Wall clock time and date at job start Mon Mar 30 2020 00:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.46886 * 2 1 4 4 C 1.42898 * 113.99884 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46770 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46703 * 180.02562 * 5 4 3 7 7 C 1.34282 * 125.75238 * 125.00429 * 6 5 4 8 8 C 1.38103 * 107.40610 * 180.02562 * 7 6 5 9 9 C 1.47361 * 126.42293 * 179.97438 * 8 7 6 10 10 O 1.21631 * 120.00033 * 350.57223 * 9 8 7 11 11 N 1.34776 * 120.00182 * 170.56755 * 9 8 7 12 12 C 1.46509 * 120.00003 * 352.13783 * 11 9 8 13 13 C 1.36977 * 120.00164 * 172.13224 * 11 9 8 14 14 H 1.08004 * 120.00118 * 38.04144 * 13 11 9 15 15 C 1.38978 * 120.00343 * 217.75892 * 13 11 9 16 16 N 1.31412 * 119.99424 * 11.87243 * 15 13 11 17 17 Si 1.86801 * 120.00231 * 191.87356 * 15 13 11 18 18 H 1.48495 * 109.47168 * 90.00208 * 17 15 13 19 19 H 1.48502 * 109.46820 * 210.00331 * 17 15 13 20 20 H 1.48496 * 109.47047 * 329.99703 * 17 15 13 21 21 C 1.41321 * 107.15729 * 0.24110 * 8 7 6 22 22 N 1.30443 * 108.02579 * 359.59011 * 21 8 7 23 23 H 1.09006 * 109.47286 * 60.00652 * 1 2 3 24 24 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47638 * 300.00089 * 1 2 3 26 26 H 1.08991 * 109.47572 * 240.00008 * 2 1 3 27 27 H 1.09006 * 109.47286 * 119.99348 * 2 1 3 28 28 H 1.08996 * 109.47250 * 59.99827 * 4 3 2 29 29 H 1.08997 * 109.47514 * 299.99712 * 4 3 2 30 30 H 1.08998 * 109.46857 * 60.00235 * 5 4 3 31 31 H 1.08999 * 109.46669 * 299.99688 * 5 4 3 32 32 H 1.08001 * 126.29783 * 0.02649 * 7 6 5 33 33 H 1.08994 * 109.47265 * 204.37927 * 12 11 9 34 34 H 1.08999 * 109.46535 * 324.38095 * 12 11 9 35 35 H 1.08996 * 109.47241 * 84.37457 * 12 11 9 36 36 H 0.97003 * 119.99673 * 179.97438 * 16 15 13 37 37 H 1.08005 * 125.98734 * 179.76478 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9386 -0.0001 6 7 5.2856 3.0543 -0.0001 7 6 6.0184 3.7390 -0.8931 8 6 7.3448 3.5936 -0.5373 9 6 8.5063 4.1738 -1.2342 10 8 8.3607 4.7102 -2.3162 11 7 9.7300 4.1103 -0.6729 12 6 9.8816 3.6220 0.7001 13 6 10.8319 4.5022 -1.3859 14 1 10.7732 5.3561 -2.0447 15 6 12.0270 3.8047 -1.2574 16 7 12.0469 2.6431 -0.6432 17 14 13.6050 4.5183 -1.9575 18 1 14.2701 5.3548 -0.9264 19 1 14.5123 3.4135 -2.3594 20 1 13.2870 5.3538 -3.1432 21 6 7.3800 2.7790 0.6170 22 7 6.1521 2.4694 0.9301 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8339 0.9766 -0.8891 29 1 3.8332 0.9769 0.8908 30 1 3.4220 3.4225 0.8894 31 1 3.4228 3.4215 -0.8906 32 1 5.6400 4.3002 -1.7347 33 1 10.7981 4.0256 1.1302 34 1 9.0278 3.9438 1.2965 35 1 9.9314 2.5332 0.6951 36 1 12.8811 2.1560 -0.5538 37 1 8.2678 2.4694 1.1485 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598897164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:45 Heat of formation + Delta-G solvation = -9.716063 kcal Electronic energy + Delta-G solvation = -19796.020699 eV Core-core repulsion = 16575.355356 eV Total energy + Delta-G solvation = -3220.665343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.34931 -39.88982 -39.11721 -36.59469 -35.10431 -33.61842 -32.28624 -31.23882 -29.73604 -28.07429 -26.65315 -24.58265 -23.74985 -23.23578 -21.61160 -20.62666 -19.01089 -18.36112 -17.56104 -17.48107 -17.03105 -16.49567 -16.39825 -15.91396 -15.66123 -15.37187 -14.96596 -14.74380 -14.35782 -13.95959 -13.68012 -13.30852 -13.28303 -13.18580 -12.90474 -12.87312 -12.55642 -12.34043 -12.25245 -12.14566 -12.08719 -11.83982 -10.92713 -10.69625 -10.50799 -10.41738 -9.66406 -9.40345 -8.31046 -6.05007 0.60921 1.22532 1.29794 1.43992 1.47592 1.56951 2.32070 2.63459 2.65761 3.11677 3.15302 3.60428 3.83964 3.91361 3.97812 4.13830 4.21456 4.24984 4.32190 4.43003 4.46798 4.59916 4.60611 4.70119 4.80658 4.86300 4.95741 5.01786 5.23617 5.26124 5.45195 5.49912 5.87757 6.08261 6.23612 6.51528 6.61788 7.20881 7.47746 8.09612 8.74579 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.048950 B = 0.003343 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.876475 B = 8374.546325 C = 8546.182205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.399 6.399 4 C 0.060 3.940 5 C 0.133 3.867 6 N -0.358 5.358 7 C 0.125 3.875 8 C -0.294 4.294 9 C 0.524 3.476 10 O -0.635 6.635 11 N -0.459 5.459 12 C 0.111 3.889 13 C -0.345 4.345 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.896 5.896 17 Si 0.989 3.011 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.067 3.933 22 N -0.314 5.314 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.205 0.795 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.273 0.727 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.028 -5.020 5.187 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.318 6.318 4 C -0.018 4.018 5 C 0.013 3.987 6 N -0.139 5.139 7 C -0.026 4.026 8 C -0.309 4.309 9 C 0.315 3.685 10 O -0.523 6.523 11 N -0.177 5.177 12 C -0.032 4.032 13 C -0.473 4.473 14 H 0.084 0.916 15 C -0.201 4.201 16 N -0.533 5.533 17 Si 0.813 3.187 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.119 4.119 22 N -0.134 5.134 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.222 0.778 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.986 -5.418 5.590 20.520 hybrid contribution 1.788 0.356 -0.950 2.056 sum -17.197 -5.062 4.639 18.518 Atomic orbital electron populations 1.21764 0.92194 1.03543 1.03012 1.22710 0.96690 0.82321 1.00905 1.87758 1.19783 1.28576 1.95662 1.22467 0.81851 0.96010 1.01434 1.21716 0.72333 0.97447 1.07233 1.48473 1.07300 1.38013 1.20072 1.23140 0.90087 0.94785 0.94614 1.20482 0.93835 1.12931 1.03670 1.17893 0.83591 0.82345 0.84656 1.90525 1.86192 1.50735 1.24852 1.43394 1.04801 1.57055 1.12442 1.21847 1.00267 0.98871 0.82198 1.19442 0.89055 1.12777 1.26051 0.91586 1.26232 1.02434 0.94568 0.96864 1.69991 1.28570 1.12217 1.42515 0.85001 0.77085 0.77963 0.78680 1.18802 1.20008 1.20004 1.25055 0.96363 0.95353 0.95114 1.77041 1.00250 1.21650 1.14493 0.91941 0.89165 0.91933 0.92766 0.92694 0.93079 0.92447 0.87402 0.85061 0.77784 0.93016 0.91154 0.92773 0.91720 0.77425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.40 -7.60 10.34 -148.98 -1.54 -9.14 16 4 C 0.06 1.19 6.11 71.98 0.44 1.63 16 5 C 0.13 2.56 6.86 86.38 0.59 3.15 16 6 N -0.36 -10.08 3.65 -346.22 -1.26 -11.34 16 7 C 0.13 4.09 11.27 84.29 0.95 5.04 16 8 C -0.29 -12.15 5.88 -20.15 -0.12 -12.27 16 9 C 0.52 27.59 7.59 86.64 0.66 28.25 16 10 O -0.63 -37.58 16.77 -4.13 -0.07 -37.65 16 11 N -0.46 -24.72 2.93 -662.68 -1.94 -26.66 16 12 C 0.11 4.95 7.03 127.77 0.90 5.85 16 13 C -0.35 -20.13 8.94 84.07 0.75 -19.38 16 14 H 0.07 4.08 7.65 -2.91 -0.02 4.06 16 15 C 0.00 0.08 5.06 84.93 0.43 0.51 16 16 N -0.90 -48.67 11.73 21.67 0.25 -48.41 16 17 Si 0.99 43.07 29.57 68.60 2.03 45.10 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 C 0.07 2.44 9.86 85.66 0.84 3.29 16 22 N -0.31 -10.27 12.33 -56.25 -0.69 -10.96 16 23 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 24 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.13 1.88 8.06 -2.39 -0.02 1.86 16 32 H 0.21 5.64 8.06 -2.91 -0.02 5.62 16 33 H 0.05 2.37 7.60 -2.39 -0.02 2.35 16 34 H 0.07 2.65 5.67 -2.39 -0.01 2.63 16 35 H 0.05 2.42 6.72 -2.39 -0.02 2.41 16 36 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.21 7.13 4.62 -2.91 -0.01 7.11 16 Total: -1.00 -72.77 316.01 4.51 -68.27 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.07 Total: 14.42 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 6.67 Total: 16.38 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.65 Total: -97.38 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.61 Total: -46.80 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.77 4.51 -68.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598897164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.552 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds