Wall clock time and date at job start Mon Mar 30 2020 00:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42904 * 113.99592 * 2 1 4 4 C 1.53001 * 109.46983 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47340 * 180.02562 * 4 3 2 6 6 C 1.34255 * 125.75345 * 124.99769 * 5 4 3 7 7 C 1.38049 * 107.41834 * 180.02562 * 6 5 4 8 8 C 1.47423 * 126.41350 * 179.97438 * 7 6 5 9 9 O 1.21605 * 120.00094 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99703 * 179.72631 * 8 7 6 11 11 C 1.46503 * 120.00189 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47102 * 34.99603 * 11 10 8 13 13 C 1.52996 * 109.46963 * 274.99612 * 11 10 8 14 14 C 1.50699 * 109.47510 * 154.99518 * 11 10 8 15 15 H 1.08007 * 119.99616 * 35.00297 * 14 11 10 16 16 C 1.37879 * 120.00235 * 215.00357 * 14 11 10 17 17 N 1.31513 * 119.99876 * 184.91324 * 16 14 11 18 18 Si 1.86799 * 120.00030 * 4.91575 * 16 14 11 19 19 H 1.48504 * 109.47069 * 84.83112 * 18 16 14 20 20 H 1.48492 * 109.47042 * 204.83248 * 18 16 14 21 21 H 1.48501 * 109.46841 * 324.83420 * 18 16 14 22 22 C 1.41294 * 107.16659 * 0.22874 * 7 6 5 23 23 N 1.30442 * 108.02201 * 359.61502 * 22 7 6 24 24 H 1.08993 * 109.46594 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46653 * 299.99492 * 1 2 3 26 26 H 1.08993 * 109.47271 * 59.99362 * 1 2 3 27 27 H 1.09003 * 109.46778 * 60.00298 * 3 2 1 28 28 H 1.08998 * 109.47228 * 300.00626 * 3 2 1 29 29 H 1.09008 * 109.46755 * 60.00291 * 4 3 2 30 30 H 1.08996 * 109.46866 * 300.00475 * 4 3 2 31 31 H 1.08000 * 126.29533 * 359.97438 * 6 5 4 32 32 H 0.96997 * 120.00380 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.47608 * 295.03220 * 13 11 10 34 34 H 1.08999 * 109.47114 * 55.03767 * 13 11 10 35 35 H 1.09007 * 109.46906 * 175.03248 * 13 11 10 36 36 H 0.97002 * 119.99680 * 179.97438 * 17 16 14 37 37 H 1.07998 * 125.98184 * 179.77684 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0216 2.9850 0.8924 7 6 5.3265 4.2839 0.5377 8 6 6.2616 5.1850 1.2354 9 8 6.8508 4.8005 2.2273 10 7 6.4674 6.4334 0.7710 11 6 7.3963 7.3292 1.4645 12 1 8.2283 6.7502 1.8655 13 6 6.6663 8.0334 2.6099 14 6 7.9207 8.3573 0.4955 15 1 7.2800 8.7394 -0.2855 16 6 9.2183 8.8102 0.6060 17 7 9.6464 9.7763 -0.1769 18 14 10.3681 8.0515 1.8677 19 1 10.9901 6.8290 1.2986 20 1 11.4292 9.0284 2.2208 21 1 9.5988 7.6940 3.0865 22 6 4.5698 4.5897 -0.6157 23 7 3.8681 3.5358 -0.9292 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8464 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8567 0.6441 -0.8910 30 1 3.8574 0.6437 0.8890 31 1 5.4246 2.4409 1.7338 32 1 6.0005 6.7388 -0.0225 33 1 5.8902 8.6813 2.2023 34 1 6.2117 7.2888 3.2634 35 1 7.3768 8.6320 3.1801 36 1 10.5592 10.0951 -0.0989 37 1 4.5741 5.5303 -1.1463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601023028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:11 Heat of formation + Delta-G solvation = -33.985537 kcal Electronic energy + Delta-G solvation = -19612.321153 eV Core-core repulsion = 16390.603406 eV Total energy + Delta-G solvation = -3221.717747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38941 -40.12134 -38.96808 -36.62139 -34.99133 -34.28004 -31.95680 -31.28471 -29.87495 -27.31059 -27.22336 -24.73547 -24.14586 -22.18150 -21.61563 -20.96469 -19.51527 -18.45914 -17.60463 -17.32505 -17.06927 -16.56036 -16.45276 -15.91173 -15.78357 -15.37793 -15.07059 -14.81439 -14.49884 -14.23392 -14.20601 -13.75335 -13.25052 -13.02236 -12.99854 -12.76339 -12.70465 -12.42083 -12.33720 -11.98008 -11.83661 -11.19153 -10.83602 -10.78311 -10.72277 -10.61245 -9.94006 -9.54220 -8.35700 -6.41545 0.53366 1.16697 1.21775 1.33030 1.36823 1.47778 2.30563 2.55528 2.61751 2.74131 3.08681 3.54238 3.81705 3.87177 3.90420 4.17974 4.20363 4.32068 4.46010 4.49680 4.51142 4.63527 4.68284 4.73816 4.82731 4.83205 4.88979 5.15973 5.37007 5.44339 5.50443 5.78919 5.81096 6.02692 6.17271 6.48420 6.63716 7.00254 7.24761 7.54129 8.79256 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045445 B = 0.003390 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.982921 B = 8258.380430 C = 8411.666285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.139 3.861 7 C -0.309 4.309 8 C 0.581 3.419 9 O -0.605 6.605 10 N -0.700 5.700 11 C 0.235 3.765 12 H 0.031 0.969 13 C -0.141 4.141 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.032 3.968 17 N -0.931 5.931 18 Si 0.927 3.073 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.254 1.254 22 C 0.089 3.911 23 N -0.315 5.315 24 H 0.105 0.895 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.210 0.790 32 H 0.404 0.596 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 -18.607 0.739 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.020 4.020 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.013 4.013 7 C -0.324 4.324 8 C 0.370 3.630 9 O -0.489 6.489 10 N -0.348 5.348 11 C 0.131 3.869 12 H 0.048 0.952 13 C -0.200 4.200 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.168 4.168 17 N -0.570 5.570 18 Si 0.752 3.248 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.178 1.178 22 C -0.099 4.099 23 N -0.135 5.135 24 H 0.123 0.877 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.227 0.773 32 H 0.239 0.761 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.096 -19.553 0.538 25.979 hybrid contribution 1.028 0.921 0.487 1.464 sum -16.068 -18.633 1.026 24.625 Atomic orbital electron populations 1.22971 0.78721 1.04289 1.00915 1.87752 1.21977 1.26890 1.95678 1.22541 0.92568 0.85291 1.01641 1.21751 0.92554 0.77373 1.07320 1.48494 1.32605 1.12522 1.20105 1.23272 0.90074 0.93727 0.94259 1.20301 1.10726 0.97022 1.04328 1.17730 0.80686 0.81565 0.83029 1.90676 1.52618 1.76777 1.28853 1.46149 1.45026 1.12745 1.30848 1.18882 0.88833 0.87904 0.91233 0.95152 1.22111 1.00379 0.99537 0.97938 1.21205 0.97928 1.22108 1.15046 0.92384 1.25612 0.99270 0.94785 0.97171 1.69981 1.18230 1.28183 1.40559 0.86052 0.79291 0.78499 0.80998 1.20051 1.20344 1.17847 1.24418 0.92598 0.98490 0.94374 1.77099 1.25090 0.97128 1.14185 0.87690 0.93180 0.93330 0.92594 0.92446 0.87665 0.84796 0.77350 0.76092 0.92371 0.94355 0.93334 0.92075 0.77461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.11 10.70 -148.98 -1.59 -7.71 16 3 C 0.06 0.85 6.11 71.98 0.44 1.29 16 4 C 0.13 1.84 6.86 86.38 0.59 2.43 16 5 N -0.36 -7.58 3.65 -346.29 -1.26 -8.85 16 6 C 0.14 3.32 11.25 84.28 0.95 4.27 16 7 C -0.31 -9.31 6.13 -20.15 -0.12 -9.43 16 8 C 0.58 22.67 7.78 86.66 0.67 23.35 16 9 O -0.61 -27.64 16.56 -4.05 -0.07 -27.71 16 10 N -0.70 -28.25 5.06 -449.37 -2.27 -30.52 16 11 C 0.24 11.20 2.22 44.24 0.10 11.30 16 12 H 0.03 1.58 4.72 -2.38 -0.01 1.57 16 13 C -0.14 -6.08 9.47 71.98 0.68 -5.40 16 14 C -0.52 -28.39 9.05 25.60 0.23 -28.16 16 15 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 16 C 0.03 1.80 5.47 84.66 0.46 2.26 16 17 N -0.93 -55.59 13.96 21.45 0.30 -55.29 16 18 Si 0.93 44.75 26.99 68.60 1.85 46.60 16 19 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.25 -11.96 6.82 99.48 0.68 -11.28 16 22 C 0.09 2.32 11.50 85.65 0.99 3.31 16 23 N -0.32 -7.97 12.33 -56.28 -0.69 -8.67 16 24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.13 1.21 8.06 -2.39 -0.02 1.19 16 31 H 0.21 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.40 14.22 7.55 -92.71 -0.70 13.52 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.21 4.43 7.50 -2.91 -0.02 4.41 16 Total: -1.00 -71.41 322.67 2.84 -68.57 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.35 Total: 16.86 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.24 Total: 6.72 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.93 Total: -103.33 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.66 Total: -35.42 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.60 kcal Total: -71.41 2.84 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.584 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds