Wall clock time and date at job start Mon Mar 30 2020 00:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35847 * 117.00024 * 2 1 4 4 N 1.30809 * 126.06269 * 0.02562 * 3 2 1 5 5 N 1.39921 * 108.88526 * 180.02562 * 4 3 2 6 6 C 1.46496 * 125.68774 * 179.97438 * 5 4 3 7 7 C 1.34167 * 108.62032 * 359.75032 * 5 4 3 8 8 C 1.38133 * 107.50640 * 0.39598 * 7 5 4 9 9 C 1.47256 * 126.44613 * 179.87114 * 8 7 5 10 10 O 1.21623 * 120.00043 * 179.68979 * 9 8 7 11 11 N 1.34777 * 119.99881 * 359.68611 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47235 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00370 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99790 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99912 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46948 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47312 * 119.99909 * 19 17 15 22 22 H 1.48501 * 109.47174 * 240.00157 * 19 17 15 23 23 H 1.09002 * 109.47261 * 59.99747 * 1 2 3 24 24 H 1.08997 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47371 * 299.99871 * 1 2 3 26 26 H 1.08998 * 109.46978 * 89.98056 * 6 5 4 27 27 H 1.08996 * 109.46986 * 209.97329 * 6 5 4 28 28 H 1.08994 * 109.47251 * 329.97676 * 6 5 4 29 29 H 1.07997 * 126.24790 * 180.25365 * 7 5 4 30 30 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 31 31 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 32 32 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 33 33 H 1.09000 * 109.47250 * 300.00222 * 13 12 11 34 34 H 1.09004 * 109.46862 * 60.00198 * 13 12 11 35 35 H 1.09000 * 109.46870 * 300.00218 * 14 13 12 36 36 H 1.08996 * 109.47261 * 59.99829 * 14 13 12 37 37 H 0.97001 * 120.00657 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 0.0005 5 7 2.4282 3.3801 -0.0003 6 6 2.1704 4.8222 -0.0006 7 6 3.6386 2.8013 0.0043 8 6 3.4451 1.4335 -0.0011 9 6 4.4955 0.4015 -0.0015 10 8 4.1911 -0.7760 -0.0009 11 7 5.7942 0.7618 -0.0026 12 6 6.8392 -0.2649 -0.0025 13 6 8.2140 0.4066 -0.0032 14 6 9.3053 -0.6657 -0.0037 15 6 10.6594 -0.0042 -0.0038 16 1 10.7342 1.0731 -0.0032 17 6 11.8029 -0.7746 -0.0037 18 7 11.7120 -2.0865 -0.0040 19 14 13.4814 0.0453 -0.0032 20 1 13.3117 1.5205 -0.0036 21 1 14.2331 -0.3667 1.2094 22 1 14.2337 -0.3662 -1.2156 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.1066 5.1801 1.0269 27 1 2.9825 5.3363 -0.5146 28 1 1.2304 5.0231 -0.5144 29 1 4.5904 3.3115 0.0088 30 1 6.0370 1.7009 -0.0028 31 1 6.7388 -0.8854 0.8881 32 1 6.7378 -0.8868 -0.8919 33 1 8.3146 1.0273 -0.8936 34 1 8.3152 1.0282 0.8865 35 1 9.2048 -1.2867 0.8864 36 1 9.2039 -1.2869 -0.8935 37 1 12.5164 -2.6286 -0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883960493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:12 Heat of formation + Delta-G solvation = -4.387190 kcal Electronic energy + Delta-G solvation = -19413.894069 eV Core-core repulsion = 16193.459803 eV Total energy + Delta-G solvation = -3220.434266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66182 -38.84549 -38.41207 -35.23740 -33.28838 -33.11215 -31.46498 -30.26860 -28.11149 -26.99988 -26.08793 -23.48879 -22.27637 -21.09742 -20.57869 -19.87584 -18.06388 -16.96571 -16.48590 -16.33414 -15.87687 -15.28754 -15.22656 -15.01999 -14.95742 -14.42148 -13.77144 -13.68871 -13.12697 -13.04146 -12.88133 -12.26169 -12.10886 -11.77349 -11.62232 -11.40764 -11.04615 -10.90136 -10.68442 -10.54757 -9.82006 -9.79689 -9.36138 -9.32110 -9.06991 -8.78123 -8.50673 -8.35175 -5.99517 -4.02482 1.28006 1.92710 2.15013 3.05364 3.31142 3.38524 3.41647 3.62083 3.65470 4.11552 4.39252 4.46087 4.71866 4.81122 4.97985 5.02942 5.07636 5.19513 5.32184 5.36259 5.41899 5.57718 5.85143 5.86761 6.24400 6.48468 6.60897 6.67127 6.92509 7.02079 7.06939 7.40012 7.67422 7.80675 7.89675 7.99937 8.40686 8.62731 9.04640 9.61531 11.11828 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032563 B = 0.003117 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.664422 B = 8980.977430 C = 9804.288410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.265 6.265 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.121 3.879 8 C -0.286 4.286 9 C 0.586 3.414 10 O -0.535 6.535 11 N -0.727 5.727 12 C 0.119 3.881 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.191 0.809 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.123 14.656 -0.046 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.167 6.167 3 C 0.110 3.890 4 N -0.195 5.195 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.031 4.031 8 C -0.302 4.302 9 C 0.373 3.627 10 O -0.412 6.412 11 N -0.378 5.378 12 C -0.004 4.004 13 C -0.158 4.158 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.075 0.925 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.208 0.792 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.306 14.005 -0.049 26.338 hybrid contribution 1.632 0.648 0.017 1.756 sum -20.674 14.653 -0.032 25.340 Atomic orbital electron populations 1.23028 0.77879 1.03803 1.01836 1.86536 1.21635 1.20380 1.88182 1.20426 0.90174 0.85208 0.93209 1.77292 1.13182 0.94608 1.34459 1.47661 1.03188 1.06473 1.55913 1.22002 1.04549 0.73545 1.03942 1.23095 0.91251 0.92181 0.96581 1.19841 0.91971 0.92690 1.25665 1.17100 0.81645 0.87463 0.76538 1.90807 1.82266 1.18054 1.50038 1.45993 1.05503 1.10405 1.75862 1.21612 0.86370 0.90320 1.02062 1.21879 0.92809 1.00374 1.00744 1.19037 0.91510 0.93235 0.97714 1.21246 0.91006 0.92956 1.50735 0.92621 1.25036 0.99307 0.94825 0.95351 1.69973 1.28664 1.03935 1.50671 0.86538 0.84297 0.79568 0.77580 1.19786 1.21029 1.21033 0.92540 0.87994 0.92549 0.90189 0.88751 0.88918 0.79192 0.77421 0.91770 0.91759 0.92790 0.92788 0.96240 0.96232 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 101.05 1.08 1.38 16 2 O -0.27 -4.02 9.98 -24.62 -0.25 -4.27 16 3 C 0.32 4.63 7.85 -16.66 -0.13 4.49 16 4 N -0.36 -4.45 11.90 30.79 0.37 -4.09 16 5 N -0.35 -3.21 3.97 -67.60 -0.27 -3.48 16 6 C 0.10 0.40 11.44 59.84 0.68 1.08 16 7 C 0.12 1.13 10.98 -16.57 -0.18 0.94 16 8 C -0.29 -4.01 6.14 -104.94 -0.64 -4.65 16 9 C 0.59 9.95 7.81 -12.60 -0.10 9.86 16 10 O -0.53 -11.43 16.43 -0.10 0.00 -11.43 16 11 N -0.73 -10.91 5.54 -61.44 -0.34 -11.25 16 12 C 0.12 2.16 5.67 -4.05 -0.02 2.14 16 13 C -0.12 -2.34 5.27 -26.74 -0.14 -2.48 16 14 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 15 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.19 0.91 7.46 -52.49 -0.39 0.52 16 30 H 0.39 4.43 7.39 -40.82 -0.30 4.13 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -37.30 325.97 -5.17 -42.47 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.31 Total: -2.96 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 0.00 Total: -0.14 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.49 Total: -44.99 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.25 Total: -15.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.30 -5.17 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883960493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.087 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds