Wall clock time and date at job start Mon Mar 30 2020 01:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 116.99752 * 2 1 4 4 C 1.38773 * 120.04607 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.99517 * 179.69812 * 4 3 2 6 6 C 1.38255 * 120.07924 * 0.53577 * 5 4 3 7 7 C 1.50703 * 119.95539 * 179.76449 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72195 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47153 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99780 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00101 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00154 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47418 * 89.99759 * 16 14 12 18 18 H 1.48508 * 109.47382 * 210.00052 * 16 14 12 19 19 H 1.48500 * 109.47516 * 329.99993 * 16 14 12 20 20 C 1.38473 * 120.08680 * 359.49035 * 6 5 4 21 21 F 1.35097 * 119.99985 * 180.25832 * 20 6 5 22 22 C 1.38385 * 120.00146 * 0.22694 * 20 6 5 23 23 H 1.09004 * 109.47277 * 60.00315 * 1 2 3 24 24 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47392 * 299.99519 * 1 2 3 26 26 H 1.07998 * 119.99426 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.96085 * 180.29529 * 5 4 3 28 28 H 1.09002 * 109.47152 * 139.72283 * 7 6 5 29 29 H 1.09001 * 109.46980 * 19.72383 * 7 6 5 30 30 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 31 31 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 32 32 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 33 33 H 1.09005 * 109.47424 * 300.00229 * 10 9 8 34 34 H 1.09004 * 109.47266 * 59.99979 * 10 9 8 35 35 H 1.08995 * 109.47051 * 300.00167 * 11 10 9 36 36 H 1.09003 * 109.46901 * 60.00330 * 11 10 9 37 37 H 0.97005 * 120.00536 * 179.97438 * 15 14 12 38 38 H 1.08005 * 120.03880 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2909 2.3753 0.0005 5 6 1.9191 3.6055 0.0068 6 6 3.2997 3.6786 0.0014 7 6 3.9820 5.0223 0.0030 8 7 4.4185 5.3514 -1.3605 9 6 5.0890 6.6580 -1.3978 10 6 5.5275 6.9655 -2.8309 11 6 6.2264 8.3260 -2.8696 12 6 6.6589 8.6286 -4.2812 13 1 6.4561 7.9211 -5.0715 14 6 7.3146 9.8082 -4.5633 15 7 7.6916 10.0725 -5.7952 16 14 7.6674 11.0309 -3.1959 17 1 8.9900 10.7296 -2.5914 18 1 7.6799 12.4073 -3.7535 19 1 6.6128 10.9280 -2.1555 20 6 4.0563 2.5189 0.0003 21 9 5.4052 2.5924 0.0003 22 6 3.4306 1.2845 -0.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.2124 2.3195 0.0005 27 1 1.3310 4.5113 0.0121 28 1 4.8483 4.9891 0.6637 29 1 3.2854 5.7831 0.3551 30 1 5.0146 4.6280 -1.7340 31 1 4.3998 7.4299 -1.0555 32 1 5.9629 6.6365 -0.7466 33 1 6.2166 6.1935 -3.1736 34 1 4.6534 6.9870 -3.4817 35 1 5.5377 9.0981 -2.5268 36 1 7.1007 8.3040 -2.2189 37 1 8.1526 10.9026 -5.9938 38 1 4.0202 0.3796 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573097422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:57 Heat of formation + Delta-G solvation = -70.796168 kcal Electronic energy + Delta-G solvation = -19185.826653 eV Core-core repulsion = 15942.592716 eV Total energy + Delta-G solvation = -3243.233937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.11828 -40.41807 -38.04473 -36.22327 -33.64128 -31.98050 -31.14570 -30.13190 -28.00005 -26.72784 -24.44447 -23.15299 -22.03973 -21.45572 -20.02488 -18.78275 -17.27998 -16.74607 -16.34160 -16.27387 -15.92912 -15.68653 -15.27482 -14.95489 -14.56756 -14.08454 -13.95484 -13.74046 -13.10254 -12.84331 -12.74455 -12.64083 -12.47274 -11.82770 -11.73015 -11.55441 -11.26066 -11.20006 -10.90628 -10.74776 -9.92967 -9.70407 -9.57319 -9.15331 -9.13758 -8.56125 -8.50088 -8.19696 -6.00332 -3.97935 0.85913 0.98430 2.76048 3.25975 3.33193 3.40264 3.44277 4.12109 4.38133 4.41787 4.48558 4.58342 4.70562 4.72070 4.74532 4.99389 5.00989 5.08963 5.33534 5.37317 5.51890 5.69378 5.72328 5.73790 5.80411 5.93523 6.16747 6.19855 6.39668 6.56589 6.60417 6.94795 6.95111 7.19186 7.38709 7.46193 7.55381 7.84191 8.59182 9.05433 9.62279 11.13283 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041064 B = 0.002851 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.706580 B = 9819.135788 C = 9890.716693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.152 3.848 4 C -0.218 4.218 5 C -0.033 4.033 6 C -0.145 4.145 7 C 0.100 3.900 8 N -0.685 5.685 9 C 0.056 3.944 10 C -0.100 4.100 11 C -0.013 4.013 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.144 3.856 21 F -0.131 7.131 22 C -0.190 4.190 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.340 0.660 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.016 0.984 36 H 0.009 0.991 37 H 0.262 0.738 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 -18.846 16.089 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.106 3.894 4 C -0.237 4.237 5 C -0.051 4.051 6 C -0.146 4.146 7 C -0.029 4.029 8 N -0.316 5.316 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C 0.124 3.876 21 F -0.110 7.110 22 C -0.209 4.209 23 H 0.077 0.923 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.510 -18.632 15.797 28.935 hybrid contribution 1.127 0.589 0.978 1.604 sum -14.383 -18.042 16.775 28.527 Atomic orbital electron populations 1.23112 0.77886 1.04180 1.01672 1.86065 1.21752 1.26572 1.88427 1.18591 0.91354 0.84453 0.94998 1.21286 1.00449 0.92027 1.09931 1.20721 0.92784 0.97545 0.94093 1.19829 0.94209 0.94194 1.06382 1.20754 0.98470 0.92390 0.91246 1.60628 1.46427 1.05279 1.19263 1.22179 0.96073 0.89712 0.99254 1.21446 1.00100 0.99056 0.93148 1.19545 0.95102 0.92666 0.97755 1.21159 1.36717 1.04654 0.93091 0.91018 1.25046 0.95263 0.97976 0.95363 1.69919 1.40495 1.25215 1.18797 0.86761 0.79080 0.80562 0.82754 1.20380 1.21429 1.19026 1.17163 0.76940 0.93203 1.00320 1.91523 1.28827 1.97082 1.93526 1.20184 0.92573 0.97524 1.10663 0.92277 0.88049 0.92418 0.84791 0.84440 0.94267 0.89785 0.84193 0.91344 0.95627 0.93016 0.91893 0.96604 0.97269 0.92798 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.85 10.50 -19.41 -0.20 -3.06 16 3 C 0.15 1.51 6.68 -39.22 -0.26 1.25 16 4 C -0.22 -1.91 9.04 -39.42 -0.36 -2.26 16 5 C -0.03 -0.32 9.66 -39.61 -0.38 -0.70 16 6 C -0.14 -1.66 5.40 -104.53 -0.56 -2.22 16 7 C 0.10 1.23 5.53 -4.98 -0.03 1.21 16 8 N -0.69 -10.15 6.49 -115.05 -0.75 -10.89 16 9 C 0.06 0.94 5.69 -3.82 -0.02 0.92 16 10 C -0.10 -2.04 5.41 -26.73 -0.14 -2.18 16 11 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 12 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 13 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 16 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 20 C 0.14 1.71 7.24 -39.44 -0.29 1.42 16 21 F -0.13 -1.70 16.66 2.25 0.04 -1.66 16 22 C -0.19 -2.05 9.97 -39.37 -0.39 -2.45 16 23 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 24 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 26 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 27 H 0.14 1.09 8.03 -52.49 -0.42 0.66 16 28 H 0.04 0.49 7.94 -51.93 -0.41 0.08 16 29 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 30 H 0.34 5.08 8.72 -39.29 -0.34 4.74 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 36 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -32.40 323.57 -7.53 -39.93 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.61 Total: -0.94 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.99 Total: -18.01 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.03 Total: -38.60 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.20 Total: -3.06 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.40 -7.53 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573097422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.868 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds