Wall clock time and date at job start Mon Mar 30 2020 00:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47020 * 2 1 4 4 C 1.50697 * 109.47588 * 119.99944 * 2 1 3 5 5 H 1.07998 * 119.99871 * 119.99622 * 4 2 1 6 6 C 1.37877 * 120.00044 * 300.00375 * 4 2 1 7 7 N 1.31515 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47316 * 59.99865 * 8 6 4 10 10 H 1.48500 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47282 * 299.99747 * 8 6 4 12 12 N 1.46500 * 109.47289 * 240.00317 * 2 1 3 13 13 C 1.34780 * 120.00313 * 84.99360 * 12 2 1 14 14 O 1.21558 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.47595 * 120.00150 * 180.02562 * 13 12 2 16 16 N 1.29179 * 125.86264 * 0.02562 * 15 13 12 17 17 O 1.41744 * 112.89562 * 179.74838 * 16 15 13 18 18 C 1.43309 * 107.32057 * 16.20998 * 17 16 15 19 19 C 1.53000 * 112.38183 * 215.90885 * 18 17 16 20 20 C 1.54706 * 104.57981 * 236.48952 * 19 18 17 21 21 N 1.48678 * 104.63737 * 23.66127 * 20 19 18 22 22 C 1.48854 * 104.42503 * 321.29124 * 21 20 19 23 23 C 1.51969 * 125.86219 * 179.97438 * 15 13 12 24 24 H 1.09004 * 109.46773 * 299.99758 * 1 2 3 25 25 H 1.08997 * 109.47196 * 60.00155 * 1 2 3 26 26 H 1.08996 * 109.47101 * 179.97438 * 1 2 3 27 27 H 0.96992 * 120.00231 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99838 * 264.99872 * 12 2 1 29 29 H 1.08998 * 110.40993 * 355.26212 * 19 18 17 30 30 H 1.09000 * 110.41678 * 117.71016 * 19 18 17 31 31 H 1.08997 * 110.40736 * 142.45457 * 20 19 18 32 32 H 1.08998 * 110.40228 * 264.87783 * 20 19 18 33 33 H 1.00898 * 110.99774 * 201.60688 * 21 20 19 34 34 H 1.08996 * 110.46561 * 279.59349 * 22 21 20 35 35 H 1.09004 * 110.46428 * 157.00618 * 22 21 20 36 36 H 1.09002 * 110.85726 * 283.90582 * 23 15 13 37 37 H 1.09005 * 110.85217 * 47.34143 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0080 10 1 1.8272 -0.4199 5.2204 11 1 1.8261 -2.5202 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1613 -2.4116 15 6 2.6385 -0.7141 -3.5625 16 7 2.9760 -1.9590 -3.6328 17 8 3.4046 -2.3418 -4.9285 18 6 3.6879 -1.1403 -5.6565 19 6 3.3101 -1.2521 -7.1349 20 6 4.6185 -0.9335 -7.8964 21 7 5.7025 -1.2461 -6.9280 22 6 5.1752 -0.7777 -5.6172 23 6 2.8334 -0.0892 -4.9340 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 2.2491 -1.6317 -1.1527 29 1 2.9723 -2.2624 -7.3656 30 1 2.5375 -0.5253 -7.3859 31 1 4.7062 -1.5636 -8.7815 32 1 4.6496 0.1200 -8.1743 33 1 6.5539 -0.7615 -7.1695 34 1 5.3022 0.3004 -5.5186 35 1 5.6728 -1.2975 -4.7985 36 1 1.8765 0.0466 -5.4381 37 1 3.3672 0.8580 -4.8565 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687598217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:32 Heat of formation + Delta-G solvation = -31.523624 kcal Electronic energy + Delta-G solvation = -20328.953533 eV Core-core repulsion = 17107.342543 eV Total energy + Delta-G solvation = -3221.610990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10516 -40.53643 -38.20719 -36.87957 -34.67932 -34.02842 -32.23405 -30.91615 -30.23878 -27.38089 -26.90998 -25.52445 -22.92405 -22.50096 -21.73402 -20.93013 -18.95576 -17.99732 -17.63824 -17.31341 -17.04908 -16.68624 -16.27138 -15.95651 -15.62785 -15.21665 -14.88450 -14.46402 -14.13887 -13.87838 -13.75374 -13.61541 -13.11813 -13.03820 -12.94625 -12.79720 -12.73975 -12.57695 -12.31154 -12.18373 -12.04884 -11.90832 -11.29061 -11.16418 -10.76111 -10.63098 -9.96845 -9.62679 -8.20760 -6.38263 -0.17944 1.45027 1.46835 1.53713 1.58742 1.95301 2.16713 2.43142 2.99964 3.07858 3.10016 3.30199 3.36427 3.59659 3.64428 4.11963 4.21738 4.33613 4.40548 4.49326 4.57833 4.69411 4.72443 4.78518 4.87998 4.92379 5.01706 5.04242 5.30819 5.45303 5.55385 5.60907 5.77756 5.99887 6.03220 6.31787 6.62982 6.69376 7.08303 7.34459 8.85355 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038458 B = 0.003917 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.885555 B = 7146.504076 C = 7466.111529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.014 0.986 4 C -0.554 4.554 5 H 0.069 0.931 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.266 1.266 12 N -0.682 5.682 13 C 0.573 3.427 14 O -0.561 6.561 15 C 0.056 3.944 16 N -0.263 5.263 17 O -0.181 6.181 18 C 0.059 3.941 19 C -0.113 4.113 20 C 0.038 3.962 21 N -0.675 5.675 22 C 0.027 3.973 23 C -0.117 4.117 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.039 0.961 27 H 0.268 0.732 28 H 0.407 0.593 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.352 0.648 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -2.401 -19.272 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.032 0.968 4 C -0.592 4.592 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.331 5.331 13 C 0.356 3.644 14 O -0.438 6.438 15 C -0.139 4.139 16 N -0.007 5.007 17 O -0.203 6.203 18 C 0.018 3.982 19 C -0.152 4.152 20 C -0.090 4.090 21 N -0.306 5.306 22 C -0.103 4.103 23 C -0.157 4.157 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.242 0.758 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.737 -3.294 -18.591 19.733 hybrid contribution 0.297 1.003 0.613 1.213 sum 6.033 -2.291 -17.978 19.101 Atomic orbital electron populations 1.21929 0.97548 0.99739 1.00295 1.18574 0.91646 0.92347 0.80809 0.96776 1.21465 1.33138 1.13799 0.90833 0.91250 1.25719 0.94700 0.95524 1.02052 1.70008 1.36549 1.23587 1.24915 0.85411 0.78665 0.78693 0.77678 1.19659 1.20792 1.19127 1.46397 1.62740 1.14485 1.09446 1.17303 0.78896 0.85991 0.82213 1.90779 1.52270 1.15944 1.84846 1.26134 0.96530 0.93728 0.97463 1.78580 1.06839 1.14340 1.00908 1.91227 1.83343 1.27531 1.18189 1.23210 0.95521 0.83911 0.95517 1.22420 0.99382 1.04804 0.88585 1.23087 0.89129 1.01017 0.95815 1.63705 1.06551 1.58927 1.01377 1.23155 0.92821 0.99770 0.94522 1.22973 1.03608 1.01341 0.87772 0.90810 0.96114 0.94215 0.92280 0.75794 0.89575 0.87239 0.88337 0.91531 0.83062 0.90678 0.90971 0.85286 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.79 2.56 44.24 0.11 13.90 16 3 H 0.01 0.84 7.58 -2.38 -0.02 0.82 16 4 C -0.55 -29.43 8.73 25.60 0.22 -29.21 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.21 11.32 21.45 0.24 -50.97 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.89 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 N -0.68 -29.39 5.07 -449.24 -2.28 -31.67 16 13 C 0.57 23.04 7.79 86.71 0.68 23.72 16 14 O -0.56 -25.67 16.62 -3.90 -0.06 -25.73 16 15 C 0.06 1.79 7.30 45.83 0.33 2.13 16 16 N -0.26 -8.57 12.17 -42.00 -0.51 -9.08 16 17 O -0.18 -5.37 11.96 -39.11 -0.47 -5.84 16 18 C 0.06 1.28 1.31 -10.57 -0.01 1.27 16 19 C -0.11 -1.71 6.50 31.18 0.20 -1.51 16 20 C 0.04 0.46 7.50 86.54 0.65 1.11 16 21 N -0.67 -11.14 7.63 -501.49 -3.83 -14.97 16 22 C 0.03 0.54 6.86 85.97 0.59 1.13 16 23 C -0.12 -2.67 5.96 30.43 0.18 -2.49 16 24 H 0.07 3.98 6.07 -2.38 -0.01 3.96 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.41 16.13 8.22 -92.71 -0.76 15.37 16 29 H 0.09 1.43 8.04 -2.39 -0.02 1.41 16 30 H 0.11 1.15 7.45 -2.39 -0.02 1.14 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.35 4.26 8.93 -89.70 -0.80 3.46 16 34 H 0.08 1.23 7.51 -2.39 -0.02 1.21 16 35 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 36 H 0.13 2.45 7.59 -2.39 -0.02 2.43 16 37 H 0.12 2.51 7.49 -2.38 -0.02 2.49 16 Total: -1.00 -64.72 310.25 -1.26 -65.99 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.46 Total: 22.88 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 4.07 Total: 5.51 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -6.37 Total: -106.69 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.53 Total: -31.57 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -64.72 -1.26 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687598217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.462 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds