Wall clock time and date at job start Mon Mar 30 2020 01:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99872 * 2 1 4 4 C 1.53007 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46994 * 64.16642 * 4 3 2 6 6 C 1.36938 * 119.99770 * 84.87617 * 5 4 3 7 7 H 1.08003 * 120.00356 * 39.52975 * 6 5 4 8 8 C 1.38818 * 119.99748 * 219.53515 * 6 5 4 9 9 N 1.31615 * 119.99831 * 212.75235 * 8 6 5 10 10 Si 1.86800 * 119.99867 * 32.74987 * 8 6 5 11 11 H 1.48501 * 109.47025 * 92.63310 * 10 8 6 12 12 H 1.48500 * 109.46952 * 212.63278 * 10 8 6 13 13 H 1.48498 * 109.47203 * 332.63256 * 10 8 6 14 14 C 1.46502 * 120.00050 * 264.59402 * 5 4 3 15 15 C 1.50698 * 109.46922 * 275.79890 * 14 5 4 16 16 C 1.38241 * 120.00212 * 274.81808 * 15 14 5 17 17 C 1.38231 * 119.99799 * 179.76872 * 16 15 14 18 18 C 1.38235 * 120.00349 * 0.50357 * 17 16 15 19 19 C 1.50704 * 120.00228 * 179.72277 * 18 17 16 20 20 F 1.39897 * 109.47012 * 270.02649 * 19 18 17 21 21 C 1.38237 * 120.00020 * 359.75239 * 18 17 16 22 22 C 1.38238 * 119.99889 * 359.97438 * 21 18 17 23 23 H 1.08995 * 109.46742 * 300.00373 * 1 2 3 24 24 H 1.08998 * 109.46582 * 60.00473 * 1 2 3 25 25 H 1.09000 * 109.46500 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47081 * 59.99464 * 3 2 1 27 27 H 1.09003 * 109.47114 * 299.99501 * 3 2 1 28 28 H 1.09006 * 109.46543 * 304.16383 * 4 3 2 29 29 H 1.09004 * 109.46753 * 184.17002 * 4 3 2 30 30 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.46956 * 35.79628 * 14 5 4 32 32 H 1.08996 * 109.47135 * 155.80134 * 14 5 4 33 33 H 1.07998 * 119.99600 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.99932 * 180.23016 * 17 16 15 35 35 H 1.08996 * 109.46646 * 30.02513 * 19 18 17 36 36 H 1.08995 * 109.46878 * 150.02556 * 19 18 17 37 37 H 1.07998 * 120.00309 * 179.97438 * 21 18 17 38 38 H 1.07994 * 119.99847 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9743 0.5464 -1.2441 6 6 4.1623 1.3006 -2.3715 7 1 4.6120 2.2798 -2.2975 8 6 3.7747 0.8066 -3.6096 9 7 4.4557 1.1282 -4.6889 10 14 2.2865 -0.3144 -3.7436 11 1 1.0778 0.4995 -4.0298 12 1 2.4986 -1.2893 -4.8434 13 1 2.0999 -1.0445 -2.4640 14 6 4.2179 -0.8978 -1.2798 15 6 5.6139 -1.1839 -0.7898 16 6 6.6810 -1.1198 -1.6663 17 6 7.9621 -1.3776 -1.2156 18 6 8.1750 -1.7098 0.1092 19 6 9.5710 -1.9969 0.5991 20 9 9.8439 -3.3615 0.4559 21 6 7.1074 -1.7791 0.9846 22 6 5.8269 -1.5157 0.5353 23 1 -0.3632 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6887 1.8464 -0.8900 28 1 3.8525 0.5806 0.8495 29 1 3.9786 2.1779 0.0741 30 1 4.1851 0.7827 -5.5540 31 1 3.4967 -1.4038 -0.6381 32 1 4.1107 -1.2591 -2.3025 33 1 6.5141 -0.8642 -2.7023 34 1 8.7962 -1.3239 -1.8996 35 1 10.2871 -1.4198 0.0142 36 1 9.6517 -1.7186 1.6498 37 1 7.2737 -2.0389 2.0196 38 1 4.9928 -1.5703 1.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839083784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:02 Heat of formation + Delta-G solvation = -68.221711 kcal Electronic energy + Delta-G solvation = -20567.188670 eV Core-core repulsion = 17324.066370 eV Total energy + Delta-G solvation = -3243.122300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.53076 -40.27656 -38.88402 -37.20631 -34.03771 -33.32993 -31.76839 -30.63668 -28.62652 -27.17285 -25.91936 -24.74763 -23.54719 -22.18904 -21.58308 -18.93505 -17.54511 -17.28366 -17.04352 -16.95621 -16.78457 -16.69197 -16.16328 -15.72121 -15.59177 -15.25264 -14.89109 -14.80574 -14.48986 -14.18713 -13.63710 -13.38653 -13.02441 -12.91236 -12.74454 -12.57587 -12.34853 -12.25774 -11.94071 -11.89446 -11.67326 -11.64432 -11.43574 -10.60864 -10.43876 -9.74152 -9.55684 -8.69940 -8.26657 -5.51600 0.40860 0.58923 1.33469 1.42011 1.59914 2.46473 2.77819 3.05005 3.09706 3.57552 3.67656 3.88902 4.08060 4.21130 4.22825 4.26341 4.40663 4.46599 4.56072 4.60686 4.64630 4.66499 4.68194 4.80372 4.83422 4.87955 4.98522 5.06705 5.17100 5.20034 5.26293 5.56646 5.63219 5.89209 5.95348 6.17355 6.22225 6.41508 7.02018 7.66160 8.14310 8.92742 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.006124 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.088872 B = 4571.317605 C = 5411.367723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.046 3.954 4 C 0.146 3.854 5 N -0.593 5.593 6 C -0.257 4.257 7 H 0.039 0.961 8 C 0.005 3.995 9 N -0.925 5.925 10 Si 0.897 3.103 11 H -0.300 1.300 12 H -0.307 1.307 13 H -0.229 1.229 14 C 0.189 3.811 15 C -0.089 4.089 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.155 4.155 19 C 0.111 3.889 20 F -0.230 7.230 21 C -0.099 4.099 22 C -0.121 4.121 23 H 0.060 0.940 24 H 0.024 0.976 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.261 0.739 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.152 0.848 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 -4.881 14.474 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.033 4.033 4 C 0.021 3.979 5 N -0.314 5.314 6 C -0.387 4.387 7 H 0.057 0.943 8 C -0.194 4.194 9 N -0.567 5.567 10 Si 0.724 3.276 11 H -0.228 1.228 12 H -0.235 1.235 13 H -0.151 1.151 14 C 0.064 3.936 15 C -0.091 4.091 16 C -0.140 4.140 17 C -0.126 4.126 18 C -0.156 4.156 19 C 0.056 3.944 20 F -0.211 7.211 21 C -0.117 4.117 22 C -0.140 4.140 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.169 0.831 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.145 -5.072 14.315 15.337 hybrid contribution -1.164 0.116 -1.337 1.777 sum 0.981 -4.957 12.977 13.926 Atomic orbital electron populations 1.22832 0.81061 1.03107 1.00006 1.87877 1.20156 1.28888 1.95355 1.23255 0.96641 0.84161 0.99199 1.21140 0.90426 0.97895 0.88440 1.43978 1.76545 1.03255 1.07625 1.18456 1.33950 1.01375 0.84913 0.94341 1.25918 0.99169 0.99210 0.95088 1.70139 1.38183 1.48479 0.99893 0.86497 0.83109 0.79462 0.78559 1.22774 1.23475 1.15137 1.20117 0.90561 0.84877 0.98095 1.20994 0.97541 0.95916 0.94688 1.21051 0.93498 1.00008 0.99477 1.21164 0.96524 0.98996 0.95900 1.20415 0.96965 1.04069 0.94140 1.20956 0.92410 0.76683 1.04323 1.92761 1.94810 1.35899 1.97648 1.21286 0.91583 0.98460 1.00344 1.21204 0.97964 1.00285 0.94498 0.92185 0.95713 0.89015 0.91388 0.95668 0.91069 0.91765 0.92994 0.91713 0.94927 0.88904 0.85305 0.88500 0.87131 0.83052 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -14.24 9.97 -148.98 -1.49 -15.73 16 3 C 0.05 1.58 6.26 71.98 0.45 2.03 16 4 C 0.15 5.42 6.08 86.38 0.53 5.95 16 5 N -0.59 -27.10 1.93 -706.32 -1.36 -28.46 16 6 C -0.26 -14.16 9.76 84.03 0.82 -13.34 16 7 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 8 C 0.01 0.29 4.99 84.86 0.42 0.72 16 9 N -0.93 -56.82 13.97 21.65 0.30 -56.52 16 10 Si 0.90 45.42 26.44 68.60 1.81 47.24 16 11 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 12 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 13 H -0.23 -10.91 5.92 99.48 0.59 -10.33 16 14 C 0.19 8.18 3.92 85.63 0.34 8.51 16 15 C -0.09 -3.46 5.45 -19.86 -0.11 -3.57 16 16 C -0.12 -4.94 9.72 22.27 0.22 -4.73 16 17 C -0.11 -3.59 9.70 22.27 0.22 -3.37 16 18 C -0.16 -4.30 5.60 -19.86 -0.11 -4.41 16 19 C 0.11 2.25 7.67 71.24 0.55 2.80 16 20 F -0.23 -5.89 17.34 44.97 0.78 -5.11 16 21 C -0.10 -2.63 9.70 22.27 0.22 -2.42 16 22 C -0.12 -3.78 9.67 22.27 0.22 -3.56 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 2.33 8.02 -2.38 -0.02 2.31 16 29 H 0.06 2.34 8.08 -2.38 -0.02 2.32 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.06 2.63 7.43 -2.39 -0.02 2.62 16 32 H 0.03 1.58 4.85 -2.39 -0.01 1.57 16 33 H 0.09 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 35 H 0.10 1.64 8.09 -2.39 -0.02 1.62 16 36 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -67.56 323.19 5.95 -61.61 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.91 Total: 10.40 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 5.00 Total: -13.43 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -1.06 Total: -84.98 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.49 Total: -15.73 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.78 Total: -5.11 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.81 Total: 47.24 kcal Total: -67.56 5.95 -61.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839083784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.611 kcal (2) G-P(sol) polarization free energy of solvation -67.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds