Wall clock time and date at job start Mon Mar 30 2020 00:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47055 * 2 1 4 4 C 1.46495 * 119.99935 * 94.95842 * 3 2 1 5 5 C 1.50705 * 109.47153 * 263.58740 * 4 3 2 6 6 H 1.08003 * 119.99397 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00173 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99930 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99783 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47582 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47065 * 119.99971 * 9 7 5 12 12 H 1.48498 * 109.47238 * 239.99903 * 9 7 5 13 13 C 1.34775 * 119.99682 * 274.95136 * 3 2 1 14 14 O 1.21567 * 120.00365 * 4.32291 * 13 3 2 15 15 C 1.47717 * 119.99756 * 184.31141 * 13 3 2 16 16 C 1.41501 * 126.51543 * 174.08302 * 15 13 3 17 17 C 1.35364 * 105.50095 * 179.84641 * 16 15 13 18 18 N 1.35040 * 107.22765 * 0.41903 * 17 16 15 19 19 C 1.46500 * 124.87967 * 179.72257 * 18 17 16 20 20 O 1.42896 * 109.47536 * 359.97438 * 19 18 17 21 21 C 1.42899 * 114.00002 * 179.97438 * 20 19 18 22 22 N 1.28460 * 110.23174 * 359.72281 * 18 17 16 23 23 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47554 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.47227 * 60.00471 * 1 2 3 26 26 H 1.09003 * 109.47554 * 239.99517 * 2 1 3 27 27 H 1.09004 * 109.47227 * 119.99529 * 2 1 3 28 28 H 1.08995 * 109.47851 * 23.59008 * 4 3 2 29 29 H 1.09002 * 109.47382 * 143.59055 * 4 3 2 30 30 H 0.97000 * 120.00032 * 180.02562 * 8 7 5 31 31 H 1.07995 * 127.24782 * 0.02562 * 16 15 13 32 32 H 1.08003 * 126.38738 * 180.14069 * 17 16 15 33 33 H 1.09001 * 109.46713 * 119.98096 * 19 18 17 34 34 H 1.09008 * 109.46901 * 239.97068 * 19 18 17 35 35 H 1.09008 * 109.46927 * 60.00023 * 21 20 19 36 36 H 1.09002 * 109.47119 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.47243 * 300.00251 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3658 2.0353 1.2639 5 6 1.1981 2.8603 1.7404 6 1 0.2880 2.8936 1.1598 7 6 1.2916 3.5724 2.9173 8 7 2.4000 3.5321 3.6239 9 14 -0.1561 4.5944 3.5081 10 1 -1.2756 4.4730 2.5401 11 1 -0.5968 4.1053 4.8392 12 1 0.2535 6.0178 3.6144 13 6 2.1479 2.0501 -1.1629 14 8 1.7861 1.5361 -2.2034 15 6 2.7294 3.4079 -1.1730 16 6 3.0363 4.1840 -2.3157 17 6 3.5410 5.3460 -1.8390 18 7 3.5419 5.2587 -0.4914 19 6 4.0167 6.3065 0.4157 20 8 4.4749 7.4249 -0.3466 21 6 4.9615 8.5091 0.4470 22 7 3.0665 4.1247 -0.1194 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.6048 1.2785 2.0111 29 1 3.2300 2.6821 1.1128 30 1 2.4657 4.0328 4.4521 31 1 2.8947 3.9084 -3.3503 32 1 3.8837 6.1847 -2.4269 33 1 3.2009 6.6203 1.0669 34 1 4.8362 5.9190 1.0211 35 1 5.8006 8.1676 1.0533 36 1 5.2906 9.3179 -0.2055 37 1 4.1651 8.8686 1.0984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596891049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:51 Heat of formation + Delta-G solvation = 0.897038 kcal Electronic energy + Delta-G solvation = -21069.329536 eV Core-core repulsion = 17849.124412 eV Total energy + Delta-G solvation = -3220.205125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.48515 -40.43914 -39.00498 -36.88966 -34.59051 -33.71515 -32.15149 -31.21023 -28.95093 -28.36768 -26.65912 -25.10898 -24.58730 -22.70081 -22.12010 -20.03333 -18.76440 -18.42037 -17.82150 -17.64193 -17.29739 -16.94987 -16.29292 -16.16569 -15.47759 -15.27897 -15.00135 -14.41141 -14.08881 -14.04943 -13.87527 -13.67685 -13.38716 -13.35089 -12.97394 -12.75008 -12.68685 -12.47557 -12.17113 -11.75910 -11.58507 -11.21653 -11.12035 -10.97756 -10.44120 -10.06861 -9.91971 -9.38897 -8.06966 -6.13392 0.76045 1.24176 1.31591 1.34804 1.39409 1.49430 2.32570 2.48739 2.58072 2.72889 3.23875 3.64270 3.91536 4.00487 4.03630 4.19162 4.39063 4.45136 4.48067 4.50677 4.58422 4.81502 4.82137 4.85397 4.88375 5.01984 5.10210 5.30257 5.39583 5.53699 5.75392 5.81223 5.92427 6.06529 6.25030 6.56298 6.89149 7.13776 7.38541 7.52161 9.00389 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.008958 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.196380 B = 3124.952588 C = 4720.680255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.243 3.757 5 C -0.506 4.506 6 H 0.033 0.967 7 C 0.033 3.967 8 N -0.914 5.914 9 Si 0.937 3.063 10 H -0.284 1.284 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.594 3.406 14 O -0.587 6.587 15 C -0.045 4.045 16 C -0.204 4.204 17 C 0.004 3.996 18 N -0.301 5.301 19 C 0.310 3.690 20 O -0.406 6.406 21 C 0.033 3.967 22 N -0.219 5.219 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.263 0.737 31 H 0.170 0.830 32 H 0.212 0.788 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.121 0.879 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 7.478 -4.847 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 N -0.320 5.320 4 C 0.123 3.877 5 C -0.545 4.545 6 H 0.052 0.948 7 C -0.167 4.167 8 N -0.554 5.554 9 Si 0.763 3.237 10 H -0.209 1.209 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.381 3.619 14 O -0.469 6.469 15 C -0.205 4.205 16 C -0.232 4.232 17 C -0.137 4.137 18 N -0.091 5.091 19 C 0.151 3.849 20 O -0.325 6.325 21 C -0.063 4.063 22 N -0.055 5.055 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.187 0.813 32 H 0.229 0.771 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.451 7.367 -4.117 10.047 hybrid contribution -0.901 0.590 0.070 1.079 sum 4.550 7.957 -4.047 10.020 Atomic orbital electron populations 1.21987 0.95646 1.02539 1.00912 1.21513 0.95172 0.81682 1.02619 1.48250 1.62017 1.14165 1.07555 1.19529 0.97183 0.92169 0.78859 1.21342 0.99008 1.28015 1.06133 0.94835 1.25299 0.97521 0.97285 0.96557 1.70014 1.26817 1.43145 1.15446 0.85852 0.80487 0.79298 0.78013 1.20912 1.20348 1.20167 1.17206 0.77862 0.83485 0.83307 1.90625 1.53769 1.69437 1.33060 1.22067 1.09581 0.97176 0.91665 1.21927 1.07510 0.94130 0.99646 1.23173 1.05026 1.01153 0.84382 1.45957 1.44034 1.12310 1.06761 1.22179 0.98905 0.79509 0.84307 1.87652 1.83129 1.26441 1.35255 1.23093 0.98880 0.87353 0.96924 1.74410 1.12543 0.93272 1.25313 0.89238 0.93514 0.94568 0.90641 0.89391 0.96626 0.92216 0.92824 0.81274 0.77083 0.90193 0.88929 0.92027 0.86130 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.20 71.98 0.73 -4.89 16 2 C 0.11 4.37 6.09 86.38 0.53 4.90 16 3 N -0.59 -27.62 2.48 -829.73 -2.06 -29.68 16 4 C 0.24 12.49 4.81 85.64 0.41 12.90 16 5 C -0.51 -27.64 8.48 25.60 0.22 -27.42 16 6 H 0.03 1.94 7.81 -2.91 -0.02 1.92 16 7 C 0.03 1.75 5.46 84.66 0.46 2.22 16 8 N -0.91 -50.00 13.29 21.45 0.28 -49.72 16 9 Si 0.94 43.04 29.54 68.60 2.03 45.06 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 13 C 0.59 28.59 7.58 86.75 0.66 29.25 16 14 O -0.59 -29.15 16.63 -3.93 -0.07 -29.22 16 15 C -0.05 -2.05 6.81 42.46 0.29 -1.76 16 16 C -0.20 -7.56 10.81 22.41 0.24 -7.31 16 17 C 0.00 0.14 10.83 83.54 0.90 1.05 16 18 N -0.30 -11.05 3.70 -463.57 -1.71 -12.76 16 19 C 0.31 9.08 7.53 127.77 0.96 10.04 16 20 O -0.41 -9.34 9.75 -148.98 -1.45 -10.79 16 21 C 0.03 0.47 11.01 113.37 1.25 1.72 16 22 N -0.22 -9.91 7.84 -48.17 -0.38 -10.29 16 23 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.08 2.78 7.64 -2.39 -0.02 2.76 16 27 H 0.09 3.11 7.78 -2.38 -0.02 3.09 16 28 H 0.02 0.84 7.78 -2.39 -0.02 0.82 16 29 H 0.06 3.24 5.31 -2.39 -0.01 3.22 16 30 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 32 H 0.21 4.97 7.71 -2.91 -0.02 4.95 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -68.40 319.70 4.36 -64.04 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.06 Total: 12.67 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 6.66 Total: 20.68 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.87 Total: -102.45 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.52 Total: -40.01 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.40 4.36 -64.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.941 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds