Wall clock time and date at job start Mon Mar 30 2020 01:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48506 * 109.46872 * 239.99983 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 119.99899 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99622 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99622 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47473 * 179.97438 * 17 16 15 19 19 C 1.34597 * 126.43783 * 125.00017 * 18 17 16 20 20 N 1.31072 * 106.67933 * 180.02562 * 19 18 17 21 21 N 1.28839 * 107.98903 * 359.97438 * 20 19 18 22 22 N 1.28743 * 109.40039 * 359.73711 * 21 20 19 23 23 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.08998 * 109.47844 * 59.99593 * 10 9 7 27 27 H 1.09002 * 109.46838 * 299.99323 * 10 9 7 28 28 H 1.09001 * 109.46812 * 59.99559 * 11 10 9 29 29 H 1.09002 * 109.46935 * 299.99901 * 11 10 9 30 30 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 31 31 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 33 33 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 34 34 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 35 35 H 1.09002 * 109.47153 * 300.00008 * 17 16 15 36 36 H 1.08998 * 109.47533 * 59.99637 * 17 16 15 37 37 H 1.08006 * 126.66195 * 0.03258 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 6 1.7213 -7.4551 -0.0008 14 8 0.5085 -7.4551 0.0002 15 7 2.3953 -8.6222 -0.0008 16 6 1.6628 -9.8910 -0.0002 17 6 2.6571 -11.0538 -0.0010 18 7 1.9247 -12.3226 0.0002 19 6 2.0619 -13.3258 -0.8866 20 7 1.2251 -14.2667 -0.5228 21 7 0.6066 -13.8628 0.5328 22 7 1.0311 -12.6908 0.8550 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8903 26 1 2.8722 -3.6042 0.8904 27 1 2.8720 -3.6042 -0.8895 28 1 0.8541 -5.0445 -0.8903 29 1 0.8536 -5.0451 0.8897 30 1 3.1015 -6.0926 0.8892 31 1 3.1014 -6.0917 -0.8908 32 1 3.3652 -8.6222 -0.0011 33 1 1.0365 -9.9485 0.8901 34 1 1.0358 -9.9490 -0.8899 35 1 3.2830 -10.9961 -0.8914 36 1 3.2845 -10.9961 0.8885 37 1 2.7316 -13.3506 -1.7336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845795348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:10 Heat of formation + Delta-G solvation = 31.108994 kcal Electronic energy + Delta-G solvation = -18719.636186 eV Core-core repulsion = 15533.033901 eV Total energy + Delta-G solvation = -3186.602285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.20109 -40.85315 -37.68193 -36.61177 -35.48269 -34.60013 -33.48406 -31.87100 -30.54574 -27.58099 -25.86413 -24.83219 -24.04320 -23.05693 -21.84200 -21.37486 -18.75566 -18.42737 -18.31498 -17.60631 -17.07556 -16.92755 -16.66386 -16.46926 -16.17862 -15.21174 -14.91987 -14.51829 -14.26722 -13.86744 -13.62173 -13.59239 -13.32536 -13.22044 -12.80397 -12.71628 -12.37305 -12.21427 -12.14642 -12.10189 -11.91703 -11.39285 -11.35517 -11.35203 -11.18807 -10.83147 -10.53834 -10.25158 -8.17931 -6.30305 0.24464 0.95790 1.21973 1.41007 1.44950 1.52812 1.61921 2.21316 2.42665 3.14706 3.17916 3.49508 3.55128 3.84453 3.85536 4.07812 4.11482 4.18007 4.33636 4.45155 4.61846 4.72363 4.74073 4.79146 4.88384 4.89871 5.18729 5.21288 5.31404 5.35252 5.42207 5.58743 5.79581 5.89314 6.25754 6.50283 6.88616 7.25114 7.39464 7.54017 8.93998 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.081341 B = 0.002172 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.148976 B =12886.969029 C =13097.399293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.095 4.095 11 C -0.100 4.100 12 C -0.125 4.125 13 C 0.513 3.487 14 O -0.590 6.590 15 N -0.709 5.709 16 C 0.107 3.893 17 C 0.110 3.890 18 N -0.304 5.304 19 C 0.188 3.812 20 N -0.349 5.349 21 N -0.115 5.115 22 N -0.116 5.116 23 H 0.262 0.738 24 H -0.017 1.017 25 H -0.018 1.018 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.428 0.572 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.177 0.823 36 H 0.137 0.863 37 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.713 -24.611 -3.388 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.021 4.021 10 C -0.133 4.133 11 C -0.138 4.138 12 C -0.164 4.164 13 C 0.301 3.699 14 O -0.470 6.470 15 N -0.365 5.365 16 C -0.019 4.019 17 C -0.010 4.010 18 N -0.107 5.107 19 C -0.110 4.110 20 N -0.197 5.197 21 N -0.109 5.109 22 N -0.103 5.103 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.001 0.999 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.267 0.733 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.194 0.806 36 H 0.155 0.845 37 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 13.729 -25.094 -2.557 28.718 hybrid contribution 0.424 1.505 -0.361 1.605 sum 14.153 -23.589 -2.918 27.663 Atomic orbital electron populations 1.70129 1.08112 1.27785 1.51893 1.26119 0.95789 1.03835 0.94868 0.85431 0.78141 0.77651 0.79385 1.18801 1.21285 1.18870 1.21738 0.93803 0.92166 1.50184 0.91371 1.19079 0.94789 0.94007 0.94193 1.21444 0.97736 0.92568 1.01506 1.21275 0.97684 0.93999 1.00857 1.21670 0.98741 0.88717 1.07294 1.21281 0.87671 0.86799 0.74131 1.90745 1.17019 1.88329 1.50873 1.45481 1.11415 1.03608 1.76004 1.21326 0.94963 0.83036 1.02565 1.22694 0.92588 0.74840 1.10870 1.48804 1.26768 1.17252 1.17847 1.28822 1.00550 0.83029 0.98600 1.74933 1.09274 1.26677 1.08802 1.78679 1.19974 1.03372 1.08906 1.78893 1.04918 1.10354 1.16178 0.92910 0.99837 0.99929 0.91914 0.91765 0.94033 0.94229 0.85838 0.85520 0.73293 0.92701 0.92165 0.80561 0.84481 0.69038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.84 13.29 21.44 0.28 -58.56 16 2 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 0.89 4.97 29.85 0.15 1.04 16 10 C -0.10 -3.67 5.15 30.60 0.16 -3.51 16 11 C -0.10 -3.36 4.50 30.60 0.14 -3.22 16 12 C -0.12 -2.46 5.70 29.85 0.17 -2.29 16 13 C 0.51 11.25 7.83 87.66 0.69 11.93 16 14 O -0.59 -20.51 15.98 -3.03 -0.05 -20.56 16 15 N -0.71 -7.04 5.56 -463.06 -2.57 -9.61 16 16 C 0.11 1.16 5.82 86.38 0.50 1.66 16 17 C 0.11 0.03 6.60 86.38 0.57 0.60 16 18 N -0.30 -2.88 3.44 -351.82 -1.21 -4.09 16 19 C 0.19 1.35 12.79 180.27 2.31 3.66 16 20 N -0.35 -6.63 12.36 -60.29 -0.74 -7.37 16 21 N -0.11 -2.82 13.43 37.01 0.50 -2.32 16 22 N -0.12 -2.37 13.08 37.02 0.48 -1.88 16 23 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.43 -0.06 8.47 -92.71 -0.79 -0.84 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.18 -1.78 8.08 -2.39 -0.02 -1.80 16 36 H 0.14 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.29 -1.99 8.06 -2.91 -0.02 -2.01 16 Total: -1.00 -93.13 326.06 4.38 -88.75 By element: Atomic # 1 Polarization: -10.06 SS G_CDS: 0.29 Total: -9.77 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 5.37 Total: -20.77 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.26 Total: -83.84 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -93.13 4.38 -88.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845795348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.860 kcal (2) G-P(sol) polarization free energy of solvation -93.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds