Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28712 * 125.86856 * 2 1 4 4 N 1.28639 * 110.17960 * 180.24109 * 3 2 1 5 5 C 1.33777 * 108.88287 * 359.76079 * 4 3 2 6 6 C 1.35319 * 125.87002 * 179.83578 * 2 1 3 7 7 C 1.50703 * 126.90821 * 0.03085 * 6 2 1 8 8 C 1.52998 * 109.47221 * 264.71350 * 7 6 2 9 9 O 1.45196 * 109.47070 * 180.02562 * 8 7 6 10 10 C 1.34234 * 116.99938 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00068 * 179.97438 * 10 9 8 13 13 C 1.52992 * 109.47257 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47274 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46907 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00411 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99549 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00388 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47589 * 59.99940 * 19 17 15 21 21 H 1.48504 * 109.47356 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47017 * 299.99924 * 19 17 15 23 23 H 1.08991 * 109.47006 * 270.16628 * 1 2 3 24 24 H 1.09003 * 109.47106 * 30.16927 * 1 2 3 25 25 H 1.09006 * 109.46897 * 150.16228 * 1 2 3 26 26 H 1.07995 * 126.74919 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.46835 * 144.70888 * 7 6 2 28 28 H 1.08999 * 109.47176 * 24.71397 * 7 6 2 29 29 H 1.08996 * 109.47090 * 59.99931 * 8 7 6 30 30 H 1.08999 * 109.47084 * 300.00104 * 8 7 6 31 31 H 1.09004 * 109.46932 * 300.00373 * 12 10 9 32 32 H 1.08997 * 109.47392 * 59.99712 * 12 10 9 33 33 H 1.09004 * 109.47330 * 299.99977 * 13 12 10 34 34 H 1.09005 * 109.47124 * 59.99773 * 13 12 10 35 35 H 1.08999 * 109.46783 * 300.00124 * 14 13 12 36 36 H 1.09000 * 109.46608 * 60.00231 * 14 13 12 37 37 H 0.96998 * 120.00131 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0430 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5322 -0.6405 -0.0033 6 6 2.2579 -1.0965 0.0031 7 6 1.8117 -2.5360 0.0066 8 6 1.7870 -3.0588 1.4443 9 8 1.3577 -4.4459 1.4475 10 6 1.2826 -5.0578 2.6400 11 8 1.5657 -4.4542 3.6476 12 6 0.8440 -6.4972 2.7220 13 6 0.8441 -6.9479 4.1840 14 6 0.3982 -8.4092 4.2673 15 6 0.3990 -8.8532 5.7074 16 1 0.6881 -8.1623 6.4854 17 6 0.0305 -10.1416 6.0316 18 7 -0.3221 -10.9829 5.0843 19 14 0.0307 -10.6919 7.8167 20 1 -0.9063 -9.8439 8.5963 21 1 -0.4019 -12.1102 7.8976 22 1 1.4002 -10.5590 8.3755 23 1 -0.3633 0.0030 1.0276 24 1 -0.3633 0.8885 -0.5165 25 1 -0.3633 -0.8915 -0.5113 26 1 4.4321 -1.2374 -0.0069 27 1 2.5056 -3.1329 -0.5853 28 1 0.8126 -2.6078 -0.4233 29 1 1.0931 -2.4619 2.0361 30 1 2.7861 -2.9871 1.8742 31 1 -0.1614 -6.5946 2.3121 32 1 1.5315 -7.1197 2.1494 33 1 1.8493 -6.8504 4.5942 34 1 0.1563 -6.3253 4.7562 35 1 -0.6070 -8.5061 3.8573 36 1 1.0858 -9.0319 3.6951 37 1 -0.5809 -11.8895 5.3124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893758456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -10.120505 kcal Electronic energy + Delta-G solvation = -19074.332617 eV Core-core repulsion = 15853.649736 eV Total energy + Delta-G solvation = -3220.682881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.65936 -40.37477 -36.88717 -35.20449 -34.36501 -33.95572 -32.15798 -29.76639 -28.40204 -28.04738 -24.83083 -23.64119 -22.87691 -21.23694 -21.02738 -19.88130 -17.81336 -17.38838 -17.06956 -16.78461 -16.47410 -15.74862 -15.25311 -14.80338 -14.46737 -14.33669 -13.81926 -13.57588 -13.45803 -13.36027 -12.47678 -12.30950 -12.10642 -11.95051 -11.92421 -11.48470 -11.23812 -10.84680 -10.74696 -10.70589 -10.63271 -10.48444 -10.31505 -9.78773 -9.57869 -9.43134 -9.14557 -8.37485 -6.03098 -4.05232 1.11058 1.91867 2.19184 2.38513 2.67712 3.33030 3.36955 3.40349 3.92074 4.09091 4.26351 4.43826 4.45995 4.53266 4.58771 4.79476 4.83179 4.93318 5.08335 5.19224 5.33029 5.41140 5.49289 5.54915 5.59643 5.79446 6.02142 6.13059 6.44508 6.55837 6.75968 7.01740 7.62175 7.73641 7.90224 7.96339 8.12486 8.38855 9.01263 9.59083 11.08265 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.053177 B = 0.002500 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.413563 B =11198.934404 C =11265.903949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.288 5.288 3 N -0.085 5.085 4 N -0.270 5.270 5 C -0.040 4.040 6 C -0.018 4.018 7 C -0.044 4.044 8 C 0.070 3.930 9 O -0.362 6.362 10 C 0.461 3.539 11 O -0.506 6.506 12 C -0.111 4.111 13 C -0.100 4.100 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.192 0.808 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 17.854 -14.282 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.082 5.082 3 N -0.065 5.065 4 N -0.135 5.135 5 C -0.197 4.197 6 C -0.150 4.150 7 C -0.084 4.084 8 C -0.005 4.005 9 O -0.280 6.280 10 C 0.305 3.695 11 O -0.392 6.392 12 C -0.148 4.148 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.113 0.887 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.209 0.791 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.269 19.466 -14.015 24.020 hybrid contribution -0.187 -1.394 1.043 1.751 sum 1.082 18.072 -12.972 22.272 Atomic orbital electron populations 1.22354 0.72620 1.06151 1.05463 1.47274 1.09475 1.04523 1.46918 1.78340 0.96688 1.11594 1.19831 1.75122 1.09499 1.12484 1.16354 1.23472 0.97209 0.91975 1.07077 1.21894 0.91473 0.91202 1.10450 1.19947 1.04201 0.87281 0.96943 1.22835 1.01268 0.80142 0.96293 1.86507 1.79489 1.26637 1.35358 1.24471 0.73815 0.90810 0.80422 1.90662 1.45203 1.66835 1.36520 1.21712 1.03666 0.86474 1.02985 1.21593 1.01981 1.00110 0.90138 1.19120 0.96630 0.88506 0.97299 1.21194 1.45148 0.96809 0.92824 0.92596 1.25013 0.95291 0.96768 0.97353 1.69943 1.45691 1.05742 1.32195 0.86637 0.78535 0.77519 0.85201 1.20225 1.21282 1.20193 0.88722 0.87728 0.88020 0.79057 0.87374 0.89214 0.91481 0.90553 0.88022 0.87937 0.92387 0.92455 0.96360 0.96324 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.21 59.85 0.67 0.97 16 2 N -0.29 -2.47 3.74 -63.79 -0.24 -2.71 16 3 N -0.09 -1.00 13.16 60.35 0.79 -0.20 16 4 N -0.27 -3.35 12.41 30.23 0.38 -2.98 16 5 C -0.04 -0.38 11.99 -17.74 -0.21 -0.59 16 6 C -0.02 -0.15 6.25 -82.09 -0.51 -0.66 16 7 C -0.04 -0.28 5.93 -27.88 -0.17 -0.45 16 8 C 0.07 0.66 5.45 37.16 0.20 0.87 16 9 O -0.36 -4.34 10.22 -39.27 -0.40 -4.74 16 10 C 0.46 6.96 7.96 36.01 0.29 7.24 16 11 O -0.51 -9.20 15.73 -18.75 -0.29 -9.49 16 12 C -0.11 -1.71 5.81 -27.89 -0.16 -1.87 16 13 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.10 0.19 7.04 -51.93 -0.37 -0.17 16 26 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.43 7.02 -51.93 -0.36 0.07 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -34.86 325.62 -5.04 -39.90 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -5.34 Total: -5.82 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.56 Total: -9.68 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.67 Total: -31.61 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.70 Total: -14.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.86 -5.04 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893758456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.779 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds