Wall clock time and date at job start Mon Mar 30 2020 00:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 C 1.50694 * 109.47243 * 120.00373 * 2 1 3 5 5 H 1.08005 * 120.00506 * 119.99860 * 4 2 1 6 6 C 1.37875 * 120.00316 * 300.00416 * 4 2 1 7 7 N 1.31519 * 119.99563 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00348 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47530 * 89.99601 * 8 6 4 10 10 H 1.48500 * 109.46673 * 209.99530 * 8 6 4 11 11 H 1.48497 * 109.46967 * 329.99092 * 8 6 4 12 12 N 1.46501 * 109.46688 * 240.00522 * 2 1 3 13 13 C 1.34771 * 120.00115 * 85.00252 * 12 2 1 14 14 O 1.21558 * 120.00189 * 359.97438 * 13 12 2 15 15 C 1.47595 * 120.00130 * 179.97438 * 13 12 2 16 16 N 1.29221 * 125.85976 * 0.02562 * 15 13 12 17 17 O 1.41809 * 112.89450 * 180.22226 * 16 15 13 18 18 C 1.42478 * 107.22268 * 344.10493 * 17 16 15 19 19 C 1.53066 * 112.68332 * 144.71494 * 18 17 16 20 20 C 1.54347 * 104.72347 * 101.96460 * 19 18 17 21 21 N 1.48024 * 107.02295 * 357.86212 * 20 19 18 22 22 C 1.48826 * 106.04129 * 24.89780 * 21 20 19 23 23 C 1.52033 * 125.86210 * 180.02562 * 15 13 12 24 24 H 1.08998 * 109.47663 * 60.00164 * 1 2 3 25 25 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47227 * 299.99266 * 1 2 3 27 27 H 0.97003 * 119.99864 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99621 * 264.99110 * 12 2 1 29 29 H 1.08993 * 110.38703 * 343.15635 * 19 18 17 30 30 H 1.08993 * 110.38750 * 220.77497 * 19 18 17 31 31 H 1.09003 * 109.91766 * 117.20526 * 20 19 18 32 32 H 1.08994 * 109.91883 * 238.51643 * 20 19 18 33 33 H 1.00896 * 111.00231 * 264.24454 * 21 20 19 34 34 H 1.08998 * 110.69127 * 80.87584 * 22 21 20 35 35 H 1.09002 * 110.68898 * 203.90006 * 22 21 20 36 36 H 1.08996 * 110.86808 * 75.89519 * 23 15 13 37 37 H 1.09000 * 110.86506 * 312.21913 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2396 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.6305 -0.5444 4.4118 10 1 1.3444 -0.9493 5.1121 11 1 2.4880 -2.5656 3.7120 12 7 2.0182 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3571 14 8 1.8575 1.1613 -2.4118 15 6 2.6394 -0.7136 -3.5622 16 7 2.9777 -1.9588 -3.6324 17 8 3.4174 -2.3389 -4.9259 18 6 2.9979 -1.3209 -5.8302 19 6 4.0055 -1.0805 -6.9571 20 6 3.4050 -1.8039 -8.1811 21 7 2.1548 -2.4551 -7.7294 22 6 1.6901 -1.6781 -6.5482 23 6 2.8356 -0.0881 -4.9339 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7094 1.1615 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 4.9734 -1.5103 -6.6991 30 1 4.1040 -0.0137 -7.1572 31 1 3.1848 -1.0823 -8.9678 32 1 4.1039 -2.5557 -8.5479 33 1 2.3175 -3.4206 -7.4860 34 1 1.1648 -0.7764 -6.8627 35 1 1.0527 -2.2909 -5.9107 36 1 3.7343 0.5282 -4.9547 37 1 1.9594 0.4910 -5.2254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687598213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:27 Heat of formation + Delta-G solvation = -10.559563 kcal Electronic energy + Delta-G solvation = -20352.036410 eV Core-core repulsion = 17131.334490 eV Total energy + Delta-G solvation = -3220.701920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14020 -38.99700 -37.30496 -35.01641 -33.24286 -32.39626 -31.20608 -29.59055 -28.98405 -25.94100 -25.35127 -24.00198 -22.23470 -20.96015 -20.60517 -19.34249 -17.60489 -16.91738 -16.21819 -16.08613 -15.41547 -15.27272 -15.04666 -14.56570 -14.39911 -14.03862 -13.80129 -13.24210 -12.98946 -12.52207 -12.38208 -12.16616 -11.93724 -11.79534 -11.64845 -11.27830 -11.16361 -11.03520 -10.87344 -10.84837 -10.40291 -10.30429 -9.88496 -9.61699 -9.15881 -8.89644 -8.64099 -8.14789 -6.19250 -4.28940 1.11190 2.75188 3.22489 3.29035 3.31255 3.46591 3.48811 3.79368 4.08069 4.14792 4.28966 4.38943 4.53183 4.77464 4.82200 4.99671 5.13800 5.19308 5.25863 5.42667 5.46290 5.55384 5.58531 5.62481 5.77252 6.29355 6.70801 6.82604 6.96346 7.00361 7.02808 7.20942 7.41932 7.60640 7.78672 8.03391 8.41321 8.59687 8.83443 9.38278 10.86855 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042784 B = 0.003848 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.291707 B = 7274.095546 C = 7521.347122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.679 5.679 13 C 0.569 3.431 14 O -0.531 6.531 15 C 0.066 3.934 16 N -0.251 5.251 17 O -0.181 6.181 18 C 0.029 3.971 19 C -0.141 4.141 20 C 0.043 3.957 21 N -0.671 5.671 22 C 0.037 3.963 23 C -0.118 4.118 24 H 0.016 0.984 25 H 0.029 0.971 26 H 0.094 0.906 27 H 0.266 0.734 28 H 0.399 0.601 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.343 0.657 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -3.950 -17.523 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.327 5.327 13 C 0.349 3.651 14 O -0.407 6.407 15 C -0.130 4.130 16 N 0.003 4.997 17 O -0.200 6.200 18 C -0.013 4.013 19 C -0.181 4.181 20 C -0.086 4.086 21 N -0.297 5.297 22 C -0.093 4.093 23 C -0.158 4.158 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.183 -3.803 -17.408 18.100 hybrid contribution 1.054 -0.433 1.080 1.570 sum 4.237 -4.235 -16.328 17.392 Atomic orbital electron populations 1.22099 0.97870 0.99514 1.01227 1.18950 0.91431 0.94125 0.79393 0.92797 1.21188 1.32793 1.13484 0.90079 0.91815 1.24876 0.94657 0.94938 0.99094 1.69895 1.35666 1.22376 1.24086 0.86397 0.78615 0.79919 0.81918 1.20479 1.20992 1.19726 1.46624 1.62197 1.14199 1.09710 1.16986 0.80033 0.86353 0.81697 1.90808 1.51169 1.14577 1.84110 1.26652 0.96008 0.92313 0.98042 1.78681 1.07374 1.13891 0.99730 1.91061 1.75508 1.42048 1.11354 1.23589 0.97203 0.88103 0.92424 1.22709 0.98931 1.02761 0.93654 1.22835 0.90491 0.98550 0.96764 1.62758 1.28384 1.06415 1.32141 1.23362 0.94887 1.00098 0.90935 1.22670 1.06071 0.98946 0.88105 0.96451 0.95151 0.88730 0.92433 0.76766 0.89623 0.89121 0.90050 0.91047 0.84118 0.88426 0.89717 0.87291 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.53 2.56 -69.09 -0.18 6.36 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 5 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.34 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 12 N -0.68 -14.32 5.07 -55.97 -0.28 -14.61 16 13 C 0.57 11.26 7.78 -12.45 -0.10 11.16 16 14 O -0.53 -11.94 16.62 5.31 0.09 -11.86 16 15 C 0.07 1.05 7.31 -79.21 -0.58 0.47 16 16 N -0.25 -4.03 12.18 35.39 0.43 -3.60 16 17 O -0.18 -2.59 12.02 -11.57 -0.14 -2.73 16 18 C 0.03 0.33 1.20 -90.23 -0.11 0.22 16 19 C -0.14 -1.20 6.27 -25.99 -0.16 -1.36 16 20 C 0.04 0.34 7.55 -2.50 -0.02 0.32 16 21 N -0.67 -6.34 7.52 -110.43 -0.83 -7.17 16 22 C 0.04 0.38 6.77 -2.54 -0.02 0.37 16 23 C -0.12 -1.43 5.95 -27.08 -0.16 -1.59 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.40 7.77 8.22 -40.82 -0.34 7.43 16 29 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.09 0.64 7.83 -51.93 -0.41 0.23 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.34 3.11 8.92 -39.29 -0.35 2.76 16 34 H 0.10 0.91 7.81 -51.93 -0.41 0.51 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 37 H 0.11 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -29.22 311.08 -6.90 -36.12 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.09 Total: 7.44 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.37 Total: 0.00 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.06 Total: -49.09 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.05 Total: -14.59 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.22 -6.90 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687598213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.561 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds