Wall clock time and date at job start Mon Mar 30 2020 00:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.50699 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.31756 * 119.04993 * 270.01736 * 4 3 2 6 6 C 1.33127 * 120.82910 * 180.02562 * 5 4 3 7 7 N 1.38601 * 120.49691 * 180.02562 * 6 5 4 8 8 C 1.46496 * 120.00091 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47293 * 324.99342 * 8 7 6 10 10 C 1.52997 * 109.47231 * 84.99665 * 8 7 6 11 11 C 1.50702 * 109.47037 * 204.99665 * 8 7 6 12 12 H 1.07992 * 120.00226 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99594 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00422 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99598 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47316 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47444 * 120.00086 * 15 13 11 18 18 H 1.48507 * 109.46951 * 239.99526 * 15 13 11 19 19 C 1.39284 * 119.00416 * 359.97438 * 6 5 4 20 20 C 1.38880 * 118.28690 * 359.97438 * 19 6 5 21 21 O 1.35545 * 120.46065 * 180.28877 * 20 19 6 22 22 C 1.42905 * 116.99668 * 179.72059 * 21 20 19 23 23 N 1.31740 * 119.05430 * 89.99641 * 4 3 2 24 24 H 1.08997 * 109.47222 * 300.00152 * 1 2 3 25 25 H 1.09001 * 109.46718 * 60.00524 * 1 2 3 26 26 H 1.09005 * 109.46718 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47173 * 59.99472 * 3 2 1 28 28 H 1.08998 * 109.46978 * 299.99806 * 3 2 1 29 29 H 0.97002 * 119.99796 * 359.97438 * 7 6 5 30 30 H 1.09007 * 109.46867 * 299.99699 * 10 8 7 31 31 H 1.08998 * 109.47498 * 60.00091 * 10 8 7 32 32 H 1.09004 * 109.47082 * 180.02562 * 10 8 7 33 33 H 0.97005 * 120.00508 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.85496 * 180.02562 * 19 6 5 35 35 H 1.08992 * 109.47075 * 60.00517 * 22 21 20 36 36 H 1.09003 * 109.46565 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.46914 * 300.00327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1498 1.1359 1.1527 6 6 5.4763 1.0313 1.1946 7 7 6.1396 0.9780 2.4104 8 6 7.5997 0.8635 2.4438 9 1 7.9350 0.2468 1.6100 10 6 8.2232 2.2561 2.3312 11 6 8.0240 0.2267 3.7421 12 1 7.2806 -0.0633 4.4697 13 6 9.3616 0.0153 4.0014 14 7 10.2671 0.3689 3.1156 15 14 9.8876 -0.7748 5.6103 16 1 8.6862 -1.0776 6.4291 17 1 10.6238 -2.0329 5.3267 18 1 10.7710 0.1585 6.3545 19 6 6.1874 0.9752 -0.0017 20 6 5.4763 1.0306 -1.1933 21 8 6.1233 0.9735 -2.3830 22 6 5.3186 1.0305 -3.5625 23 7 4.1508 1.1357 -1.1507 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 5.6371 1.0173 3.2392 30 1 7.9163 2.7167 1.3921 31 1 7.8880 2.8729 3.1650 32 1 9.3097 2.1709 2.3556 33 1 11.2082 0.2198 3.2978 34 1 7.2640 0.8899 -0.0026 35 1 4.7610 1.9669 -3.5770 36 1 5.9594 0.9751 -4.4425 37 1 4.6216 0.1925 -3.5676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443441435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:32 Heat of formation + Delta-G solvation = -30.320784 kcal Electronic energy + Delta-G solvation = -20177.945113 eV Core-core repulsion = 16956.386282 eV Total energy + Delta-G solvation = -3221.558831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68865 -38.33702 -37.71244 -36.17857 -33.27963 -31.96461 -31.04971 -28.55186 -28.18875 -26.87542 -25.79620 -25.32726 -22.69204 -22.41173 -20.27375 -18.24261 -18.01580 -16.57908 -16.33013 -15.72859 -15.58804 -15.43373 -15.11150 -14.87502 -14.76892 -13.96187 -13.80600 -13.43873 -12.80995 -12.43414 -12.39955 -12.22284 -11.83170 -11.56058 -11.48724 -11.15692 -11.10102 -10.88474 -10.50484 -10.31048 -10.16738 -9.98993 -9.75837 -9.16899 -8.92278 -8.77672 -8.58227 -7.31078 -6.23761 -4.32381 1.46543 1.96423 3.19528 3.20419 3.28280 3.31938 3.59694 3.91406 4.28908 4.32363 4.62437 4.94488 5.09950 5.16378 5.24886 5.33387 5.36095 5.42170 5.48750 5.56095 5.58922 5.69342 5.93713 6.09412 6.42397 6.62221 6.81437 6.91130 7.05084 7.15920 7.30903 7.56570 7.57912 7.71474 7.94494 8.10928 8.46771 8.65585 8.85270 9.35228 10.82571 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.004759 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.127994 B = 5881.861026 C = 6871.024786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.140 3.860 4 C 0.386 3.614 5 N -0.589 5.589 6 C 0.464 3.536 7 N -0.676 5.676 8 C 0.265 3.735 9 H 0.047 0.953 10 C -0.153 4.153 11 C -0.533 4.533 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.308 4.308 20 C 0.377 3.623 21 O -0.303 6.303 22 C 0.042 3.958 23 N -0.613 5.613 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.401 0.599 30 H 0.015 0.985 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.266 0.734 34 H 0.152 0.848 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 2.582 -8.516 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.061 3.939 4 C 0.114 3.886 5 N -0.320 5.320 6 C 0.220 3.780 7 N -0.301 5.301 8 C 0.163 3.837 9 H 0.065 0.935 10 C -0.212 4.212 11 C -0.571 4.571 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.338 4.338 20 C 0.196 3.804 21 O -0.208 6.208 22 C -0.054 4.054 23 N -0.351 5.351 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.236 0.764 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.169 0.831 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.126 2.428 -8.604 15.881 hybrid contribution 0.744 -0.222 0.968 1.241 sum -12.382 2.207 -7.636 14.713 Atomic orbital electron populations 1.22746 0.80653 1.02844 1.00005 1.87957 1.19738 1.26697 1.95453 1.20885 0.85673 0.85591 1.01736 1.21674 0.95187 0.89373 0.82372 1.67735 1.08298 1.25902 1.30077 1.18354 0.86921 0.85290 0.87479 1.45528 1.09122 1.72344 1.03132 1.18984 0.71984 0.94056 0.98688 0.93518 1.22196 1.04732 0.97138 0.97135 1.21182 0.92581 1.41078 1.02291 0.91703 1.24864 0.96193 0.95153 0.97341 1.69875 1.01369 1.46397 1.34543 0.86334 0.78700 0.78976 0.82794 1.19631 1.20772 1.20785 1.21113 1.03000 1.20331 0.89315 1.19529 0.87232 0.87903 0.85775 1.86238 1.35114 1.87165 1.12317 1.22817 0.95823 1.02332 0.84384 1.67683 1.08318 1.27760 1.31302 0.93846 0.93992 0.89558 0.90675 0.90941 0.76391 0.96620 0.94866 0.88683 0.92447 0.83051 0.92458 0.88923 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.53 10.69 -35.23 -0.38 -5.91 16 3 C 0.14 1.94 6.37 36.01 0.23 2.17 16 4 C 0.39 6.97 7.27 -157.28 -1.14 5.83 16 5 N -0.59 -11.70 10.36 -10.02 -0.10 -11.80 16 6 C 0.46 9.75 7.68 -154.73 -1.19 8.56 16 7 N -0.68 -14.55 5.22 -54.95 -0.29 -14.83 16 8 C 0.26 6.36 2.26 -69.08 -0.16 6.20 16 9 H 0.05 1.22 6.51 -51.93 -0.34 0.88 16 10 C -0.15 -3.56 9.23 37.16 0.34 -3.21 16 11 C -0.53 -13.78 8.73 -34.44 -0.30 -14.08 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 13 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.88 -23.77 11.32 55.43 0.63 -23.14 16 15 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.31 -6.35 8.88 -38.95 -0.35 -6.70 16 20 C 0.38 7.19 7.52 -16.79 -0.13 7.06 16 21 O -0.30 -5.16 10.49 -18.33 -0.19 -5.35 16 22 C 0.04 0.52 10.41 101.05 1.05 1.57 16 23 N -0.61 -11.18 9.27 -10.87 -0.10 -11.28 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.40 8.21 8.66 -40.82 -0.35 7.86 16 30 H 0.01 0.33 7.77 -51.93 -0.40 -0.08 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.15 3.22 6.30 -52.49 -0.33 2.89 16 35 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -29.17 317.46 -6.37 -35.54 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.08 Total: 6.20 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -0.62 Total: 10.50 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.14 Total: -61.06 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.57 Total: -11.26 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.17 -6.37 -35.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443441435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.224 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds