Wall clock time and date at job start Mon Mar 30 2020 00:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46654 * 2 1 4 4 C 1.50698 * 109.47081 * 240.00423 * 2 1 3 5 5 H 1.08000 * 119.99714 * 239.99870 * 4 2 1 6 6 C 1.37881 * 120.00432 * 59.99609 * 4 2 1 7 7 N 1.31516 * 119.99555 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47253 * 90.00355 * 8 6 4 10 10 H 1.48503 * 109.47074 * 210.00491 * 8 6 4 11 11 H 1.48507 * 109.47210 * 330.00166 * 8 6 4 12 12 N 1.46493 * 109.47052 * 120.00055 * 2 1 3 13 13 C 1.46505 * 120.00206 * 60.00325 * 12 2 1 14 14 C 1.34776 * 120.00266 * 239.99767 * 12 2 1 15 15 O 1.21287 * 119.99785 * 5.49262 * 14 12 2 16 16 C 1.50702 * 120.00475 * 185.48789 * 14 12 2 17 17 H 1.08998 * 109.46802 * 318.96900 * 16 14 12 18 18 O 1.42894 * 109.47333 * 198.96493 * 16 14 12 19 19 C 1.50701 * 109.46685 * 78.96112 * 16 14 12 20 20 C 1.39868 * 126.03768 * 76.82279 * 19 16 14 21 21 N 1.30845 * 108.20216 * 179.81229 * 20 19 16 22 22 N 1.40084 * 108.20272 * 0.44108 * 21 20 19 23 23 C 1.46492 * 126.03717 * 179.73991 * 22 21 20 24 24 C 1.34951 * 107.92680 * 359.71721 * 22 21 20 25 25 H 1.09000 * 109.46919 * 59.99824 * 1 2 3 26 26 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46833 * 299.99930 * 1 2 3 28 28 H 0.96995 * 119.99519 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47040 * 265.32006 * 13 12 2 30 30 H 1.09007 * 109.46856 * 25.31581 * 13 12 2 31 31 H 1.08999 * 109.47491 * 145.31624 * 13 12 2 32 32 H 0.96703 * 113.99580 * 300.00039 * 18 16 14 33 33 H 1.08003 * 125.89810 * 359.97438 * 20 19 16 34 34 H 1.09003 * 109.47147 * 269.97371 * 23 22 21 35 35 H 1.09008 * 109.47055 * 29.96985 * 23 22 21 36 36 H 1.09003 * 109.47506 * 149.97141 * 23 22 21 37 37 H 1.07995 * 126.12598 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7582 -3.7123 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0044 1.1505 1.9443 16 6 3.3972 -0.7772 3.2480 17 1 2.6626 -1.4705 3.6576 18 8 3.7855 0.1566 4.2575 19 6 4.6071 -1.5450 2.7816 20 6 5.8692 -1.0065 2.5103 21 7 6.6572 -1.9811 2.1346 22 7 5.9176 -3.1707 2.1453 23 6 6.4179 -4.4998 1.7857 24 6 4.6630 -2.8763 2.5458 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7095 1.1619 -3.4844 29 1 0.7844 -2.1447 2.0689 30 1 1.4484 -2.5758 0.4747 31 1 2.4973 -2.6028 1.9126 32 1 4.4390 0.8056 3.9625 33 1 6.1461 0.0337 2.5985 34 1 6.2679 -4.6682 0.7193 35 1 7.4812 -4.5627 2.0174 36 1 5.8770 -5.2574 2.3529 37 1 3.8495 -3.5776 2.6584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773930460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:50 Heat of formation + Delta-G solvation = 2.900687 kcal Electronic energy + Delta-G solvation = -21112.560285 eV Core-core repulsion = 17892.442045 eV Total energy + Delta-G solvation = -3220.118240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.31689 -39.17080 -36.36691 -35.11618 -33.23012 -32.90482 -31.00647 -29.33757 -27.57051 -26.19718 -25.43230 -25.15707 -21.52769 -21.16271 -20.34545 -18.70364 -17.50437 -16.97294 -16.20902 -15.83442 -15.43291 -15.06567 -14.73628 -14.44453 -14.10297 -13.75951 -13.16284 -13.00554 -12.78303 -12.54115 -12.50261 -12.38025 -11.83656 -11.61528 -11.37301 -11.08823 -10.94549 -10.85292 -10.68553 -10.40240 -10.26562 -10.18737 -9.40020 -9.19386 -9.06210 -8.46251 -8.18145 -7.58742 -6.08533 -4.16459 1.86621 2.49783 2.73993 3.23331 3.30838 3.32904 3.39310 3.92717 4.36923 4.46506 4.72676 4.76036 5.00530 5.06493 5.18663 5.20413 5.23661 5.27225 5.39995 5.67250 5.81169 5.97316 6.06560 6.30824 6.60661 6.76042 6.84483 6.95182 7.07088 7.41311 7.51963 7.66856 7.70445 7.76231 8.02146 8.19376 8.52040 8.81052 9.02007 9.49766 10.96772 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.007074 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.195691 B = 3957.249697 C = 4925.165266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.585 5.585 13 C 0.077 3.923 14 C 0.485 3.515 15 O -0.549 6.549 16 C 0.172 3.828 17 H 0.117 0.883 18 O -0.539 6.539 19 C -0.260 4.260 20 C 0.069 3.931 21 N -0.295 5.295 22 N -0.375 5.375 23 C 0.102 3.898 24 C 0.072 3.928 25 H 0.092 0.908 26 H 0.029 0.971 27 H 0.012 0.988 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.382 0.618 33 H 0.183 0.817 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -11.108 10.065 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.317 5.317 13 C -0.067 4.067 14 C 0.270 3.730 15 O -0.428 6.428 16 C 0.108 3.892 17 H 0.135 0.865 18 O -0.344 6.344 19 C -0.272 4.272 20 C -0.117 4.117 21 N -0.116 5.116 22 N -0.157 5.157 23 C -0.039 4.039 24 C -0.075 4.075 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.231 0.769 33 H 0.200 0.800 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.498 -11.184 9.761 16.205 hybrid contribution -0.228 -0.172 -1.175 1.209 sum 6.271 -11.356 8.586 15.556 Atomic orbital electron populations 1.22076 0.98171 0.99341 1.00849 1.18942 0.90953 0.94507 0.79864 0.91980 1.21293 1.31720 1.12962 0.90295 0.92430 1.24885 0.94984 0.94980 0.98903 1.69881 1.36346 1.22494 1.23743 0.86520 0.79100 0.79355 0.82562 1.20612 1.21039 1.20074 1.48166 1.48758 1.11429 1.23329 1.21752 0.98714 0.83633 1.02555 1.21129 0.79647 0.87946 0.84241 1.90641 1.61643 1.15333 1.75217 1.19933 0.92309 0.89334 0.87609 0.86536 1.86511 1.64881 1.46158 1.36878 1.20376 0.97280 0.93679 1.15899 1.23650 0.91458 0.99093 0.97535 1.77356 1.19877 0.90179 1.24194 1.48446 1.07774 1.07616 1.51849 1.21857 1.01650 0.78584 1.01843 1.22270 0.88774 0.96733 0.99675 0.88900 0.95218 0.96908 0.92668 0.93725 0.89892 0.92991 0.76929 0.79990 0.90577 0.89375 0.89484 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.17 16 2 C 0.26 6.60 2.63 -69.08 -0.18 6.41 16 3 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 4 C -0.52 -14.12 7.96 -34.44 -0.27 -14.40 16 5 H 0.06 1.53 7.41 -52.49 -0.39 1.15 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.58 -12.38 2.75 -175.26 -0.48 -12.86 16 13 C 0.08 1.25 8.82 59.85 0.53 1.78 16 14 C 0.48 10.06 6.91 -10.98 -0.08 9.99 16 15 O -0.55 -13.49 15.67 -13.60 -0.21 -13.71 16 16 C 0.17 2.72 3.03 -29.03 -0.09 2.64 16 17 H 0.12 1.57 7.10 -51.93 -0.37 1.21 16 18 O -0.54 -8.52 13.06 -54.39 -0.71 -9.23 16 19 C -0.26 -3.88 4.84 -105.05 -0.51 -4.39 16 20 C 0.07 1.07 11.47 -17.36 -0.20 0.87 16 21 N -0.30 -4.66 12.58 30.63 0.39 -4.28 16 22 N -0.38 -4.89 4.01 -68.16 -0.27 -5.16 16 23 C 0.10 0.83 11.47 59.84 0.69 1.52 16 24 C 0.07 0.91 10.00 -17.22 -0.17 0.74 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.43 7.09 -51.92 -0.37 1.06 16 31 H 0.05 0.67 3.57 -51.93 -0.19 0.49 16 32 H 0.38 5.33 8.06 45.56 0.37 5.70 16 33 H 0.18 2.48 7.85 -52.48 -0.41 2.07 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.18 1.56 6.88 -52.49 -0.36 1.20 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -34.67 309.30 -5.11 -39.78 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.04 Total: 5.59 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.05 Total: 3.66 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.26 Total: -46.82 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.92 Total: -22.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.67 -5.11 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773930460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.680 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds