Wall clock time and date at job start Mon Mar 30 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47099 * 125.55643 * 2 1 4 4 C 1.54092 * 103.77620 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.63709 * 241.31318 * 4 3 2 6 6 C 1.52993 * 110.52435 * 118.63206 * 4 3 2 7 7 N 1.46904 * 109.47141 * 183.95678 * 6 4 3 8 8 C 1.46896 * 110.99973 * 169.99595 * 7 6 4 9 9 C 1.50701 * 109.47346 * 291.25362 * 8 7 6 10 10 H 1.08001 * 120.00215 * 357.10202 * 9 8 7 11 11 C 1.37882 * 119.99983 * 177.09739 * 9 8 7 12 12 N 1.31516 * 119.99669 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00129 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47460 * 89.99493 * 13 11 9 15 15 H 1.48498 * 109.46913 * 209.99765 * 13 11 9 16 16 H 1.48500 * 109.46691 * 329.99551 * 13 11 9 17 17 C 1.46892 * 111.00063 * 293.95086 * 7 6 4 18 18 C 1.52999 * 109.47171 * 163.08314 * 17 7 6 19 19 C 1.47201 * 109.46990 * 181.23048 * 18 17 7 20 20 N 8.14003 * 164.51053 * 67.77030 * 2 1 3 21 21 O 1.45698 * 104.00731 * 359.97438 * 4 3 2 22 22 C 1.33773 * 109.47975 * 0.02562 * 21 4 3 23 23 O 1.21510 * 123.07446 * 180.02562 * 22 21 4 24 24 H 1.09007 * 109.46694 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47340 * 299.99986 * 1 2 3 26 26 H 1.08997 * 109.47248 * 60.00634 * 1 2 3 27 27 H 1.08998 * 110.56656 * 61.44424 * 3 2 1 28 28 H 1.08997 * 110.56229 * 298.59005 * 3 2 1 29 29 H 1.09000 * 109.47516 * 63.95646 * 6 4 3 30 30 H 1.09009 * 109.46792 * 303.95610 * 6 4 3 31 31 H 1.09004 * 109.47327 * 51.25336 * 8 7 6 32 32 H 1.08995 * 109.47406 * 171.25077 * 8 7 6 33 33 H 0.96998 * 119.99981 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46934 * 43.08294 * 17 7 6 35 35 H 1.09001 * 109.47304 * 283.08627 * 17 7 6 36 36 H 1.08996 * 109.47316 * 61.23287 * 18 17 7 37 37 H 1.08993 * 109.46991 * 301.22630 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3204 1.1967 0.0000 4 6 3.7513 0.6250 -0.0007 5 1 4.2900 0.9369 0.8941 6 6 4.5037 1.0638 -1.2584 7 7 5.8290 0.4306 -1.2822 8 6 6.4869 0.6350 -2.5796 9 6 5.7596 -0.1497 -3.6409 10 1 4.9238 -0.7779 -3.3704 11 6 6.1611 -0.0655 -4.9573 12 7 5.5266 -0.7507 -5.8833 13 14 7.6071 1.0206 -5.4251 14 1 8.8630 0.2317 -5.3516 15 1 7.4197 1.5252 -6.8091 16 1 7.6880 2.1685 -4.4864 17 6 6.6684 0.9248 -0.1827 18 6 7.8481 -0.0268 0.0258 19 6 8.6729 0.4525 1.1469 20 7 9.3094 0.8224 2.0123 21 8 3.5542 -0.8186 -0.0003 22 6 2.2443 -1.0901 -0.0002 23 8 1.8016 -2.2216 0.0006 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 2.1462 1.7919 0.8964 28 1 2.1457 1.7921 -0.8961 29 1 4.6190 2.1477 -1.2533 30 1 3.9410 0.7624 -2.1421 31 1 6.4675 1.6948 -2.8339 32 1 7.5207 0.2946 -2.5204 33 1 5.8093 -0.6918 -6.8093 34 1 6.0767 0.9758 0.7314 35 1 7.0423 1.9185 -0.4293 36 1 8.4520 -0.0610 -0.8809 37 1 7.4739 -1.0254 0.2511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497209746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:07 Heat of formation + Delta-G solvation = -27.075540 kcal Electronic energy + Delta-G solvation = -20527.072084 eV Core-core repulsion = 17305.653977 eV Total energy + Delta-G solvation = -3221.418107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37061 -37.97959 -36.86961 -36.10809 -35.31614 -32.70908 -31.81493 -30.39913 -28.20749 -26.93720 -25.01562 -23.34187 -22.15958 -21.07664 -19.94025 -17.63779 -17.29473 -16.93619 -16.78337 -16.35430 -15.37275 -14.96318 -14.62593 -14.40004 -14.29260 -14.04741 -13.69576 -13.50603 -13.07413 -12.88637 -12.54650 -12.48293 -12.43204 -12.26774 -12.14468 -11.64005 -11.57112 -11.13712 -10.97689 -10.65834 -10.55486 -10.38304 -10.09470 -9.93618 -9.38038 -8.91693 -8.64218 -7.65447 -6.11361 -4.10504 2.60412 2.82387 2.88892 2.98119 3.21846 3.28432 3.30967 3.61197 3.93925 4.19069 4.33978 4.55724 4.66723 4.88953 5.05301 5.12896 5.17397 5.21412 5.27945 5.32988 5.42388 5.56587 5.61707 5.77981 5.86201 5.95800 6.09883 6.24865 6.43067 6.63900 6.73920 7.42128 7.56252 7.59602 7.67747 7.79208 8.23831 8.54260 9.00237 9.48648 11.01467 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.007036 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.913147 B = 3978.381923 C = 5710.777722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.639 5.639 3 C 0.072 3.928 4 C 0.072 3.928 5 H 0.109 0.891 6 C 0.056 3.944 7 N -0.517 5.517 8 C 0.159 3.841 9 C -0.513 4.513 10 H 0.083 0.917 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.871 3.129 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.268 1.268 17 C 0.054 3.946 18 C -0.028 4.028 19 C 0.219 3.781 20 N -0.457 5.457 21 O -0.294 6.294 22 C 0.641 3.359 23 O -0.530 6.530 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.105 0.895 31 H -0.006 1.006 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.113 0.887 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 7.820 11.192 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.389 5.389 3 C -0.052 4.052 4 C 0.015 3.985 5 H 0.127 0.873 6 C -0.073 4.073 7 N -0.241 5.241 8 C 0.033 3.967 9 C -0.552 4.552 10 H 0.101 0.899 11 C -0.131 4.131 12 N -0.534 5.534 13 Si 0.698 3.302 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.076 4.076 18 C -0.069 4.069 19 C -0.099 4.099 20 N -0.134 5.134 21 O -0.203 6.203 22 C 0.396 3.604 23 O -0.415 6.415 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.011 0.989 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.284 7.069 12.334 15.166 hybrid contribution 0.625 1.464 -0.944 1.851 sum -4.659 8.533 11.390 14.975 Atomic orbital electron populations 1.21433 0.75457 1.04155 1.01481 1.47914 1.07288 1.06052 1.77622 1.22817 0.89061 0.89153 1.04182 1.24037 0.95196 0.77571 1.01651 0.87339 1.22363 0.91839 0.96173 0.96915 1.61810 1.01311 1.56864 1.04082 1.20305 0.95193 0.95299 0.85877 1.21006 1.17125 1.27136 0.89891 0.89865 1.24903 0.96374 0.95400 0.96465 1.69895 1.40797 1.41344 1.01360 0.86946 0.83681 0.81486 0.78106 1.20038 1.21235 1.19240 1.22009 0.93872 0.95404 0.96331 1.19363 0.94327 1.01532 0.91628 1.29434 0.93457 0.92860 0.94152 1.81184 1.10659 1.09728 1.11868 1.87476 1.21825 1.24981 1.86020 1.18664 0.80618 0.85307 0.75824 1.91004 1.73991 1.20775 1.55736 0.89454 0.92040 0.91711 0.89389 0.88769 0.93165 0.87651 0.98850 0.95116 0.92574 0.91029 0.94506 0.86888 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.06 11.23 59.85 0.67 1.73 16 2 N -0.64 -7.99 3.36 -186.76 -0.63 -8.62 16 3 C 0.07 0.68 7.34 -3.14 -0.02 0.66 16 4 C 0.07 0.87 3.71 -26.16 -0.10 0.78 16 5 H 0.11 1.03 6.39 -51.93 -0.33 0.70 16 6 C 0.06 0.81 4.38 -3.83 -0.02 0.79 16 7 N -0.52 -8.68 4.35 -236.08 -1.03 -9.71 16 8 C 0.16 3.26 3.64 -4.98 -0.02 3.24 16 9 C -0.51 -13.29 8.90 -34.44 -0.31 -13.59 16 10 H 0.08 2.44 7.72 -52.49 -0.41 2.03 16 11 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 12 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 13 Si 0.87 19.88 27.53 -169.99 -4.68 15.20 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -5.75 6.46 56.52 0.37 -5.39 16 17 C 0.05 0.69 4.80 -3.83 -0.02 0.67 16 18 C -0.03 -0.34 5.76 -29.52 -0.17 -0.51 16 19 C 0.22 2.88 15.43 -20.75 -0.32 2.56 16 20 N -0.46 -7.07 18.54 42.16 0.78 -6.29 16 21 O -0.29 -5.01 10.72 -37.84 -0.41 -5.42 16 22 C 0.64 11.06 8.85 53.71 0.48 11.53 16 23 O -0.53 -11.08 17.31 -19.12 -0.33 -11.42 16 24 H 0.09 0.91 7.53 -51.93 -0.39 0.52 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.79 7.73 -51.93 -0.40 0.39 16 29 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.11 1.89 6.91 -51.92 -0.36 1.53 16 31 H -0.01 -0.13 6.95 -51.93 -0.36 -0.49 16 32 H 0.03 0.62 6.00 -51.93 -0.31 0.30 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.07 0.77 5.97 -51.93 -0.31 0.46 16 35 H 0.04 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.11 1.38 6.66 -51.93 -0.35 1.04 16 37 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -34.28 314.84 -5.61 -39.89 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.92 Total: -2.56 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 0.08 Total: 9.68 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.10 Total: -50.12 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.74 Total: -16.83 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.68 Total: 15.20 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.28 -5.61 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497209746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.813 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds