Wall clock time and date at job start Mon Mar 30 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46500 * 109.47400 * 2 1 4 4 C 1.35311 * 125.87393 * 125.29737 * 3 2 1 5 5 C 1.35349 * 106.17894 * 180.18572 * 4 3 2 6 6 C 1.50697 * 126.75108 * 179.84841 * 5 4 3 7 7 H 1.09004 * 109.47327 * 4.71496 * 6 5 4 8 8 C 1.53007 * 109.46845 * 124.71214 * 6 5 4 9 9 O 1.45201 * 109.47259 * 244.71071 * 6 5 4 10 10 C 1.34222 * 116.99867 * 150.00257 * 9 6 5 11 11 O 1.20830 * 120.00323 * 359.72425 * 10 9 6 12 12 C 1.50706 * 120.00024 * 180.02562 * 10 9 6 13 13 C 1.52998 * 109.47348 * 179.72254 * 12 10 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47025 * 59.99930 * 18 16 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47148 * 300.00133 * 18 16 14 22 22 N 1.33774 * 106.49331 * 359.58701 * 5 4 3 23 23 N 1.28635 * 108.88524 * 0.26269 * 22 5 4 24 24 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47033 * 300.00753 * 1 2 3 26 26 H 1.09007 * 109.47129 * 60.00434 * 1 2 3 27 27 H 1.09007 * 109.47241 * 239.99727 * 2 1 3 28 28 H 1.09009 * 109.47395 * 120.00033 * 2 1 3 29 29 H 1.08005 * 126.90912 * 0.03280 * 4 3 2 30 30 H 1.09004 * 109.47048 * 299.99774 * 8 6 5 31 31 H 1.08996 * 109.47091 * 60.00299 * 8 6 5 32 32 H 1.09003 * 109.47039 * 180.02562 * 8 6 5 33 33 H 1.09001 * 109.46564 * 299.72723 * 12 10 9 34 34 H 1.08998 * 109.47012 * 59.71777 * 12 10 9 35 35 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 36 36 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 37 37 H 0.96999 * 119.99905 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8799 1.9175 0.8949 5 6 3.0530 3.2080 0.5250 6 6 3.9217 4.2328 1.2077 7 1 4.4737 3.7587 2.0193 8 6 4.9074 4.8211 0.1960 9 8 3.0880 5.2937 1.7443 10 6 3.5312 5.9184 2.8465 11 8 4.5785 5.5864 3.3493 12 6 2.7192 7.0295 3.4609 13 6 3.4397 7.5621 4.7010 14 6 2.6279 8.6735 5.3150 15 1 1.6916 8.9700 4.8658 16 6 3.0807 9.3119 6.4502 17 7 4.2211 8.9512 6.9968 18 14 2.0741 10.6890 7.2116 19 1 0.7387 10.1692 7.6007 20 1 2.7735 11.2061 8.4152 21 1 1.9098 11.7861 6.2244 22 7 2.3058 3.3930 -0.5691 23 7 1.7054 2.2917 -0.8543 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.3358 1.4173 1.7366 30 1 5.5332 4.0247 -0.2068 31 1 4.3555 5.2952 -0.6155 32 1 5.5360 5.5621 0.6898 33 1 2.5990 7.8349 2.7364 34 1 1.7387 6.6480 3.7460 35 1 3.5598 6.7565 5.4254 36 1 4.4201 7.9436 4.4158 37 1 4.5398 9.4005 7.7952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861091081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:13 Heat of formation + Delta-G solvation = -3.413047 kcal Electronic energy + Delta-G solvation = -19624.600041 eV Core-core repulsion = 16404.208017 eV Total energy + Delta-G solvation = -3220.392024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.47344 -39.98970 -36.59159 -35.62534 -33.56252 -32.86114 -31.20831 -31.03439 -29.64679 -26.10929 -25.05254 -24.25988 -22.32417 -22.03790 -20.52353 -19.61058 -17.72810 -17.32800 -16.72894 -16.27141 -15.80193 -15.68139 -14.98303 -14.73284 -14.44634 -14.05159 -13.62482 -13.32551 -12.88503 -12.75919 -12.28221 -12.25485 -12.23249 -11.95144 -11.78872 -11.29963 -11.13228 -10.95386 -10.89831 -10.64326 -10.40530 -10.25045 -10.00813 -9.88766 -9.61472 -9.37610 -9.15640 -8.35168 -5.99369 -4.03931 1.33759 2.02955 2.22279 2.86146 3.31394 3.34874 3.39298 3.42535 3.95050 4.18623 4.32294 4.46152 4.55153 4.58428 4.80581 5.01812 5.06153 5.09733 5.25613 5.36011 5.41638 5.50381 5.60336 5.72556 5.89485 5.94145 6.17145 6.23501 6.26899 6.33413 6.70773 6.98908 7.68918 7.76560 8.00550 8.28656 8.33713 8.45245 9.03029 9.59890 11.11635 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.003270 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.305167 B = 8561.074533 C = 8971.375675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.294 5.294 4 C -0.033 4.033 5 C -0.018 4.018 6 C 0.172 3.828 7 H 0.099 0.901 8 C -0.161 4.161 9 O -0.352 6.352 10 C 0.458 3.542 11 O -0.507 6.507 12 C -0.104 4.104 13 C 0.034 3.966 14 C -0.529 4.529 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.242 5.242 23 N -0.085 5.085 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.193 0.807 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -19.758 -13.839 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 N -0.087 5.087 4 C -0.184 4.184 5 C -0.156 4.156 6 C 0.115 3.885 7 H 0.117 0.883 8 C -0.219 4.219 9 O -0.270 6.270 10 C 0.302 3.698 11 O -0.393 6.393 12 C -0.141 4.141 13 C -0.003 4.003 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.110 5.110 23 N -0.064 5.064 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.210 0.790 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.091 -19.553 -14.815 24.870 hybrid contribution 0.200 0.164 1.488 1.510 sum -3.891 -19.388 -13.327 23.847 Atomic orbital electron populations 1.22089 0.92503 1.03758 1.04313 1.22120 0.97140 0.76329 1.05269 1.47482 1.30060 1.12147 1.19059 1.23414 0.99790 0.95738 0.99475 1.21597 1.03379 0.93692 0.96943 1.20485 0.88136 0.84950 0.94932 0.88300 1.22109 0.98472 1.01888 0.99404 1.86724 1.50850 1.46703 1.42690 1.24806 0.85653 0.82542 0.76827 1.90615 1.23993 1.63617 1.61100 1.21774 0.99397 0.92725 1.00222 1.19008 0.95752 0.96034 0.89505 1.21137 1.06733 1.17975 1.10844 0.92358 1.25014 0.95083 0.97282 0.96918 1.69979 1.20005 1.41671 1.21201 0.86606 0.80166 0.82267 0.78645 1.20188 1.21274 1.20137 1.75089 1.07480 1.15350 1.13050 1.78286 1.20601 0.92841 1.14695 0.89819 0.91506 0.90569 0.88250 0.87561 0.78961 0.91201 0.90785 0.91083 0.88855 0.89047 0.95630 0.95530 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.04 37.15 0.37 -0.45 16 2 C 0.11 0.54 7.17 -4.05 -0.03 0.52 16 3 N -0.29 -2.90 3.44 -61.26 -0.21 -3.11 16 4 C -0.03 -0.34 11.49 -17.05 -0.20 -0.54 16 5 C -0.02 -0.25 6.14 -82.78 -0.51 -0.76 16 6 C 0.17 2.54 3.07 -27.88 -0.09 2.46 16 7 H 0.10 1.40 7.13 -51.93 -0.37 1.03 16 8 C -0.16 -2.15 9.53 37.16 0.35 -1.80 16 9 O -0.35 -6.30 9.86 -39.24 -0.39 -6.69 16 10 C 0.46 9.21 7.93 36.01 0.29 9.49 16 11 O -0.51 -11.33 15.20 -18.75 -0.29 -11.61 16 12 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 13 C 0.03 0.91 4.26 -27.89 -0.12 0.79 16 14 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.24 -3.76 12.40 33.29 0.41 -3.35 16 23 N -0.08 -1.14 12.91 60.35 0.78 -0.36 16 24 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.10 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.11 0.23 8.07 -51.92 -0.42 -0.19 16 29 H 0.19 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -35.33 326.68 -4.95 -40.27 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -5.40 Total: -4.03 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.50 Total: -6.27 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 1.72 Total: -33.18 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.67 Total: -18.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.33 -4.95 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861091081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.860 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds