Wall clock time and date at job start Mon Mar 30 2020 00:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47047 * 2 1 4 4 C 1.36984 * 119.99938 * 270.08443 * 3 2 1 5 5 H 1.08001 * 119.99740 * 195.08943 * 4 3 2 6 6 C 1.38972 * 119.99708 * 15.36718 * 4 3 2 7 7 N 1.31408 * 120.00311 * 358.75326 * 6 4 3 8 8 Si 1.86807 * 119.99745 * 178.75589 * 6 4 3 9 9 H 1.48502 * 109.46994 * 89.99853 * 8 6 4 10 10 H 1.48500 * 109.46898 * 209.99834 * 8 6 4 11 11 H 1.48500 * 109.47054 * 329.99930 * 8 6 4 12 12 C 1.34776 * 120.00106 * 90.08204 * 3 2 1 13 13 O 1.21630 * 119.99888 * 174.50214 * 12 3 2 14 14 C 1.47362 * 119.99848 * 354.51077 * 12 3 2 15 15 C 1.41318 * 126.42208 * 352.28193 * 14 12 3 16 16 N 1.30444 * 108.02754 * 179.97438 * 15 14 12 17 17 N 1.39933 * 108.91434 * 359.97438 * 16 15 14 18 18 C 1.46494 * 125.75215 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47238 * 304.97945 * 18 17 16 20 20 O 1.42902 * 109.47189 * 179.97438 * 19 18 17 21 21 C 1.42900 * 114.00032 * 179.97438 * 20 19 18 22 22 C 1.34294 * 108.49577 * 359.77184 * 17 16 15 23 23 H 1.09003 * 109.47045 * 60.00055 * 1 2 3 24 24 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47248 * 300.00473 * 1 2 3 26 26 H 1.08994 * 109.47189 * 240.00250 * 2 1 3 27 27 H 1.08998 * 109.47416 * 119.99700 * 2 1 3 28 28 H 0.97006 * 120.00226 * 180.02562 * 7 6 4 29 29 H 1.08003 * 125.98673 * 359.94000 * 15 14 12 30 30 H 1.08998 * 109.46935 * 64.97912 * 18 17 16 31 31 H 1.08998 * 109.47508 * 184.97527 * 18 17 16 32 32 H 1.08998 * 109.47130 * 299.99847 * 19 18 17 33 33 H 1.09000 * 109.47517 * 60.00115 * 19 18 17 34 34 H 1.09001 * 109.47303 * 179.97438 * 21 20 19 35 35 H 1.08998 * 109.47506 * 300.00396 * 21 20 19 36 36 H 1.09002 * 109.46887 * 60.00142 * 21 20 19 37 37 H 1.07999 * 126.29544 * 180.25175 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2450 2.0276 -1.1863 5 1 2.8252 2.9384 -1.2028 6 6 1.7234 1.5144 -2.3678 7 7 1.0336 0.3961 -2.3505 8 14 2.0031 2.4144 -3.9807 9 1 3.2548 1.9233 -4.6110 10 1 0.8582 2.1635 -4.8926 11 1 2.1186 3.8719 -3.7207 12 6 2.2445 2.0161 1.1672 13 8 2.7437 3.1252 1.1694 14 6 1.8872 1.3663 2.4406 15 6 1.1686 0.1592 2.5940 16 7 1.0555 -0.0839 3.8705 17 7 1.6872 0.9401 4.5850 18 6 1.7812 1.0338 6.0439 19 6 0.3783 0.9660 6.6508 20 8 0.4701 1.0569 8.0739 21 6 -0.7919 1.0037 8.7423 22 6 2.1977 1.8194 3.7077 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.6698 0.0377 -3.1753 29 1 0.7805 -0.4543 1.7943 30 1 2.3815 0.2069 6.4232 31 1 2.2503 1.9788 6.3179 32 1 -0.2220 1.7930 6.2715 33 1 -0.0908 0.0210 6.3769 34 1 -0.6365 1.0783 9.8186 35 1 -1.4160 1.8319 8.4067 36 1 -1.2858 0.0598 8.5114 37 1 2.7476 2.7171 3.9489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601016451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:27 Heat of formation + Delta-G solvation = 21.904879 kcal Electronic energy + Delta-G solvation = -20429.472918 eV Core-core repulsion = 17210.178762 eV Total energy + Delta-G solvation = -3219.294156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.39463 -40.04124 -38.94348 -37.11098 -35.03658 -33.57329 -31.65248 -31.28460 -30.01597 -27.41067 -26.75941 -24.55313 -24.07986 -23.07463 -21.76016 -20.59175 -18.94052 -18.36112 -17.54242 -17.34785 -16.91453 -16.51334 -16.29920 -15.82021 -15.65705 -15.51970 -15.12076 -14.58573 -14.27704 -14.17140 -13.55729 -13.20605 -13.13992 -12.89696 -12.73521 -12.66218 -12.52509 -12.33615 -12.10474 -11.98171 -11.85076 -11.75974 -10.78831 -10.76277 -10.44724 -10.35605 -9.63984 -9.54455 -8.12296 -5.83455 0.62373 1.22895 1.31426 1.46044 1.49695 1.58293 2.32122 2.61902 2.75402 3.13752 3.26733 3.62031 3.85922 3.93661 3.98721 4.22012 4.25115 4.37363 4.47380 4.49232 4.54760 4.64517 4.72186 4.77133 4.82799 4.94536 4.97125 5.20225 5.45522 5.47553 5.65767 5.88612 6.03018 6.04725 6.19156 6.55103 6.66032 7.23898 7.56288 8.12609 8.73479 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043587 B = 0.004071 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.233571 B = 6876.437001 C = 7236.107497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.109 3.891 3 N -0.448 5.448 4 C -0.335 4.335 5 H 0.073 0.927 6 C -0.003 4.003 7 N -0.878 5.878 8 Si 0.991 3.009 9 H -0.271 1.271 10 H -0.270 1.270 11 H -0.281 1.281 12 C 0.505 3.495 13 O -0.646 6.646 14 C -0.289 4.289 15 C 0.053 3.947 16 N -0.315 5.315 17 N -0.359 5.359 18 C 0.131 3.869 19 C 0.058 3.942 20 O -0.403 6.403 21 C 0.027 3.973 22 C 0.119 3.881 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.271 0.729 29 H 0.222 0.778 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 -3.548 15.675 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 N -0.165 5.165 4 C -0.463 4.463 5 H 0.091 0.909 6 C -0.204 4.204 7 N -0.518 5.518 8 Si 0.815 3.185 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.206 1.206 12 C 0.296 3.704 13 O -0.537 6.537 14 C -0.304 4.304 15 C -0.132 4.132 16 N -0.136 5.136 17 N -0.140 5.140 18 C 0.011 3.989 19 C -0.019 4.019 20 O -0.321 6.321 21 C -0.069 4.069 22 C -0.032 4.032 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.237 0.763 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.849 -3.964 16.653 17.546 hybrid contribution 0.135 1.020 -1.723 2.007 sum -3.714 -2.945 14.929 15.664 Atomic orbital electron populations 1.22205 0.95625 1.01410 1.00871 1.22120 0.95355 0.82269 1.01563 1.43764 1.56015 1.12540 1.04165 1.19692 1.32756 1.08895 0.84967 0.90925 1.25951 0.95268 0.97364 1.01794 1.70191 1.34060 1.19183 1.28358 0.84967 0.78188 0.78009 0.77313 1.19649 1.19477 1.20626 1.17625 0.83828 0.85296 0.83694 1.90514 1.52053 1.23038 1.88076 1.20440 1.14559 1.01649 0.93737 1.25594 0.96932 0.95951 0.94757 1.77039 1.20203 1.11275 1.05045 1.48464 1.41606 1.17019 1.06923 1.21712 0.98051 1.06956 0.72137 1.22522 0.96412 1.01484 0.81504 1.87745 1.31642 1.95116 1.17642 1.22978 0.84545 1.00881 0.98524 1.23091 0.96474 0.95600 0.88000 0.91357 0.91207 0.95088 0.88517 0.91784 0.91829 0.76261 0.87537 0.85122 0.92948 0.92394 0.87490 0.93336 0.93304 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 8.11 71.98 0.58 -5.32 16 2 C 0.11 4.94 4.79 86.38 0.41 5.35 16 3 N -0.45 -23.95 2.62 -639.30 -1.68 -25.63 16 4 C -0.34 -19.23 9.48 84.06 0.80 -18.43 16 5 H 0.07 4.48 7.24 -2.91 -0.02 4.46 16 6 C 0.00 -0.15 5.38 84.93 0.46 0.31 16 7 N -0.88 -43.72 7.37 21.67 0.16 -43.56 16 8 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.50 26.61 7.61 86.64 0.66 27.27 16 13 O -0.65 -38.32 16.53 -4.12 -0.07 -38.39 16 14 C -0.29 -12.14 5.93 -20.15 -0.12 -12.26 16 15 C 0.05 1.98 8.60 85.66 0.74 2.71 16 16 N -0.31 -10.52 12.33 -56.26 -0.69 -11.21 16 17 N -0.36 -10.35 3.65 -346.24 -1.26 -11.61 16 18 C 0.13 2.59 6.86 86.38 0.59 3.18 16 19 C 0.06 1.15 6.11 71.98 0.44 1.59 16 20 O -0.40 -7.54 10.70 -148.98 -1.59 -9.14 16 21 C 0.03 0.35 11.01 113.37 1.25 1.60 16 22 C 0.12 4.01 11.26 84.28 0.95 4.96 16 23 H 0.07 3.24 6.05 -2.39 -0.01 3.23 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.03 1.23 6.34 -2.39 -0.02 1.22 16 26 H 0.10 4.72 5.90 -2.39 -0.01 4.71 16 27 H 0.06 2.60 4.71 -2.39 -0.01 2.59 16 28 H 0.27 12.65 8.31 -92.70 -0.77 11.88 16 29 H 0.22 7.83 3.25 -2.91 -0.01 7.82 16 30 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.13 1.92 8.06 -2.39 -0.02 1.90 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.20 5.79 8.06 -2.91 -0.02 5.76 16 Total: -1.00 -69.14 304.13 4.74 -64.41 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.09 Total: 19.84 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.76 Total: 10.97 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -3.47 Total: -92.01 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.66 Total: -47.53 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.14 4.74 -64.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601016451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.311 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds