Wall clock time and date at job start Mon Mar 30 2020 00:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00221 * 2 1 4 4 N 1.46498 * 109.47334 * 180.02562 * 3 2 1 5 5 C 1.35032 * 124.88637 * 0.02562 * 4 3 2 6 6 C 1.35362 * 107.22885 * 179.74364 * 5 4 3 7 7 C 1.41497 * 105.50595 * 0.35594 * 6 5 4 8 8 C 1.47709 * 126.52168 * 179.90161 * 7 6 5 9 9 O 1.21572 * 119.99717 * 353.60027 * 8 7 6 10 10 N 1.34774 * 120.00242 * 173.59555 * 8 7 6 11 11 C 1.46499 * 120.00127 * 3.37281 * 10 8 7 12 12 C 1.46502 * 120.00165 * 183.37150 * 10 8 7 13 13 H 1.09006 * 109.46658 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47168 * 120.00031 * 12 10 8 15 15 C 1.50694 * 109.47193 * 240.00225 * 12 10 8 16 16 H 1.08000 * 119.99822 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00047 * 179.97438 * 15 12 10 18 18 N 1.31515 * 119.99649 * 179.97438 * 17 15 12 19 19 Si 1.86796 * 120.00062 * 359.97438 * 17 15 12 20 20 H 1.48504 * 109.47018 * 89.99800 * 19 17 15 21 21 H 1.48496 * 109.47429 * 209.99884 * 19 17 15 22 22 H 1.48502 * 109.47122 * 330.00327 * 19 17 15 23 23 N 1.28472 * 124.88635 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46760 * 300.00129 * 1 2 3 26 26 H 1.09001 * 109.47054 * 59.99550 * 1 2 3 27 27 H 1.09001 * 109.47207 * 60.00123 * 3 2 1 28 28 H 1.09001 * 109.47286 * 300.00293 * 3 2 1 29 29 H 1.08001 * 126.38036 * 359.97438 * 5 4 3 30 30 H 1.08005 * 127.24743 * 180.22933 * 6 5 4 31 31 H 1.08993 * 109.46944 * 84.22478 * 11 10 8 32 32 H 1.08997 * 109.46990 * 204.23015 * 11 10 8 33 33 H 1.09000 * 109.46737 * 324.22778 * 11 10 8 34 34 H 1.09000 * 109.46812 * 180.02562 * 14 12 10 35 35 H 1.08999 * 109.47027 * 300.00217 * 14 12 10 36 36 H 1.08996 * 109.47052 * 60.00377 * 14 12 10 37 37 H 0.97007 * 119.99662 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1897 -0.0006 5 6 4.1531 0.0246 -0.0016 6 6 5.4713 0.3320 -0.0077 7 6 5.5300 1.7458 -0.0018 8 6 6.7525 2.5748 -0.0030 9 8 7.8433 2.0495 0.1078 10 7 6.6588 3.9135 -0.1270 11 6 5.3422 4.5533 -0.1863 12 6 7.8735 4.7291 -0.2025 13 1 8.7493 4.0827 -0.1430 14 6 7.8932 5.4932 -1.5278 15 6 7.8929 5.7086 0.9425 16 1 7.0813 5.7226 1.6549 17 6 8.9467 6.5870 1.0806 18 7 8.9632 7.4422 2.0795 19 14 10.3507 6.5623 -0.1512 20 1 10.0457 7.4922 -1.2682 21 1 11.6051 6.9887 0.5193 22 1 10.5173 5.1863 -0.6843 23 7 4.2864 2.1823 -0.0012 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.7266 -0.9677 -0.0017 30 1 6.3032 -0.3568 -0.0135 31 1 4.9704 4.7137 0.8256 32 1 5.4267 5.5117 -0.6986 33 1 4.6501 3.9104 -0.7300 34 1 8.7972 6.0996 -1.5841 35 1 7.8792 4.7846 -2.3560 36 1 7.0175 6.1394 -1.5877 37 1 9.7045 8.0604 2.1765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597146063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:22 Heat of formation + Delta-G solvation = 35.428290 kcal Electronic energy + Delta-G solvation = -20439.758440 eV Core-core repulsion = 17221.050703 eV Total energy + Delta-G solvation = -3218.707737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.51436 -38.91141 -38.37794 -35.42620 -33.02532 -32.40447 -30.84892 -29.99133 -27.76507 -26.18053 -25.91804 -25.03683 -23.19567 -21.20842 -20.53281 -18.62946 -17.63144 -17.12759 -16.87676 -16.73323 -15.98450 -15.52724 -15.38176 -14.70793 -14.39167 -13.92761 -13.37138 -13.12660 -12.93947 -12.80884 -12.77416 -12.21036 -12.11306 -12.06493 -11.76262 -11.63376 -11.07690 -10.67548 -10.59142 -10.24381 -10.07041 -9.61147 -9.32049 -9.16661 -9.05885 -8.89311 -8.56981 -7.60495 -6.07762 -4.07758 1.84660 1.97539 2.38786 3.28734 3.31945 3.42100 3.45636 3.88549 3.99987 4.41559 4.45247 4.59494 4.67428 4.79163 4.82916 4.98637 5.09435 5.24552 5.39193 5.85228 5.92614 6.04169 6.13598 6.27551 6.30889 6.38966 6.48236 6.56449 6.67609 6.83947 6.92182 7.21346 7.44550 7.70319 8.04009 8.29966 8.54472 8.92730 8.99476 9.53284 11.05147 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038497 B = 0.004300 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.160117 B = 6509.408814 C = 6823.891645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.398 6.398 3 C 0.307 3.693 4 N -0.302 5.302 5 C -0.001 4.001 6 C -0.188 4.188 7 C 0.009 3.991 8 C 0.589 3.411 9 O -0.545 6.545 10 N -0.572 5.572 11 C 0.086 3.914 12 C 0.229 3.771 13 H 0.064 0.936 14 C -0.161 4.161 15 C -0.524 4.524 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.897 5.897 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.262 1.262 23 N -0.256 5.256 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.171 -13.122 -6.576 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.316 6.316 3 C 0.147 3.853 4 N -0.091 5.091 5 C -0.143 4.143 6 C -0.216 4.216 7 C -0.152 4.152 8 C 0.374 3.626 9 O -0.422 6.422 10 N -0.301 5.301 11 C -0.057 4.057 12 C 0.127 3.873 13 H 0.082 0.918 14 C -0.219 4.219 15 C -0.562 4.562 16 H 0.097 0.903 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.187 1.187 23 N -0.092 5.092 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.197 0.803 30 H 0.179 0.821 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.174 -12.407 -6.423 22.924 hybrid contribution 0.829 -0.311 -0.487 1.010 sum -17.346 -12.718 -6.910 22.591 Atomic orbital electron populations 1.22810 0.77628 1.04038 1.01017 1.87706 1.21859 1.26346 1.95714 1.22166 0.74744 0.85323 1.03048 1.45456 1.06261 1.04435 1.52960 1.22734 0.91824 0.92685 1.07083 1.21796 0.96307 0.94519 1.08962 1.22319 0.91029 0.93976 1.07914 1.16941 0.85977 0.81872 0.77854 1.90737 1.27026 1.72602 1.51850 1.47748 1.08708 1.04950 1.68727 1.21871 0.83796 0.98310 1.01753 1.19345 0.83804 0.90485 0.93678 0.91848 1.22465 1.01351 0.99939 0.98160 1.21169 1.08423 1.16544 1.10109 0.90306 1.24866 0.97624 0.94845 0.95453 1.69883 1.32123 1.21009 1.30411 0.86914 0.81728 0.79156 0.80901 1.20426 1.22171 1.18688 1.73823 1.00231 1.14446 1.20687 0.88336 0.92989 0.93034 0.89589 0.89690 0.80261 0.82088 0.93186 0.91286 0.90380 0.93086 0.94724 0.92453 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 11.01 101.05 1.11 1.27 16 2 O -0.40 -3.09 9.75 -35.23 -0.34 -3.43 16 3 C 0.31 2.62 7.53 59.85 0.45 3.08 16 4 N -0.30 -3.95 3.70 -66.13 -0.24 -4.20 16 5 C 0.00 -0.01 10.83 -17.17 -0.19 -0.20 16 6 C -0.19 -2.94 10.81 -39.37 -0.43 -3.37 16 7 C 0.01 0.16 6.82 -82.77 -0.56 -0.40 16 8 C 0.59 13.35 7.68 -12.39 -0.10 13.25 16 9 O -0.55 -13.93 16.26 5.30 0.09 -13.85 16 10 N -0.57 -13.02 2.75 -176.43 -0.49 -13.50 16 11 C 0.09 1.65 8.84 59.85 0.53 2.18 16 12 C 0.23 5.82 2.22 -69.08 -0.15 5.66 16 13 H 0.06 1.77 5.96 -51.93 -0.31 1.46 16 14 C -0.16 -3.62 8.66 37.16 0.32 -3.30 16 15 C -0.52 -15.11 8.95 -34.44 -0.31 -15.41 16 16 H 0.08 2.46 7.89 -52.49 -0.41 2.04 16 17 C 0.07 2.18 5.45 -17.82 -0.10 2.09 16 18 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 19 Si 0.88 22.34 24.38 -169.99 -4.14 18.20 16 20 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 22 H -0.26 -6.54 6.53 56.52 0.37 -6.18 16 23 N -0.26 -4.17 8.49 33.42 0.28 -3.88 16 24 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.18 1.74 7.71 -52.49 -0.40 1.33 16 30 H 0.16 2.33 8.06 -52.48 -0.42 1.91 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.27 6.44 -51.93 -0.33 0.94 16 33 H 0.08 1.32 5.34 -51.93 -0.28 1.04 16 34 H 0.05 1.18 3.28 -51.93 -0.17 1.01 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 1.20 6.67 -51.93 -0.35 0.85 16 37 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -35.50 305.24 -3.71 -39.21 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.82 Total: -1.14 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 0.58 Total: 4.85 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.33 Total: -48.44 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.26 Total: -17.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.50 -3.71 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.639 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds