Wall clock time and date at job start Mon Mar 30 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33380 * 125.20446 * 2 1 4 4 C 1.38424 * 114.91979 * 179.85799 * 3 2 1 5 5 C 1.50702 * 122.54015 * 180.20000 * 4 3 2 6 6 H 1.09000 * 109.47286 * 20.27715 * 5 4 3 7 7 C 1.52998 * 109.47348 * 260.27430 * 5 4 3 8 8 N 1.46901 * 109.46955 * 140.27394 * 5 4 3 9 9 C 1.46898 * 111.00160 * 205.00308 * 8 5 4 10 10 C 1.53002 * 109.47390 * 180.02562 * 9 8 5 11 11 C 1.52998 * 109.47014 * 300.00025 * 10 9 8 12 12 C 1.53004 * 109.46968 * 60.00122 * 10 9 8 13 13 C 1.50702 * 109.47102 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00124 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99914 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99810 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00171 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47335 * 89.99621 * 17 15 13 19 19 H 1.48499 * 109.47548 * 210.00227 * 17 15 13 20 20 H 1.48509 * 109.47097 * 330.00120 * 17 15 13 21 21 C 1.33387 * 114.92317 * 0.43559 * 4 3 2 22 22 S 1.75886 * 109.59281 * 359.76596 * 21 4 3 23 23 H 1.08995 * 109.47411 * 179.71626 * 1 2 3 24 24 H 1.08998 * 109.46596 * 299.71565 * 1 2 3 25 25 H 1.09004 * 109.46950 * 59.71385 * 1 2 3 26 26 H 1.08001 * 122.54115 * 0.02562 * 3 2 1 27 27 H 1.08992 * 109.47039 * 60.00008 * 7 5 4 28 28 H 1.09002 * 109.47000 * 180.02562 * 7 5 4 29 29 H 1.09004 * 109.47273 * 299.99875 * 7 5 4 30 30 H 1.00901 * 111.00171 * 328.95342 * 8 5 4 31 31 H 1.09008 * 109.47137 * 300.00130 * 9 8 5 32 32 H 1.09002 * 109.47538 * 59.99844 * 9 8 5 33 33 H 1.08999 * 109.47104 * 60.00042 * 11 10 9 34 34 H 1.09001 * 109.47131 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.46744 * 299.99534 * 11 10 9 36 36 H 1.08991 * 109.47229 * 59.99870 * 12 10 9 37 37 H 1.09004 * 109.46929 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.46492 * 299.99631 * 12 10 9 39 39 H 0.97003 * 119.99838 * 179.97438 * 16 15 13 40 40 H 1.07997 * 125.20749 * 179.75076 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0031 5 6 4.6624 1.9480 0.0080 6 1 4.2014 2.8691 0.3648 7 6 5.1916 2.1593 -1.4119 8 7 5.7741 1.5813 0.8954 9 6 6.4633 2.7773 1.3980 10 6 7.6125 2.3559 2.3159 11 6 7.0562 1.5548 3.4947 12 6 8.6004 1.4899 1.5316 13 6 8.3190 3.5830 2.8319 14 1 7.9823 4.5652 2.5345 15 6 9.3960 3.4518 3.6828 16 7 9.8063 2.2558 4.0445 17 14 10.2722 4.9727 4.3218 18 1 9.6394 5.4118 5.5914 19 1 11.7021 4.6546 4.5656 20 1 10.1717 6.0610 3.3164 21 6 3.9751 -0.4478 -0.0036 22 16 2.5209 -1.4373 -0.0077 23 1 -0.3634 -1.0276 -0.0051 24 1 -0.3632 0.5094 0.8925 25 1 -0.3633 0.5183 -0.8874 26 1 1.8670 2.0894 0.0004 27 1 4.3667 2.4314 -2.0703 28 1 5.9329 2.9585 -1.4082 29 1 5.6526 1.2383 -1.7686 30 1 5.4532 1.0022 1.6569 31 1 6.8600 3.3479 0.5581 32 1 5.7594 3.3946 1.9563 33 1 6.5449 0.6673 3.1218 34 1 7.8749 1.2550 4.1489 35 1 6.3525 2.1719 4.0534 36 1 8.9967 2.0606 0.6918 37 1 9.4190 1.1894 2.1856 38 1 8.0890 0.6025 1.1588 39 1 10.5642 2.1634 4.6428 40 1 4.9862 -0.8272 -0.0063 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414171826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:46 Heat of formation + Delta-G solvation = 17.937445 kcal Electronic energy + Delta-G solvation = -18397.777889 eV Core-core repulsion = 15724.604907 eV Total energy + Delta-G solvation = -2673.172983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.88594 -36.66222 -34.41143 -31.99146 -30.81311 -28.72913 -26.69527 -25.54629 -25.20825 -24.58368 -23.09490 -20.35688 -18.66715 -18.44743 -16.97597 -16.09798 -15.50890 -14.59491 -14.46785 -14.17015 -13.87588 -13.57735 -13.16740 -12.87094 -12.63978 -12.45317 -12.26360 -11.96683 -11.88800 -11.63832 -11.38143 -11.16099 -11.04504 -10.91542 -10.67128 -10.59984 -10.34535 -10.11994 -10.03175 -9.35480 -9.05619 -8.60018 -8.53573 -8.28059 -8.26881 -7.69225 -5.89098 -3.99336 1.06619 1.67819 2.03996 2.76486 3.32458 3.39520 3.42554 4.44773 4.63251 4.93654 5.06296 5.18959 5.34287 5.36372 5.42865 5.52964 5.63505 5.72298 5.82121 6.03424 6.08857 6.23312 6.36250 6.40443 6.48684 6.51461 6.65765 6.76063 6.93103 7.11149 7.20427 7.40737 7.50659 7.77389 7.78552 7.86152 8.01808 8.24155 8.37264 8.58462 9.02119 9.65520 11.11374 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036088 B = 0.003978 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.691169 B = 7037.206579 C = 7161.037760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.186 4.186 3 C -0.132 4.132 4 C -0.100 4.100 5 C 0.140 3.860 6 H 0.045 0.955 7 C -0.130 4.130 8 N -0.679 5.679 9 C 0.075 3.925 10 C 0.069 3.931 11 C -0.132 4.132 12 C -0.118 4.118 13 C -0.506 4.506 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.888 3.112 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.187 4.187 22 S 0.075 5.925 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.339 0.661 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.010 0.990 34 H 0.083 0.917 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.019 0.981 39 H 0.257 0.743 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 -5.236 -8.441 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.303 4.303 3 C -0.163 4.163 4 C -0.112 4.112 5 C 0.028 3.972 6 H 0.062 0.938 7 C -0.188 4.188 8 N -0.312 5.312 9 C -0.053 4.053 10 C 0.068 3.932 11 C -0.189 4.189 12 C -0.175 4.175 13 C -0.545 4.545 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.322 4.322 22 S 0.339 5.661 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.153 0.847 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.143 -6.994 -8.849 18.882 hybrid contribution 0.203 2.725 1.080 2.938 sum -14.939 -4.269 -7.769 17.371 Atomic orbital electron populations 1.20285 0.88117 1.02584 1.02749 1.24366 0.99663 0.95744 1.10491 1.19959 0.92531 0.99215 1.04557 1.19055 0.94096 0.94820 1.03250 1.20167 0.88812 0.92960 0.95303 0.93757 1.21734 1.00175 1.02314 0.94589 1.60750 1.26197 1.20896 1.23375 1.22202 0.96036 0.89564 0.97494 1.18090 0.90262 0.94302 0.90514 1.21828 1.00121 0.96531 1.00456 1.21623 1.00542 0.97067 0.98299 1.21114 1.13633 0.92130 1.27597 0.93041 1.24883 0.96887 0.95586 0.96217 1.69837 1.26413 1.21125 1.34974 0.86667 0.78923 0.83620 0.79167 1.20898 1.21317 1.20071 1.25471 1.01629 0.95765 1.09364 1.84153 0.97691 1.10142 1.74115 0.91672 0.90770 0.90822 0.84677 0.93362 0.92256 0.92139 0.84086 0.92469 0.96922 0.97102 0.89867 0.96292 0.96339 0.90815 0.96170 0.93229 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.38 36.01 0.37 -0.27 16 2 C -0.19 -2.10 6.51 -36.00 -0.23 -2.34 16 3 C -0.13 -1.64 9.82 -41.21 -0.40 -2.05 16 4 C -0.10 -1.39 4.61 -106.25 -0.49 -1.88 16 5 C 0.14 2.13 2.91 -68.86 -0.20 1.93 16 6 H 0.04 0.69 7.74 -51.93 -0.40 0.29 16 7 C -0.13 -1.84 9.40 37.16 0.35 -1.49 16 8 N -0.68 -12.14 5.17 -107.95 -0.56 -12.70 16 9 C 0.08 1.58 4.38 -3.82 -0.02 1.56 16 10 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 11 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 12 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 13 C -0.51 -13.69 8.01 -34.44 -0.28 -13.96 16 14 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 15 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 16 N -0.88 -24.61 9.35 55.43 0.52 -24.09 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.19 -2.52 10.23 29.04 0.30 -2.23 16 22 S 0.08 0.87 23.33 -107.50 -2.51 -1.63 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.34 6.19 6.08 -39.29 -0.24 5.95 16 31 H 0.06 1.22 7.44 -51.92 -0.39 0.83 16 32 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 33 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 38 H 0.02 0.44 7.60 -51.93 -0.39 0.05 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.17 2.34 8.03 -52.49 -0.42 1.92 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -27.36 328.91 -9.34 -36.70 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.54 Total: 3.45 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -0.19 Total: -22.88 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.04 Total: -36.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.36 -9.34 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414171826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.640 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds