Wall clock time and date at job start Mon Mar 30 2020 01:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00303 * 2 1 4 4 H 1.48498 * 109.47513 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46930 * 300.00312 * 3 2 1 6 6 H 1.48503 * 109.47084 * 59.99794 * 3 2 1 7 7 C 1.37876 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47277 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99433 * 180.02562 * 11 10 9 13 13 O 1.21579 * 120.00364 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99446 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99872 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47050 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46942 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47084 * 179.97438 * 17 16 15 19 19 C 1.34429 * 126.81895 * 124.99739 * 18 17 16 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 H 0.97003 * 119.99920 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47370 * 60.00046 * 9 7 2 25 25 H 1.09002 * 109.47419 * 299.99666 * 9 7 2 26 26 H 1.09003 * 109.47121 * 59.99880 * 10 9 7 27 27 H 1.08994 * 109.46735 * 299.99909 * 10 9 7 28 28 H 0.96990 * 119.99977 * 359.97438 * 11 10 9 29 29 H 0.97005 * 120.00338 * 0.02562 * 14 12 11 30 30 H 1.09007 * 109.46587 * 60.00945 * 15 14 12 31 31 H 1.08996 * 109.47100 * 300.00336 * 15 14 12 32 32 H 1.09002 * 109.47043 * 60.00178 * 16 15 14 33 33 H 1.08996 * 109.47276 * 300.00023 * 16 15 14 34 34 H 1.09002 * 109.47279 * 60.00111 * 17 16 15 35 35 H 1.08995 * 109.47424 * 300.00289 * 17 16 15 36 36 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5126 -4.9308 -0.0024 12 6 2.1866 -6.0980 -0.0031 13 8 3.4024 -6.0981 -0.0036 14 7 1.5126 -7.2652 -0.0031 15 6 2.2451 -8.5340 -0.0044 16 6 1.2508 -9.6969 -0.0048 17 6 2.0158 -11.0219 -0.0055 18 7 1.0638 -12.1354 -0.0053 19 6 1.0089 -13.1486 -0.8870 20 7 0.0203 -13.9334 -0.5427 21 6 -0.5761 -13.4564 0.5491 22 7 0.0237 -12.3535 0.9129 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6048 0.8877 27 1 2.8711 -3.6039 -0.8922 28 1 0.5427 -4.9308 -0.0016 29 1 0.5426 -7.2652 -0.0031 30 1 2.8724 -8.5922 0.8852 31 1 2.8711 -8.5912 -0.8948 32 1 0.6238 -9.6384 -0.8945 33 1 0.6245 -9.6398 0.8854 34 1 2.6425 -11.0801 0.8844 35 1 2.6424 -11.0793 -0.8954 36 1 1.6657 -13.2897 -1.7327 37 1 -1.4215 -13.9055 1.0493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612105984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:53 Heat of formation + Delta-G solvation = 21.058704 kcal Electronic energy + Delta-G solvation = -18726.550840 eV Core-core repulsion = 15539.512742 eV Total energy + Delta-G solvation = -3187.038098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.94691 -40.98242 -37.45786 -36.46794 -35.13872 -34.76877 -32.28068 -32.10146 -30.98932 -27.39070 -26.21263 -23.65992 -22.93409 -22.77301 -22.23379 -21.81993 -19.36071 -18.44358 -18.30306 -17.17733 -17.05257 -16.65290 -16.48501 -16.00958 -15.80230 -15.20230 -15.17258 -15.02938 -14.80132 -14.27601 -13.78502 -13.73638 -13.20139 -12.96662 -12.79303 -12.73875 -12.50665 -12.24961 -11.98217 -11.68026 -11.50167 -11.22378 -10.97766 -10.78059 -10.61289 -10.61117 -10.34451 -9.71517 -8.24233 -6.34329 0.72312 1.39197 1.41393 1.42597 1.55584 1.81868 2.04157 2.16747 2.41514 3.10725 3.32215 3.56832 3.57277 3.83741 3.95335 4.12268 4.22075 4.41285 4.47998 4.51229 4.53795 4.67295 4.87300 4.99169 5.08510 5.31658 5.32252 5.47600 5.50432 5.52978 5.59718 5.79180 5.95209 6.03717 6.17342 6.79403 7.11476 7.15219 7.35111 7.59413 8.87894 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.060335 B = 0.002261 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.962865 B =12383.323214 C =12708.649648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.735 5.735 12 C 0.697 3.303 13 O -0.639 6.639 14 N -0.736 5.736 15 C 0.143 3.857 16 C -0.126 4.126 17 C 0.130 3.870 18 N -0.382 5.382 19 C 0.260 3.740 20 N -0.583 5.583 21 C 0.189 3.811 22 N -0.353 5.353 23 H 0.265 0.735 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.406 0.594 29 H 0.410 0.590 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.261 0.739 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -25.768 -1.898 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.390 5.390 12 C 0.397 3.603 13 O -0.521 6.521 14 N -0.393 5.393 15 C 0.019 3.981 16 C -0.165 4.165 17 C 0.009 3.991 18 N -0.172 5.172 19 C -0.036 4.036 20 N -0.311 5.311 21 C -0.114 4.114 22 N -0.181 5.181 23 H 0.074 0.926 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.242 0.758 29 H 0.245 0.755 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.161 0.839 36 H 0.276 0.724 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.464 -25.457 -1.442 25.540 hybrid contribution -0.624 1.117 0.029 1.279 sum 0.840 -24.340 -1.413 24.396 Atomic orbital electron populations 1.70068 1.07544 1.27919 1.51163 1.25891 0.95822 1.03163 0.94484 0.85378 0.78999 0.78703 0.77848 1.18881 1.20248 1.20291 1.21503 0.93647 0.91876 1.51282 0.92205 1.19137 0.94268 0.91743 0.96323 1.21071 0.94584 0.81099 0.99664 1.45240 1.10402 1.04556 1.78764 1.16148 0.85145 0.81260 0.77737 1.90860 1.13626 1.87348 1.60238 1.44950 1.10336 1.03909 1.80095 1.21091 0.94062 0.80307 1.02654 1.21838 0.98333 0.92173 1.04122 1.21949 0.88563 0.81475 1.07127 1.50698 1.24563 1.21431 1.20546 1.26948 0.96310 0.84324 0.95976 1.70568 1.11529 1.32391 1.16618 1.26513 1.00609 0.91107 0.93131 1.77998 1.03370 1.20724 1.16041 0.92570 0.97302 0.97383 0.93826 0.93697 0.75839 0.75451 0.91914 0.90901 0.90200 0.90943 0.88330 0.83891 0.72375 0.74870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.16 6.91 5.61 86.38 0.48 7.40 16 11 N -0.74 -25.36 5.56 -478.52 -2.66 -28.02 16 12 C 0.70 23.15 8.57 179.05 1.53 24.69 16 13 O -0.64 -26.54 16.34 -3.96 -0.06 -26.61 16 14 N -0.74 -16.16 5.56 -478.53 -2.66 -18.82 16 15 C 0.14 2.33 5.67 86.38 0.49 2.82 16 16 C -0.13 -1.36 5.54 30.59 0.17 -1.19 16 17 C 0.13 0.95 6.55 86.38 0.57 1.52 16 18 N -0.38 -4.90 3.69 -352.06 -1.30 -6.20 16 19 C 0.26 2.84 12.63 180.36 2.28 5.11 16 20 N -0.58 -9.94 11.19 -203.99 -2.28 -12.23 16 21 C 0.19 3.15 13.03 180.76 2.36 5.51 16 22 N -0.35 -6.58 12.56 -61.24 -0.77 -7.35 16 23 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.41 11.88 8.49 -92.72 -0.79 11.09 16 29 H 0.41 6.84 8.49 -92.70 -0.79 6.05 16 30 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.14 0.04 8.09 -2.39 -0.02 0.02 16 36 H 0.26 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.24 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -78.23 326.81 0.81 -77.42 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -0.49 Total: 12.50 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 8.72 Total: 17.74 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -9.39 Total: -126.63 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -78.23 0.81 -77.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612105984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.479 kcal (2) G-P(sol) polarization free energy of solvation -78.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds