Wall clock time and date at job start Mon Mar 30 2020 00:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35847 * 117.00024 * 2 1 4 4 N 1.30809 * 126.06269 * 0.02562 * 3 2 1 5 5 N 1.39921 * 108.88526 * 180.02562 * 4 3 2 6 6 C 1.46496 * 125.68774 * 179.97438 * 5 4 3 7 7 C 1.34167 * 108.62032 * 359.75032 * 5 4 3 8 8 C 1.38133 * 107.50640 * 0.39598 * 7 5 4 9 9 C 1.47256 * 126.44613 * 179.87114 * 8 7 5 10 10 O 1.21623 * 120.00043 * 179.68979 * 9 8 7 11 11 N 1.34777 * 119.99881 * 359.68611 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47235 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00370 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99790 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99912 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46948 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47312 * 119.99909 * 19 17 15 22 22 H 1.48501 * 109.47174 * 240.00157 * 19 17 15 23 23 H 1.09002 * 109.47261 * 59.99747 * 1 2 3 24 24 H 1.08997 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47371 * 299.99871 * 1 2 3 26 26 H 1.08998 * 109.46978 * 89.98056 * 6 5 4 27 27 H 1.08996 * 109.46986 * 209.97329 * 6 5 4 28 28 H 1.08994 * 109.47251 * 329.97676 * 6 5 4 29 29 H 1.07997 * 126.24790 * 180.25365 * 7 5 4 30 30 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 31 31 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 32 32 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 33 33 H 1.09000 * 109.47250 * 300.00222 * 13 12 11 34 34 H 1.09004 * 109.46862 * 60.00198 * 13 12 11 35 35 H 1.09000 * 109.46870 * 300.00218 * 14 13 12 36 36 H 1.08996 * 109.47261 * 59.99829 * 14 13 12 37 37 H 0.97001 * 120.00657 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 0.0005 5 7 2.4282 3.3801 -0.0003 6 6 2.1704 4.8222 -0.0006 7 6 3.6386 2.8013 0.0043 8 6 3.4451 1.4335 -0.0011 9 6 4.4955 0.4015 -0.0015 10 8 4.1911 -0.7760 -0.0009 11 7 5.7942 0.7618 -0.0026 12 6 6.8392 -0.2649 -0.0025 13 6 8.2140 0.4066 -0.0032 14 6 9.3053 -0.6657 -0.0037 15 6 10.6594 -0.0042 -0.0038 16 1 10.7342 1.0731 -0.0032 17 6 11.8029 -0.7746 -0.0037 18 7 11.7120 -2.0865 -0.0040 19 14 13.4814 0.0453 -0.0032 20 1 13.3117 1.5205 -0.0036 21 1 14.2331 -0.3667 1.2094 22 1 14.2337 -0.3662 -1.2156 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.1066 5.1801 1.0269 27 1 2.9825 5.3363 -0.5146 28 1 1.2304 5.0231 -0.5144 29 1 4.5904 3.3115 0.0088 30 1 6.0370 1.7009 -0.0028 31 1 6.7388 -0.8854 0.8881 32 1 6.7378 -0.8868 -0.8919 33 1 8.3146 1.0273 -0.8936 34 1 8.3152 1.0282 0.8865 35 1 9.2048 -1.2867 0.8864 36 1 9.2039 -1.2869 -0.8935 37 1 12.5164 -2.6286 -0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883960493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:12 Heat of formation + Delta-G solvation = -34.360596 kcal Electronic energy + Delta-G solvation = -19415.193813 eV Core-core repulsion = 16193.459803 eV Total energy + Delta-G solvation = -3221.734010 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.52937 -40.16894 -39.34416 -36.85363 -35.13886 -33.86535 -33.09660 -31.41319 -28.83230 -28.58854 -27.05865 -25.11578 -23.44973 -22.29692 -21.89246 -21.11197 -19.10106 -18.42181 -17.94026 -17.37269 -16.94328 -16.51018 -16.48879 -16.23383 -15.95923 -15.88387 -15.14572 -14.91387 -14.25591 -14.01947 -13.67975 -13.60538 -13.46730 -13.35225 -12.86009 -12.74754 -12.50008 -12.29985 -12.15993 -11.94896 -11.61716 -11.56030 -11.18776 -10.85673 -10.53010 -10.26866 -10.04613 -9.49721 -8.16093 -6.27522 0.48019 1.10240 1.26875 1.44412 1.44655 1.57837 2.16361 2.42063 2.45522 2.48922 3.17891 3.38803 3.79713 4.17428 4.23698 4.28668 4.31124 4.31643 4.38145 4.51530 4.54163 4.61533 4.63471 4.72362 4.79679 5.00877 5.08388 5.23380 5.50656 5.58804 5.76009 5.85981 5.88555 6.14755 6.25866 6.48355 6.74794 6.91065 7.39681 7.42259 8.96421 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032563 B = 0.003117 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.664422 B = 8980.977430 C = 9804.288410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.292 3.708 4 N -0.369 5.369 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.158 3.842 8 C -0.332 4.332 9 C 0.586 3.414 10 O -0.593 6.593 11 N -0.709 5.709 12 C 0.132 3.868 13 C -0.099 4.099 14 C 0.021 3.979 15 C -0.537 4.537 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.255 1.255 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.243 0.757 30 H 0.415 0.585 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.072 0.928 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 18.702 -0.058 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.087 3.913 4 N -0.210 5.210 5 N -0.120 5.120 6 C -0.051 4.051 7 C 0.003 3.997 8 C -0.347 4.347 9 C 0.375 3.625 10 O -0.474 6.474 11 N -0.361 5.361 12 C 0.008 3.992 13 C -0.137 4.137 14 C -0.016 4.016 15 C -0.575 4.575 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.793 3.207 20 H -0.179 1.179 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.081 0.919 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.114 0.886 29 H 0.259 0.741 30 H 0.252 0.748 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.921 18.142 -0.060 28.455 hybrid contribution 1.412 -0.515 0.024 1.503 sum -20.510 17.627 -0.037 27.043 Atomic orbital electron populations 1.23230 0.75946 1.05174 1.02372 1.86466 1.23877 1.21690 1.88382 1.20737 0.90795 0.85521 0.94250 1.77250 1.14426 0.94624 1.34707 1.48197 1.02672 1.07736 1.53393 1.22532 1.06373 0.70450 1.05741 1.23709 0.92938 0.90396 0.92690 1.19726 0.90882 0.94062 1.30068 1.17548 0.82367 0.87413 0.75180 1.90768 1.83132 1.20668 1.52838 1.45644 1.04293 1.10870 1.75306 1.21209 0.86867 0.90739 1.00419 1.21584 0.91035 0.98613 1.02444 1.18965 0.93461 0.94269 0.94951 1.21728 0.91933 0.93782 1.50046 0.91184 1.26057 1.04014 0.95379 0.94904 1.70128 1.29947 1.05777 1.51938 0.85350 0.78621 0.79285 0.77469 1.17863 1.20760 1.20765 0.91930 0.86303 0.91957 0.88453 0.85070 0.88572 0.74104 0.74784 0.93621 0.93607 0.90937 0.90938 0.99154 0.99139 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.70 113.37 1.21 1.78 16 2 O -0.30 -9.56 9.98 -86.71 -0.87 -10.43 16 3 C 0.29 8.60 7.85 85.70 0.67 9.27 16 4 N -0.37 -8.79 11.90 -169.99 -2.02 -10.82 16 5 N -0.34 -5.08 3.97 -367.80 -1.46 -6.54 16 6 C 0.09 0.30 11.44 127.77 1.46 1.76 16 7 C 0.16 2.35 10.98 84.31 0.93 3.28 16 8 C -0.33 -9.01 6.14 -20.07 -0.12 -9.13 16 9 C 0.59 20.05 7.81 86.61 0.68 20.73 16 10 O -0.59 -26.68 16.43 1.02 0.02 -26.67 16 11 N -0.71 -20.44 5.54 -466.55 -2.59 -23.02 16 12 C 0.13 4.83 5.67 86.38 0.49 5.32 16 13 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 14 C 0.02 1.11 4.97 29.85 0.15 1.26 16 15 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 18 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 19 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 26 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.24 0.82 7.46 -2.91 -0.02 0.80 16 30 H 0.41 7.96 7.39 -92.71 -0.69 7.28 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -85.93 325.97 2.10 -83.83 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 0.39 Total: 4.14 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.32 Total: 1.31 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -5.79 Total: -97.73 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.85 Total: -37.09 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -85.93 2.10 -83.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883960493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal (2) G-P(sol) polarization free energy of solvation -85.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds