Wall clock time and date at job start Mon Mar 30 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37020 * 125.65253 * 2 1 4 4 C 1.35141 * 107.87847 * 180.14660 * 3 2 1 5 5 C 1.46656 * 126.37821 * 179.87633 * 4 3 2 6 6 O 1.21704 * 120.00006 * 179.68861 * 5 4 3 7 7 N 1.34777 * 119.99952 * 359.69426 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46861 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37884 * 120.00200 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99569 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00031 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47198 * 59.99782 * 15 13 11 17 17 H 1.48506 * 109.46650 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47066 * 299.99491 * 15 13 11 19 19 N 1.39839 * 107.24558 * 359.61653 * 4 3 2 20 20 C 1.46499 * 126.18355 * 180.23960 * 19 4 3 21 21 C 1.34626 * 125.65408 * 179.71428 * 2 1 3 22 22 O 1.21725 * 125.72726 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.47615 * 270.27991 * 1 2 3 24 24 H 1.09001 * 109.47348 * 30.28630 * 1 2 3 25 25 H 1.09005 * 109.46829 * 150.28209 * 1 2 3 26 26 H 1.08006 * 126.06071 * 0.02562 * 3 2 1 27 27 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 28 28 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 29 29 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 30 30 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 31 31 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 32 32 H 1.08992 * 109.47534 * 299.99582 * 10 9 8 33 33 H 1.08996 * 109.47134 * 60.00388 * 10 9 8 34 34 H 0.97002 * 119.99797 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47123 * 89.99975 * 20 19 4 36 36 H 1.09004 * 109.46845 * 210.00169 * 20 19 4 37 37 H 1.09007 * 109.47340 * 329.99766 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0033 5 6 4.7392 1.5597 -0.0070 6 8 5.8497 1.0618 -0.0041 7 7 4.6019 2.9004 -0.0136 8 6 5.7894 3.7584 -0.0179 9 6 5.3580 5.2263 -0.0258 10 6 6.5982 6.1223 -0.0297 11 6 6.1732 7.5681 -0.0380 12 1 5.1236 7.8225 -0.0408 13 6 7.1245 8.5663 -0.0432 14 7 8.4026 8.2565 -0.0404 15 14 6.5977 10.3584 -0.0529 16 1 5.7863 10.6424 1.1579 17 1 7.8015 11.2281 -0.0568 18 1 5.7868 10.6295 -1.2671 19 7 3.5376 -0.6975 0.0036 20 6 4.7120 -1.5732 0.0080 21 6 2.2496 -1.0939 0.0055 22 8 1.8610 -2.2474 0.0116 23 1 -0.3634 0.0050 1.0277 24 1 -0.3634 0.8874 -0.5183 25 1 -0.3633 -0.8926 -0.5095 26 1 1.9247 2.1389 0.0004 27 1 3.7168 3.2973 -0.0163 28 1 6.3849 3.5591 0.8731 29 1 6.3848 3.5503 -0.9069 30 1 4.7628 5.4253 -0.9170 31 1 4.7623 5.4347 0.8629 32 1 7.1930 5.9233 0.8617 33 1 7.1941 5.9140 -0.9182 34 1 9.0718 8.9587 -0.0437 35 1 5.0032 -1.7853 1.0367 36 1 4.4712 -2.5064 -0.5013 37 1 5.5354 -1.0795 -0.5083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710466759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:17 Heat of formation + Delta-G solvation = -28.813897 kcal Electronic energy + Delta-G solvation = -19596.923239 eV Core-core repulsion = 16375.429752 eV Total energy + Delta-G solvation = -3221.493487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.65883 -39.41891 -36.99225 -35.89962 -35.24298 -33.45732 -31.67023 -30.52410 -28.46570 -26.63522 -26.24791 -23.86508 -22.68373 -20.89768 -20.84951 -20.11772 -18.09161 -17.02108 -16.72474 -16.47045 -15.84319 -15.40556 -15.35598 -15.05109 -14.53353 -14.38064 -14.29680 -13.87148 -13.62907 -13.12151 -12.91738 -12.42444 -12.31356 -11.93857 -11.90820 -11.64157 -10.92518 -10.84996 -10.75135 -10.66907 -10.19696 -10.05670 -9.93436 -9.48170 -9.18781 -8.97411 -8.41064 -8.03174 -6.05829 -4.09303 1.14212 1.91449 2.60542 2.75395 3.18338 3.29060 3.34384 3.35625 3.50479 4.34379 4.40757 4.66025 4.76699 4.83113 4.89694 5.03254 5.18020 5.29491 5.30063 5.56017 5.61062 5.68696 5.74803 6.06261 6.07253 6.30933 6.39771 6.51240 6.71837 6.92002 6.95400 7.51120 7.58251 7.70404 7.92292 7.97777 8.16706 8.33128 8.97161 9.55152 11.05380 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037617 B = 0.003083 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.162994 B = 9081.325244 C = 9789.133623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.525 5.525 3 C 0.050 3.950 4 C -0.029 4.029 5 C 0.585 3.415 6 O -0.538 6.538 7 N -0.712 5.712 8 C 0.118 3.882 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.525 4.525 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.510 5.510 20 C 0.100 3.900 21 C 0.647 3.353 22 O -0.569 6.569 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.192 0.808 27 H 0.399 0.601 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 -14.333 -0.105 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.242 5.242 3 C -0.080 4.080 4 C -0.138 4.138 5 C 0.371 3.629 6 O -0.416 6.416 7 N -0.363 5.363 8 C -0.004 4.004 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.230 5.230 20 C -0.041 4.041 21 C 0.350 3.650 22 O -0.447 6.447 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.209 0.791 27 H 0.233 0.767 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.955 -15.512 -0.101 20.865 hybrid contribution -0.665 1.348 0.036 1.504 sum -14.620 -14.164 -0.064 20.356 Atomic orbital electron populations 1.21860 0.74564 1.04669 1.03531 1.44935 1.07971 1.06075 1.65185 1.22080 0.87874 0.93485 1.04568 1.19837 0.94163 0.84154 1.15679 1.16745 0.86684 0.82161 0.77351 1.90819 1.25975 1.74247 1.50538 1.45919 1.11315 1.04809 1.74210 1.21741 0.85973 0.90214 1.02444 1.21909 1.01786 0.91222 1.01022 1.19021 0.91422 0.93186 0.97732 1.21157 0.92762 0.91123 1.51242 0.92667 1.25029 0.94942 0.99227 0.95219 1.69952 0.99855 1.33086 1.50332 0.86640 0.77947 0.84709 0.78588 1.20237 1.21273 1.20232 1.45208 1.07015 1.05000 1.65736 1.21899 0.85319 0.93417 1.03495 1.16133 0.80852 0.84880 0.83151 1.91030 1.76585 1.16322 1.60722 0.90875 0.89351 0.89388 0.79099 0.76698 0.91321 0.91329 0.92567 0.92570 0.96215 0.96222 0.92821 0.91322 0.90091 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.01 59.84 0.66 1.20 16 2 N -0.52 -5.07 3.12 -128.78 -0.40 -5.47 16 3 C 0.05 0.42 10.91 -16.34 -0.18 0.24 16 4 C -0.03 -0.34 6.88 -81.91 -0.56 -0.91 16 5 C 0.59 7.99 7.79 -12.86 -0.10 7.89 16 6 O -0.54 -9.17 14.83 5.19 0.08 -9.10 16 7 N -0.71 -8.76 5.54 -61.62 -0.34 -9.10 16 8 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 9 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 12 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 N -0.51 -6.59 3.21 -124.82 -0.40 -6.99 16 20 C 0.10 1.14 10.57 59.85 0.63 1.78 16 21 C 0.65 8.72 8.49 -87.07 -0.74 7.98 16 22 O -0.57 -9.34 17.59 5.17 0.09 -9.24 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.55 8.04 -51.93 -0.42 0.14 16 26 H 0.19 0.78 7.37 -52.48 -0.39 0.39 16 27 H 0.40 3.55 7.32 -40.82 -0.30 3.25 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.10 1.22 6.45 -51.92 -0.33 0.88 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -35.14 321.16 -6.63 -41.77 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.20 Total: -2.40 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.00 Total: 5.27 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.41 Total: -46.99 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.17 Total: -18.34 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.14 -6.63 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710466759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.957 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds