Wall clock time and date at job start Mon Mar 30 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 116.99973 * 2 1 4 4 C 1.38713 * 120.04439 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.91932 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.99593 * 179.97438 * 5 4 3 7 7 C 1.38512 * 120.00832 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08309 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.96160 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.47017 * 89.99785 * 9 8 7 11 11 C 1.46900 * 111.00135 * 66.05082 * 10 9 8 12 12 C 1.46905 * 110.99882 * 190.00069 * 10 9 8 13 13 H 1.08996 * 109.47093 * 55.00472 * 12 10 9 14 14 C 1.52995 * 109.47355 * 295.00192 * 12 10 9 15 15 C 1.50698 * 109.46934 * 174.99996 * 12 10 9 16 16 H 1.07996 * 120.00494 * 0.02562 * 15 12 10 17 17 C 1.37882 * 120.00061 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99777 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00193 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47268 * 59.99843 * 19 17 15 21 21 H 1.48499 * 109.46854 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.46724 * 299.99733 * 19 17 15 23 23 C 1.38180 * 120.08200 * 359.97438 * 8 7 5 24 24 H 1.08999 * 109.47051 * 60.00416 * 1 2 3 25 25 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47485 * 300.00226 * 1 2 3 27 27 H 1.08003 * 120.03903 * 0.27493 * 4 3 2 28 28 H 1.08000 * 119.96166 * 179.97438 * 7 5 4 29 29 H 1.08996 * 109.47334 * 210.00041 * 9 8 7 30 30 H 1.09007 * 109.47269 * 329.99906 * 9 8 7 31 31 H 1.09006 * 109.47019 * 59.99372 * 11 10 9 32 32 H 1.08998 * 109.47444 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46580 * 300.00048 * 11 10 9 34 34 H 1.08996 * 109.47249 * 300.00185 * 14 12 10 35 35 H 1.09004 * 109.47372 * 59.99819 * 14 12 10 36 36 H 1.09003 * 109.47251 * 179.97438 * 14 12 10 37 37 H 0.97001 * 119.99953 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.00105 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3747 -0.0005 5 6 1.9221 3.6060 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5161 -0.0011 9 6 5.5624 2.5951 -0.0022 10 7 6.0524 2.6222 1.3824 11 6 5.7697 1.3529 2.0657 12 6 7.4868 2.9360 1.4272 13 1 7.6709 3.8711 0.8982 14 6 8.2767 1.8085 0.7597 15 6 7.9258 3.0758 2.8620 16 1 7.2110 2.9443 3.6607 17 6 9.2402 3.3717 3.1551 18 7 10.1107 3.5324 2.1824 19 14 9.7846 3.5444 4.9337 20 1 9.5346 2.2700 5.6538 21 1 11.2343 3.8630 4.9788 22 1 9.0174 4.6382 5.5821 23 6 3.4312 1.2844 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2127 2.3198 0.0035 28 1 3.7971 4.6373 -0.0024 29 1 5.9716 1.7250 -0.5155 30 1 5.8783 3.5025 -0.5172 31 1 6.2627 0.5375 1.5363 32 1 6.1432 1.3998 3.0886 33 1 4.6937 1.1793 2.0790 34 1 8.0927 0.8734 1.2887 35 1 7.9592 1.7073 -0.2781 36 1 9.3410 2.0416 0.7926 37 1 11.0354 3.7410 2.3885 38 1 4.0202 0.3792 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449023606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:59 Heat of formation + Delta-G solvation = -50.247867 kcal Electronic energy + Delta-G solvation = -20290.496743 eV Core-core repulsion = 17048.153847 eV Total energy + Delta-G solvation = -3242.342896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.84734 -40.16103 -38.10558 -36.47871 -32.93558 -31.13032 -30.30503 -28.49082 -27.43342 -26.66777 -25.16501 -23.69472 -22.52112 -21.16638 -19.30055 -17.92969 -16.95356 -16.23945 -16.04031 -16.01945 -15.80382 -15.37044 -15.17835 -14.55856 -14.29995 -13.83068 -13.60334 -12.99549 -12.82507 -12.42801 -12.33795 -12.11224 -11.58975 -11.44416 -11.27196 -11.14498 -11.04161 -10.84427 -10.69435 -10.64306 -10.47139 -10.01544 -9.83641 -8.92856 -8.69117 -8.38521 -8.20963 -7.18379 -6.01056 -4.04730 1.19744 1.36988 3.09950 3.33448 3.37611 3.40759 3.63402 4.25337 4.42515 4.70020 4.85412 4.94312 5.03307 5.08834 5.16672 5.26362 5.31178 5.39879 5.56434 5.78712 6.03948 6.07726 6.17866 6.23976 6.27649 6.39836 6.65094 6.69867 6.74843 6.83849 6.90710 7.10289 7.27575 7.46093 7.70692 7.81965 8.09407 8.36230 8.56983 9.00661 9.60197 11.06048 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.004317 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.550513 B = 6484.187488 C = 6770.906007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.151 3.849 4 C -0.255 4.255 5 C 0.133 3.867 6 F -0.141 7.141 7 C -0.168 4.168 8 C 0.007 3.993 9 C 0.086 3.914 10 N -0.528 5.528 11 C 0.030 3.970 12 C 0.211 3.789 13 H 0.041 0.959 14 C -0.173 4.173 15 C -0.500 4.500 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.155 4.155 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.017 0.983 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.031 0.969 35 H 0.008 0.992 36 H 0.088 0.912 37 H 0.261 0.739 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.387 -4.898 -6.048 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.105 3.895 4 C -0.275 4.275 5 C 0.114 3.886 6 F -0.119 7.119 7 C -0.188 4.188 8 C 0.007 3.993 9 C -0.042 4.042 10 N -0.251 5.251 11 C -0.119 4.119 12 C 0.105 3.895 13 H 0.058 0.942 14 C -0.232 4.232 15 C -0.539 4.539 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.174 4.174 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.370 -4.621 -5.818 17.977 hybrid contribution 0.352 -0.213 0.539 0.678 sum -16.018 -4.834 -5.279 17.544 Atomic orbital electron populations 1.23064 0.78479 1.03902 1.01432 1.86100 1.21330 1.26542 1.88643 1.18621 0.91911 0.83508 0.95420 1.20997 1.00622 0.91322 1.14530 1.17338 0.89208 0.81285 1.00767 1.91483 1.77373 1.49256 1.93801 1.20978 0.91156 1.00373 1.06260 1.19644 0.96561 0.90882 0.92263 1.21091 0.88201 1.01681 0.93246 1.62407 1.20428 1.31487 1.10799 1.22327 0.98754 0.90282 1.00490 1.19346 0.79457 0.93869 0.96852 0.94152 1.22415 1.05649 0.99608 0.95563 1.21069 0.93953 1.47367 0.91493 0.91942 1.24917 0.96618 0.95393 0.97282 1.69873 1.03520 1.48836 1.31174 0.86581 0.77342 0.78592 0.85006 1.20369 1.21405 1.20227 1.20418 0.90950 0.98746 1.07314 0.92648 0.88211 0.92567 0.84733 0.84309 0.93931 0.90046 0.96427 0.90644 0.93549 0.95024 0.97321 0.89299 0.92944 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.81 10.50 -19.40 -0.20 -4.02 16 3 C 0.15 2.04 6.69 -39.22 -0.26 1.78 16 4 C -0.25 -3.28 9.02 -39.37 -0.35 -3.63 16 5 C 0.13 1.90 7.30 -39.44 -0.29 1.62 16 6 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 7 C -0.17 -2.55 9.68 -39.49 -0.38 -2.93 16 8 C 0.01 0.12 4.88 -104.65 -0.51 -0.39 16 9 C 0.09 1.51 4.56 -4.98 -0.02 1.49 16 10 N -0.53 -11.09 4.73 -237.73 -1.13 -12.21 16 11 C 0.03 0.59 8.37 60.06 0.50 1.09 16 12 C 0.21 5.17 2.34 -68.87 -0.16 5.01 16 13 H 0.04 1.08 8.03 -51.93 -0.42 0.67 16 14 C -0.17 -4.08 8.27 37.16 0.31 -3.77 16 15 C -0.50 -13.49 7.88 -34.44 -0.27 -13.76 16 16 H 0.06 1.69 6.77 -52.49 -0.36 1.34 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.15 -2.27 7.90 -39.42 -0.31 -2.58 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 28 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.04 0.73 6.88 -51.93 -0.36 0.38 16 30 H 0.08 1.41 7.94 -51.93 -0.41 0.99 16 31 H 0.02 0.33 6.51 -51.93 -0.34 0.00 16 32 H 0.07 1.60 6.41 -51.93 -0.33 1.26 16 33 H 0.05 0.82 6.16 -51.93 -0.32 0.50 16 34 H 0.03 0.72 6.47 -51.93 -0.34 0.39 16 35 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.13 1.89 8.03 -52.49 -0.42 1.47 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -28.59 308.84 -6.95 -35.54 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.06 Total: -0.29 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.86 Total: -13.38 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.50 Total: -36.74 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.59 -6.95 -35.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449023606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.705 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds