Wall clock time and date at job start Mon Mar 30 2020 01:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33382 * 125.20265 * 2 1 4 4 C 1.38428 * 114.91982 * 180.02562 * 3 2 1 5 5 C 1.33389 * 114.91956 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.20036 * 179.97438 * 5 4 3 7 7 N 1.46909 * 109.47177 * 89.99992 * 6 5 4 8 8 C 1.46901 * 110.99686 * 293.95467 * 7 6 5 9 9 C 1.46893 * 111.00101 * 169.99860 * 7 6 5 10 10 C 1.53003 * 109.47323 * 200.22997 * 9 7 6 11 11 H 1.08997 * 109.46394 * 305.18665 * 10 9 7 12 12 C 1.52997 * 109.47363 * 185.18854 * 10 9 7 13 13 C 1.53001 * 109.47077 * 65.18302 * 10 9 7 14 14 C 1.50697 * 109.46955 * 185.00088 * 13 10 9 15 15 H 1.07998 * 120.00080 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99787 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99895 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47135 * 59.99715 * 18 16 14 20 20 H 1.48498 * 109.47635 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46983 * 299.99880 * 18 16 14 22 22 S 1.75878 * 109.59488 * 0.24180 * 5 4 3 23 23 H 1.08997 * 109.47905 * 89.99658 * 1 2 3 24 24 H 1.09002 * 109.47455 * 210.00208 * 1 2 3 25 25 H 1.09007 * 109.47030 * 329.99247 * 1 2 3 26 26 H 1.08001 * 122.54163 * 0.02562 * 3 2 1 27 27 H 1.08001 * 122.53691 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.47249 * 330.00125 * 6 5 4 29 29 H 1.08996 * 109.47076 * 209.99710 * 6 5 4 30 30 H 1.09001 * 109.47102 * 302.16616 * 8 7 6 31 31 H 1.09004 * 109.47472 * 62.16965 * 8 7 6 32 32 H 1.08997 * 109.46748 * 182.17225 * 8 7 6 33 33 H 1.08999 * 109.46967 * 80.22688 * 9 7 6 34 34 H 1.09001 * 109.46928 * 320.22932 * 9 7 6 35 35 H 1.08999 * 109.46700 * 294.33573 * 12 10 9 36 36 H 1.08999 * 109.47263 * 174.33617 * 12 10 9 37 37 H 1.09007 * 109.47145 * 54.33364 * 12 10 9 38 38 H 1.09000 * 109.47450 * 305.00717 * 13 10 9 39 39 H 1.09005 * 109.46583 * 65.00269 * 13 10 9 40 40 H 0.97001 * 120.00034 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9750 -0.4478 -0.0016 6 6 5.3860 -0.9772 -0.0029 7 7 5.8455 -1.1500 1.3818 8 6 5.9590 0.1459 2.0643 9 6 7.1183 -1.8819 1.4266 10 6 7.3146 -2.4789 2.8216 11 1 7.2378 -1.6891 3.5687 12 6 8.6963 -3.1301 2.9079 13 6 6.2366 -3.5332 3.0813 14 6 6.3540 -4.0331 4.4981 15 1 7.1205 -3.6380 5.1484 16 6 5.4829 -4.9948 4.9642 17 7 4.5492 -5.4755 4.1724 18 14 5.6278 -5.6140 6.7206 19 1 5.4470 -4.4797 7.6618 20 1 4.5817 -6.6373 6.9727 21 1 6.9697 -6.2167 6.9238 22 16 2.5209 -1.4372 -0.0088 23 1 -0.3635 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 1.8669 2.0894 0.0004 27 1 4.3720 1.6350 -0.0002 28 1 6.0384 -0.2712 -0.5167 29 1 5.4132 -1.9377 -0.5172 30 1 6.6456 0.7881 1.5128 31 1 4.9780 0.6187 2.1118 32 1 6.3376 -0.0077 3.0748 33 1 7.9383 -1.1987 1.2051 34 1 7.1031 -2.6828 0.6874 35 1 8.7384 -3.9838 2.2315 36 1 8.8764 -3.4664 3.9290 37 1 9.4585 -2.4042 2.6246 38 1 5.2518 -3.0903 2.9326 39 1 6.3687 -4.3657 2.3901 40 1 3.9361 -6.1518 4.5004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602460497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:04 Heat of formation + Delta-G solvation = 17.994932 kcal Electronic energy + Delta-G solvation = -18161.549088 eV Core-core repulsion = 15488.378599 eV Total energy + Delta-G solvation = -2673.170490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.46214 -37.13869 -34.42012 -32.28994 -31.55655 -28.50823 -27.10303 -26.55730 -24.86408 -23.09831 -22.53861 -21.36629 -18.89980 -18.53140 -16.68595 -16.27477 -15.38150 -15.15422 -14.84030 -14.35570 -13.90946 -13.80791 -13.32817 -13.08125 -12.69654 -12.44882 -12.37921 -12.02217 -11.89255 -11.65150 -11.61258 -11.25866 -11.13061 -11.07306 -10.81226 -10.75099 -10.43258 -10.31077 -10.12592 -9.59603 -9.02023 -8.82428 -8.35155 -8.21965 -8.18296 -7.78970 -5.83939 -3.84246 1.15252 1.82908 2.25973 2.85467 3.40660 3.45066 3.47324 4.39574 4.57497 4.91106 5.00414 5.26914 5.29726 5.47416 5.49133 5.51357 5.59205 5.64455 5.69627 5.78912 5.87417 5.90932 6.00125 6.10352 6.28254 6.29053 6.31567 6.39577 6.41866 6.55073 6.67900 7.01605 7.06783 7.33831 7.45305 7.56055 7.89208 8.11923 8.26177 8.61997 9.23357 9.77534 11.27173 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.005158 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.570073 B = 5427.429697 C = 6506.702380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.196 4.196 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.159 4.159 6 C 0.124 3.876 7 N -0.524 5.524 8 C 0.027 3.973 9 C 0.064 3.936 10 C -0.083 4.083 11 H 0.056 0.944 12 C -0.131 4.131 13 C 0.036 3.964 14 C -0.513 4.513 15 H 0.051 0.949 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.884 3.116 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.279 1.279 22 S 0.139 5.861 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.008 0.992 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 12.600 -10.849 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.314 4.314 3 C -0.173 4.173 4 C -0.174 4.174 5 C -0.277 4.277 6 C -0.006 4.006 7 N -0.247 5.247 8 C -0.122 4.122 9 C -0.063 4.063 10 C -0.101 4.101 11 H 0.074 0.926 12 C -0.189 4.189 13 C -0.001 4.001 14 C -0.552 4.552 15 H 0.069 0.931 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.713 3.287 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.205 1.205 22 S 0.404 5.596 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.026 0.974 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.580 10.616 -10.618 15.436 hybrid contribution 0.920 1.619 0.693 1.987 sum -2.660 12.235 -9.925 15.978 Atomic orbital electron populations 1.20289 0.88251 1.03039 1.02281 1.24551 0.99943 0.96637 1.10240 1.19931 0.92883 0.98840 1.05664 1.19969 0.96033 0.95708 1.05678 1.24355 0.98771 0.96254 1.08322 1.20544 0.88955 1.00193 0.90869 1.61853 1.30618 1.19058 1.13218 1.22426 1.00803 0.89537 0.99404 1.22306 0.87555 0.96190 1.00242 1.21213 0.96661 0.99140 0.93134 0.92605 1.21696 0.95842 0.99122 1.02261 1.19039 0.93727 0.91826 0.95480 1.21275 1.14738 1.21221 0.97926 0.93122 1.24977 0.95576 0.96834 0.96969 1.69967 1.18542 1.29441 1.35469 0.86789 0.77508 0.78523 0.85909 1.20454 1.21456 1.20469 1.84587 0.95682 1.08048 1.71233 0.91145 0.91292 0.90914 0.85059 0.85088 0.93645 0.89886 0.96597 0.91536 0.90898 0.96060 0.91514 0.93527 0.92053 0.95382 0.94867 0.97411 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.38 36.01 0.37 -0.42 16 2 C -0.20 -2.52 6.51 -36.01 -0.23 -2.76 16 3 C -0.14 -1.77 10.05 -41.21 -0.41 -2.18 16 4 C -0.14 -1.87 8.65 -41.21 -0.36 -2.22 16 5 C -0.16 -2.33 5.43 -36.00 -0.20 -2.53 16 6 C 0.12 1.83 5.44 -4.97 -0.03 1.80 16 7 N -0.52 -9.03 4.06 -244.37 -0.99 -10.02 16 8 C 0.03 0.41 9.04 60.07 0.54 0.95 16 9 C 0.06 1.12 4.39 -3.83 -0.02 1.11 16 10 C -0.08 -1.71 2.40 -90.62 -0.22 -1.93 16 11 H 0.06 1.19 6.72 -51.93 -0.35 0.84 16 12 C -0.13 -2.49 8.91 37.16 0.33 -2.16 16 13 C 0.04 0.95 4.39 -27.88 -0.12 0.83 16 14 C -0.51 -14.68 8.48 -34.44 -0.29 -14.98 16 15 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 18 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 S 0.14 2.10 23.31 -107.50 -2.51 -0.41 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.08 1.23 7.82 -51.93 -0.41 0.82 16 30 H 0.02 0.21 8.12 -51.93 -0.42 -0.21 16 31 H 0.07 1.01 6.43 -51.93 -0.33 0.68 16 32 H 0.07 1.19 6.67 -51.93 -0.35 0.84 16 33 H 0.02 0.33 7.99 -51.93 -0.41 -0.08 16 34 H 0.07 1.16 7.72 -51.93 -0.40 0.76 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.95 7.63 -51.93 -0.40 0.55 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -31.10 335.73 -10.20 -41.29 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -6.75 Total: -3.38 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.73 Total: -22.92 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.26 Total: -36.80 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.51 Total: -0.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.10 -10.20 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602460497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.289 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds