Wall clock time and date at job start Mon Mar 30 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00194 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46992 * 64.99670 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47015 * 119.99649 * 11 9 7 14 14 H 1.48496 * 109.47036 * 240.00093 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 5 4 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 5 4 18 18 C 1.50690 * 109.47185 * 180.02562 * 17 15 5 19 19 N 1.30501 * 125.65359 * 304.69263 * 18 17 15 20 20 C 1.34128 * 109.25710 * 179.89686 * 19 18 17 21 21 C 1.34658 * 108.02354 * 0.36696 * 20 19 18 22 22 N 1.35050 * 125.65046 * 125.00105 * 18 17 15 23 23 H 0.96999 * 126.39536 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.47832 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47031 * 300.00496 * 1 2 3 26 26 H 1.08996 * 109.47115 * 59.99818 * 1 2 3 27 27 H 1.08992 * 109.47320 * 59.99819 * 3 2 1 28 28 H 1.08998 * 109.46759 * 299.99542 * 3 2 1 29 29 H 1.09000 * 109.46884 * 305.00285 * 4 3 2 30 30 H 1.09000 * 109.46955 * 184.99601 * 4 3 2 31 31 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 32 32 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 33 33 H 0.96995 * 119.99689 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.46762 * 300.00389 * 17 15 5 35 35 H 1.08998 * 109.46924 * 59.99727 * 17 15 5 36 36 H 1.08003 * 125.98561 * 180.12007 * 20 19 18 37 37 H 1.07997 * 126.59673 * 179.81804 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2864 1.4004 -2.4149 7 6 5.7443 1.7807 -2.3846 8 1 6.3761 1.4346 -1.5800 9 6 6.2713 2.5715 -3.3836 10 7 5.5018 2.9934 -4.3632 11 14 8.0783 3.0435 -3.3458 12 1 8.7213 2.4452 -2.1484 13 1 8.7477 2.5379 -4.5711 14 1 8.2025 4.5222 -3.2881 15 6 4.1001 -0.7753 -1.3338 16 8 3.8473 -1.4673 -0.3704 17 6 4.5534 -1.4134 -2.6216 18 6 4.6087 -2.9094 -2.4488 19 7 5.2813 -3.5444 -1.5282 20 6 5.0965 -4.8646 -1.6767 21 6 4.2849 -5.0553 -2.7342 22 7 3.9751 -3.8153 -3.2244 23 1 3.4068 -3.6232 -3.9867 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8514 0.5680 0.8409 30 1 3.9786 2.1764 0.0889 31 1 4.0745 0.8455 -3.3288 32 1 3.6750 2.3024 -2.3873 33 1 5.8725 3.5500 -5.0657 34 1 3.8505 -1.1656 -3.4170 35 1 5.5438 -1.0406 -2.8829 36 1 5.5268 -5.6390 -1.0591 37 1 3.9435 -6.0041 -3.1209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826017537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:33 Heat of formation + Delta-G solvation = -19.765137 kcal Electronic energy + Delta-G solvation = -20733.780087 eV Core-core repulsion = 17512.678984 eV Total energy + Delta-G solvation = -3221.101104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65330 -38.90690 -37.25918 -34.82141 -32.64887 -32.12202 -31.62097 -29.63608 -27.15072 -26.80006 -25.79633 -22.99619 -22.40060 -21.21964 -20.35268 -18.45760 -17.34408 -16.68541 -16.31344 -16.05731 -15.50116 -15.04194 -14.72369 -14.51613 -14.35168 -13.86482 -13.54835 -13.42579 -12.76167 -12.48144 -12.24607 -12.09370 -11.84775 -11.63270 -11.29686 -11.22207 -10.95172 -10.74487 -10.63220 -10.13064 -9.71062 -9.64232 -9.51265 -9.32008 -8.86030 -8.55556 -8.02966 -7.59325 -6.18862 -4.26371 2.36811 3.22713 3.31756 3.34255 3.38307 3.56820 3.65253 4.09824 4.21678 4.36436 4.84607 5.14076 5.27873 5.39316 5.47434 5.52967 5.56233 5.66974 5.68070 5.69419 5.80621 5.85740 6.03791 6.15390 6.26697 6.42110 6.47809 6.80022 7.08840 7.16557 7.48868 7.63527 7.68479 7.78658 8.06416 8.45255 8.54828 8.83265 9.23398 9.43581 10.87232 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.007452 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.607421 B = 3756.247953 C = 5431.423524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.045 3.955 4 C 0.125 3.875 5 N -0.598 5.598 6 C 0.237 3.763 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.528 3.472 16 O -0.533 6.533 17 C -0.053 4.053 18 C 0.239 3.761 19 N -0.464 5.464 20 C -0.029 4.029 21 C -0.072 4.072 22 N -0.570 5.570 23 H 0.415 0.585 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.164 0.836 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.406 -7.491 1.205 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.033 4.033 4 C 0.001 3.999 5 N -0.331 5.331 6 C 0.117 3.883 7 C -0.576 4.576 8 H 0.082 0.918 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.314 3.686 16 O -0.409 6.409 17 C -0.095 4.095 18 C -0.026 4.026 19 N -0.183 5.183 20 C -0.178 4.178 21 C -0.205 4.205 22 N -0.173 5.173 23 H 0.252 0.748 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.181 0.819 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.905 -7.568 2.192 10.477 hybrid contribution -0.074 0.364 -1.275 1.327 sum -6.980 -7.205 0.917 10.073 Atomic orbital electron populations 1.22658 0.82688 1.01980 0.99173 1.88135 1.18069 1.27379 1.95152 1.23074 0.95654 0.84931 0.99633 1.21267 0.90754 0.99348 0.88535 1.47998 1.65575 1.05768 1.13753 1.19404 0.96134 0.90290 0.82469 1.21624 0.94784 1.31765 1.09418 0.91765 1.24947 0.98218 0.95519 0.95125 1.69932 1.35693 1.35410 1.12166 0.86480 0.84791 0.78239 0.78275 1.19487 1.20857 1.20915 1.19731 0.77595 0.82330 0.88968 1.90672 1.49846 1.62100 1.38317 1.20015 1.05998 0.85088 0.98392 1.22745 0.95910 0.93175 0.90783 1.70293 1.22300 1.04612 1.21086 1.22328 1.02576 0.93832 0.99027 1.22577 1.07447 0.88758 1.01742 1.43277 1.40006 1.06717 1.27296 0.74792 0.90359 0.94769 0.94693 0.93375 0.93279 0.90131 0.88969 0.94666 0.94814 0.92632 0.88295 0.85438 0.81858 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.72 9.52 -42.24 -0.40 -7.12 16 3 C 0.05 0.74 6.28 37.16 0.23 0.97 16 4 C 0.12 2.34 5.86 -4.04 -0.02 2.31 16 5 N -0.60 -12.66 2.44 -175.05 -0.43 -13.08 16 6 C 0.24 5.44 4.96 -5.19 -0.03 5.41 16 7 C -0.54 -13.65 9.26 -34.44 -0.32 -13.97 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 11 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.53 11.50 7.29 -10.98 -0.08 11.42 16 16 O -0.53 -12.98 14.37 -1.45 -0.02 -13.00 16 17 C -0.05 -1.01 4.88 -29.04 -0.14 -1.15 16 18 C 0.24 4.42 6.95 -155.41 -1.08 3.34 16 19 N -0.46 -9.48 10.60 -10.82 -0.11 -9.60 16 20 C -0.03 -0.47 11.87 -17.82 -0.21 -0.68 16 21 C -0.07 -0.96 12.04 -16.56 -0.20 -1.16 16 22 N -0.57 -8.12 6.15 -10.23 -0.06 -8.18 16 23 H 0.41 4.41 8.96 -40.82 -0.37 4.04 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.59 7.41 -51.93 -0.38 1.20 16 30 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 31 H 0.04 0.82 6.45 -51.93 -0.33 0.48 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 34 H 0.10 1.63 7.41 -51.93 -0.38 1.24 16 35 H 0.13 2.54 7.98 -51.93 -0.41 2.13 16 36 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -33.31 320.39 -6.54 -39.85 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.23 Total: 4.60 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.83 Total: 9.62 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.13 Total: -54.12 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.42 Total: -20.13 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.31 -6.54 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826017537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.085 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds