Wall clock time and date at job start Mon Mar 30 2020 00:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42909 * 113.99917 * 2 1 4 4 H 1.09004 * 109.46611 * 30.00538 * 3 2 1 5 5 C 1.50697 * 109.47197 * 270.00422 * 3 2 1 6 6 C 1.38244 * 119.97201 * 144.99599 * 5 3 2 7 7 C 1.38205 * 120.02298 * 179.97438 * 6 5 3 8 8 C 1.38459 * 119.97412 * 0.24026 * 7 6 5 9 9 F 1.35099 * 120.02759 * 179.72396 * 8 7 6 10 10 C 1.38466 * 119.94836 * 359.48301 * 8 7 6 11 11 C 1.38196 * 119.97140 * 0.53984 * 10 8 7 12 12 C 1.52998 * 109.47212 * 149.99794 * 3 2 1 13 13 H 1.09000 * 109.47160 * 184.99903 * 12 3 2 14 14 C 1.52998 * 109.47323 * 305.00751 * 12 3 2 15 15 N 1.46909 * 109.46744 * 65.00424 * 12 3 2 16 16 C 1.46901 * 110.99767 * 154.99943 * 15 12 3 17 17 C 1.50697 * 109.46856 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00422 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99813 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47015 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47391 * 120.00011 * 21 19 17 24 24 H 1.48500 * 109.46822 * 240.00174 * 21 19 17 25 25 H 1.09004 * 109.47198 * 299.99353 * 1 2 3 26 26 H 1.08999 * 109.47534 * 59.99954 * 1 2 3 27 27 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.98898 * 359.97438 * 6 5 3 29 29 H 1.08002 * 120.00949 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.00962 * 180.25357 * 10 8 7 31 31 H 1.08000 * 119.98525 * 179.74601 * 11 10 8 32 32 H 1.09002 * 109.47189 * 179.97438 * 14 12 3 33 33 H 1.08998 * 109.46816 * 299.99796 * 14 12 3 34 34 H 1.08995 * 109.47785 * 59.99948 * 14 12 3 35 35 H 1.00901 * 110.99898 * 278.95021 * 15 12 3 36 36 H 1.09003 * 109.47126 * 299.99606 * 16 15 12 37 37 H 1.08991 * 109.47262 * 59.99902 * 16 15 12 38 38 H 0.97002 * 119.99816 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2144 1.7645 -1.4208 6 6 2.0566 3.0991 -1.7449 7 6 2.2441 3.5213 -3.0474 8 6 2.5853 2.6061 -4.0289 9 9 2.7635 3.0167 -5.3036 10 6 2.7487 1.2706 -3.7019 11 6 2.5602 0.8507 -2.3989 12 6 3.3588 1.2634 0.7213 13 1 3.7608 2.2736 0.7995 14 6 3.1696 0.6797 2.1228 15 7 4.2938 0.4218 -0.0375 16 6 5.6860 0.7999 0.2394 17 6 6.6137 -0.0826 -0.5553 18 1 6.2096 -0.8481 -1.2011 19 6 7.9785 0.0873 -0.4579 20 7 8.4707 1.0198 0.3281 21 14 9.1285 -1.0062 -1.4435 22 1 8.3305 -1.9687 -2.2448 23 1 9.9514 -0.1678 -2.3517 24 1 10.0176 -1.7519 -0.5168 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7866 3.8121 -0.9799 29 1 2.1204 4.5639 -3.3005 30 1 3.0188 0.5566 -4.4659 31 1 2.6836 -0.1916 -2.1444 32 1 4.1305 0.6493 2.6365 33 1 2.4759 1.3042 2.6858 34 1 2.7678 -0.3304 2.0447 35 1 4.1392 -0.5562 0.1568 36 1 5.8432 1.8405 -0.0445 37 1 5.8908 0.6786 1.3030 38 1 9.4309 1.1390 0.3968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582959500.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:28 Heat of formation + Delta-G solvation = -70.498196 kcal Electronic energy + Delta-G solvation = -20602.036110 eV Core-core repulsion = 17358.815094 eV Total energy + Delta-G solvation = -3243.221016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.62077 -39.49836 -37.43699 -35.61104 -32.78903 -31.11581 -30.74014 -29.53397 -26.87304 -25.91098 -25.13397 -22.70845 -22.00569 -21.27159 -20.03058 -17.42930 -16.61726 -16.54094 -16.13884 -15.37495 -15.31204 -15.06816 -14.57756 -14.36207 -13.87572 -13.65886 -13.33883 -13.14071 -12.97375 -12.71006 -12.36416 -12.09201 -11.78385 -11.55372 -11.39409 -11.22649 -10.97629 -10.74574 -10.65369 -10.56827 -10.46928 -9.83220 -9.54115 -9.12793 -8.74715 -8.45419 -8.21163 -7.19626 -6.00260 -4.01144 1.44905 1.61314 3.32956 3.40382 3.45312 3.85153 4.00114 4.45769 4.55869 4.88956 5.02657 5.09856 5.17904 5.27551 5.36258 5.39293 5.51128 5.59902 5.63953 5.67349 5.76293 5.82660 5.86911 6.21195 6.23512 6.28085 6.37514 6.41259 6.62356 6.64454 6.83783 7.22577 7.28303 7.40851 7.48294 7.83070 8.16980 8.46737 8.66903 9.08770 9.63656 11.10951 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.006637 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.992955 B = 4217.654585 C = 5523.526084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.142 3.858 4 H 0.062 0.938 5 C -0.098 4.098 6 C -0.092 4.092 7 C -0.163 4.163 8 C 0.090 3.910 9 F -0.148 7.148 10 C -0.159 4.159 11 C -0.023 4.023 12 C 0.089 3.911 13 H 0.082 0.918 14 C -0.175 4.175 15 N -0.674 5.674 16 C 0.196 3.804 17 C -0.508 4.508 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.334 0.666 36 H 0.025 0.975 37 H -0.014 1.014 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.736 2.082 -1.493 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.084 3.916 4 H 0.080 0.920 5 C -0.098 4.098 6 C -0.111 4.111 7 C -0.182 4.182 8 C 0.071 3.929 9 F -0.127 7.127 10 C -0.178 4.178 11 C -0.041 4.041 12 C -0.022 4.022 13 H 0.100 0.900 14 C -0.234 4.234 15 N -0.304 5.304 16 C 0.069 3.931 17 C -0.547 4.547 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.043 0.957 37 H 0.004 0.996 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.473 2.389 -2.063 16.773 hybrid contribution 0.872 -0.415 0.164 0.979 sum -15.601 1.975 -1.899 15.840 Atomic orbital electron populations 1.22753 0.82124 1.02296 0.99523 1.87979 1.18566 1.27318 1.94708 1.21169 0.94916 0.84180 0.91352 0.91963 1.20197 1.00169 0.93263 0.96200 1.20759 0.99611 0.95354 0.95331 1.20907 1.05010 0.99266 0.93044 1.17731 1.02894 0.93498 0.78784 1.91454 1.93194 1.91141 1.36910 1.21165 1.04066 0.94074 0.98486 1.20770 0.92304 1.00904 0.90167 1.21581 0.91220 0.99068 0.90362 0.90015 1.22411 1.01629 1.01593 0.97775 1.60710 1.05487 1.06876 1.57286 1.19556 0.82283 0.96859 0.94396 1.21212 0.90549 1.17377 1.25575 0.91971 1.24972 0.98327 0.95642 0.95644 1.69969 1.12543 1.32849 1.38514 0.86475 0.80754 0.80485 0.79902 1.19664 1.21079 1.21172 0.94499 0.94365 0.89991 0.85825 0.85481 0.85240 0.84296 0.92295 0.93552 0.91894 0.84871 0.95716 0.99622 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.40 16 2 O -0.37 -5.06 8.56 -35.23 -0.30 -5.36 16 3 C 0.14 2.00 2.22 -27.89 -0.06 1.94 16 4 H 0.06 0.74 7.70 -51.93 -0.40 0.34 16 5 C -0.10 -1.47 4.73 -104.62 -0.49 -1.96 16 6 C -0.09 -1.27 9.68 -39.59 -0.38 -1.65 16 7 C -0.16 -2.31 10.03 -39.51 -0.40 -2.71 16 8 C 0.09 1.41 7.30 -39.42 -0.29 1.12 16 9 F -0.15 -2.34 17.27 2.25 0.04 -2.30 16 10 C -0.16 -2.50 10.03 -39.51 -0.40 -2.89 16 11 C -0.02 -0.37 8.41 -39.59 -0.33 -0.71 16 12 C 0.09 1.49 2.48 -67.71 -0.17 1.33 16 13 H 0.08 1.45 7.80 -51.93 -0.40 1.04 16 14 C -0.18 -2.66 8.96 37.16 0.33 -2.33 16 15 N -0.67 -13.76 4.85 -107.99 -0.52 -14.29 16 16 C 0.20 5.01 5.24 -4.98 -0.03 4.99 16 17 C -0.51 -14.31 9.32 -34.44 -0.32 -14.63 16 18 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.14 2.28 7.60 -52.49 -0.40 1.88 16 32 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.94 7.55 -51.93 -0.39 0.55 16 35 H 0.33 6.81 8.46 -39.29 -0.33 6.47 16 36 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 37 H -0.01 -0.38 7.43 -51.93 -0.39 -0.77 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -30.31 324.36 -7.34 -37.65 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.62 Total: 3.37 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.54 Total: -14.62 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.21 Total: -40.53 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.30 Total: -5.36 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.31 -7.34 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582959500.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.847 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds