.15644 0.99840 1.16482 1.85312 1.56709 1.20855 1.35732 0.93866 0.93875 0.89407 0.92192 0.92428 0.87597 0.86853 0.90576 0.90167 0.92370 0.88557 0.87765 0.90265 0.90526 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.91 10.70 -35.23 -0.38 -4.29 16 3 C 0.07 0.66 5.92 37.15 0.22 0.88 16 4 C -0.02 -0.19 6.21 -27.89 -0.17 -0.36 16 5 C 0.15 2.35 7.77 -13.06 -0.10 2.25 16 6 N -0.47 -8.87 11.55 -9.86 -0.11 -8.99 16 7 C 0.17 3.68 7.80 -156.36 -1.22 2.46 16 8 C 0.22 4.94 5.17 -5.19 -0.03 4.91 16 9 N -0.56 -13.40 2.44 -167.03 -0.41 -13.81 16 10 C -0.28 -7.76 8.55 -15.06 -0.13 -7.89 16 11 H 0.08 2.50 7.30 -52.49 -0.38 2.12 16 12 C 0.05 1.36 5.32 -17.43 -0.09 1.27 16 13 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 14 Si 0.87 21.67 24.96 -169.99 -4.24 17.43 16 15 H -0.28 -6.93 6.68 56.52 0.38 -6.55 16 16 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 C 0.12 2.54 6.61 -67.94 -0.45 2.09 16 19 C -0.19 -3.64 9.80 -26.73 -0.26 -3.90 16 20 C -0.22 -4.20 10.08 -26.73 -0.27 -4.46 16 21 N -0.36 -8.22 12.16 30.90 0.38 -7.85 16 22 O 0.07 1.38 11.31 18.10 0.20 1.59 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 31 H 0.08 1.96 3.10 -51.93 -0.16 1.80 16 32 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 34 H 0.10 2.27 6.93 -51.93 -0.36 1.91 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.87 8.01 -51.93 -0.42 1.46 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -32.45 315.29 -5.55 -38.00 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.12 Total: 0.71 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.39 Total: -1.41 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.63 Total: -56.77 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: -0.17 Total: -2.70 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.24 Total: 17.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.45 -5.55 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351487687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.930 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds