Wall clock time and date at job start Mon Mar 30 2020 00:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47240 * 2 1 4 4 C 1.50700 * 109.47279 * 239.99806 * 2 1 3 5 5 H 1.08003 * 119.99977 * 245.46286 * 4 2 1 6 6 C 1.37873 * 119.99918 * 65.45690 * 4 2 1 7 7 N 1.31512 * 120.00388 * 9.55211 * 6 4 2 8 8 Si 1.86796 * 119.99888 * 189.54528 * 6 4 2 9 9 H 1.48502 * 109.47069 * 84.99920 * 8 6 4 10 10 H 1.48501 * 109.47176 * 204.99742 * 8 6 4 11 11 H 1.48495 * 109.47442 * 324.99850 * 8 6 4 12 12 N 1.46907 * 109.47078 * 119.99661 * 2 1 3 13 13 C 1.46896 * 110.99868 * 274.99885 * 12 2 1 14 14 C 1.52997 * 109.47256 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.47068 * 59.99888 * 14 13 12 16 16 O 1.42908 * 109.47032 * 300.00039 * 14 13 12 17 17 C 1.53004 * 109.47656 * 180.02562 * 14 13 12 18 18 C 1.50693 * 109.47178 * 184.99682 * 17 14 13 19 19 C 1.38246 * 119.97433 * 90.00247 * 18 17 14 20 20 C 1.38191 * 120.02877 * 179.97438 * 19 18 17 21 21 C 1.38454 * 119.97420 * 359.97438 * 20 19 18 22 22 F 1.35103 * 120.02710 * 179.97438 * 21 20 19 23 23 C 1.38464 * 119.95110 * 0.25243 * 21 20 19 24 24 C 1.38203 * 119.97003 * 359.51483 * 23 21 20 25 25 H 1.08997 * 109.47139 * 63.75959 * 1 2 3 26 26 H 1.08997 * 109.46624 * 183.76283 * 1 2 3 27 27 H 1.08998 * 109.46976 * 303.75886 * 1 2 3 28 28 H 0.96996 * 120.00441 * 180.02562 * 7 6 4 29 29 H 1.00899 * 110.99868 * 151.05037 * 12 2 1 30 30 H 1.09000 * 109.47173 * 60.00114 * 13 12 2 31 31 H 1.08995 * 109.47704 * 300.00263 * 13 12 2 32 32 H 0.96695 * 113.99799 * 300.00103 * 16 14 13 33 33 H 1.08997 * 109.46603 * 64.99921 * 17 14 13 34 34 H 1.08996 * 109.46658 * 305.00016 * 17 14 13 35 35 H 1.08007 * 119.98159 * 359.97207 * 19 18 17 36 36 H 1.08007 * 120.01614 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.01727 * 179.72709 * 23 21 20 38 38 H 1.07996 * 119.98708 * 180.23543 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6371 -1.1337 6 6 1.7946 -0.1775 -2.4795 7 7 1.2991 1.0354 -2.5936 8 14 2.1764 -1.1781 -4.0100 9 1 1.0246 -2.0613 -4.3241 10 1 2.4230 -0.2614 -5.1520 11 1 3.3850 -2.0071 -3.7708 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5963 -0.5326 3.5742 15 1 3.5917 -0.9260 3.3683 16 8 1.7099 -1.6127 3.8743 17 6 2.6611 0.4204 4.7695 18 6 3.2815 -0.2897 5.9450 19 6 4.6505 -0.2486 6.1327 20 6 5.2206 -0.8989 7.2106 21 6 4.4200 -1.5914 8.1030 22 9 4.9762 -2.2280 9.1569 23 6 3.0494 -1.6359 7.9115 24 6 2.4811 -0.9807 6.8355 25 1 -0.3633 0.4544 -0.9217 26 1 -0.3632 -1.0254 0.0674 27 1 -0.3633 0.5711 0.8544 28 1 1.1315 1.4102 -3.4724 29 1 2.9174 -1.1204 1.0289 30 1 1.0871 0.6164 2.5525 31 1 2.7588 1.0463 2.1182 32 1 0.8040 -1.3357 4.0683 33 1 1.6537 0.7441 5.0310 34 1 3.2659 1.2890 4.5091 35 1 5.2748 0.2920 5.4366 36 1 6.2902 -0.8670 7.3568 37 1 2.4244 -2.1794 8.6045 38 1 1.4117 -1.0121 6.6879 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:11 Heat of formation + Delta-G solvation = -84.609949 kcal Electronic energy + Delta-G solvation = -19546.343829 eV Core-core repulsion = 16302.510882 eV Total energy + Delta-G solvation = -3243.832947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.02450 -39.52528 -37.51666 -35.28666 -32.73781 -32.31578 -31.28614 -29.70041 -27.70296 -25.34575 -24.44028 -23.20970 -21.77318 -21.11380 -19.78385 -17.81326 -16.84907 -16.59019 -16.03303 -15.74186 -15.60361 -15.18705 -14.84942 -14.28379 -14.03518 -13.83245 -13.65711 -13.39198 -13.25384 -12.57812 -12.21721 -11.92192 -11.78187 -11.63955 -11.49745 -11.11603 -10.91813 -10.76433 -10.57439 -10.49585 -10.24679 -10.09592 -9.60554 -9.25670 -8.90907 -8.58807 -8.44112 -7.24946 -6.07758 -4.09715 0.99289 1.08455 3.30166 3.36234 3.39200 3.42216 4.11611 4.37839 4.47124 4.53191 4.70879 4.75923 4.96369 5.07100 5.14108 5.26464 5.29436 5.48584 5.57052 5.72632 5.74202 5.83350 5.95356 5.96069 6.08513 6.17810 6.31030 6.46369 6.74413 6.78921 7.06317 7.14971 7.37318 7.77446 7.82213 7.95856 8.15913 8.34364 8.67199 9.01590 9.55527 11.01525 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041131 B = 0.003116 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.586486 B = 8984.180868 C = 9191.149978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.029 3.971 14 C 0.117 3.883 15 H 0.093 0.907 16 O -0.544 6.544 17 C -0.116 4.116 18 C -0.077 4.077 19 C -0.091 4.091 20 C -0.153 4.153 21 C 0.086 3.914 22 F -0.145 7.145 23 C -0.153 4.153 24 C -0.076 4.076 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.006 0.994 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.368 0.632 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -0.470 19.296 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H 0.024 0.976 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.101 4.101 14 C 0.057 3.943 15 H 0.111 0.889 16 O -0.348 6.348 17 C -0.154 4.154 18 C -0.077 4.077 19 C -0.109 4.109 20 C -0.172 4.172 21 C 0.067 3.933 22 F -0.123 7.123 23 C -0.171 4.171 24 C -0.094 4.094 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.214 0.786 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.577 -0.950 19.247 19.600 hybrid contribution 0.564 0.372 -0.867 1.100 sum 4.141 -0.578 18.380 18.850 Atomic orbital electron populations 1.21641 0.98344 0.98819 0.98821 1.19121 0.92129 0.92779 0.85802 0.97584 1.21234 1.35929 1.08197 0.90616 0.92141 1.24920 0.95214 0.94619 0.99078 1.69967 1.45002 1.14004 1.23848 0.86587 0.78811 0.80049 0.82410 1.20468 1.21400 1.19930 1.60618 1.32326 1.32547 1.05557 1.22612 1.00174 0.94644 0.92688 1.21918 0.94437 0.87024 0.90906 0.88917 1.86604 1.22790 1.33501 1.91895 1.21404 1.01774 0.98646 0.93576 1.19869 0.93469 0.98202 0.96186 1.20946 0.94539 0.98662 0.96778 1.21101 1.00355 0.99985 0.95719 1.17721 0.91864 0.97086 0.86642 1.91483 1.85882 1.80031 1.54945 1.21131 0.93116 1.02573 1.00310 1.20892 1.00283 0.95394 0.92830 0.91930 0.94601 0.97472 0.92902 0.85094 0.91646 0.95592 0.78593 0.90327 0.89833 0.85039 0.84952 0.84951 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.27 37.16 0.34 -2.51 16 2 C 0.21 5.22 2.47 -68.86 -0.17 5.05 16 3 H 0.01 0.18 7.74 -51.93 -0.40 -0.22 16 4 C -0.52 -14.29 8.48 -34.44 -0.29 -14.59 16 5 H 0.06 1.65 7.69 -52.48 -0.40 1.25 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.67 16 7 N -0.89 -25.49 12.16 55.43 0.67 -24.82 16 8 Si 0.89 21.28 29.55 -169.99 -5.02 16.26 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.68 -14.14 6.17 -107.95 -0.67 -14.81 16 13 C 0.03 0.48 5.15 -3.83 -0.02 0.46 16 14 C 0.12 1.54 3.16 -26.73 -0.08 1.45 16 15 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 16 O -0.54 -7.68 12.70 -35.23 -0.45 -8.13 16 17 C -0.12 -1.17 5.03 -27.88 -0.14 -1.31 16 18 C -0.08 -0.80 4.97 -104.62 -0.52 -1.32 16 19 C -0.09 -0.91 9.70 -39.60 -0.38 -1.30 16 20 C -0.15 -1.55 10.03 -39.52 -0.40 -1.95 16 21 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 22 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 23 C -0.15 -1.55 10.03 -39.51 -0.40 -1.95 16 24 C -0.08 -0.76 9.40 -39.59 -0.37 -1.13 16 25 H 0.06 1.64 6.83 -51.93 -0.35 1.29 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.01 0.14 7.55 -51.93 -0.39 -0.25 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 6.94 8.26 -39.29 -0.32 6.62 16 30 H 0.07 1.06 7.51 -51.93 -0.39 0.67 16 31 H 0.03 0.43 8.05 -51.93 -0.42 0.02 16 32 H 0.37 4.11 9.04 45.56 0.41 4.52 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -30.21 324.97 -8.12 -38.33 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.78 Total: 6.66 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.81 Total: -16.74 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.01 Total: -39.63 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.45 Total: -8.13 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.21 -8.12 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.284 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds