Wall clock time and date at job start Mon Mar 30 2020 00:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34978 * 124.68087 * 2 1 4 4 O 1.21259 * 127.46816 * 359.96239 * 3 2 1 5 5 C 1.51600 * 105.06250 * 179.97438 * 3 2 1 6 6 N 1.47164 * 103.88457 * 359.80541 * 5 3 2 7 7 C 1.29564 * 107.55512 * 0.33321 * 6 5 3 8 8 N 1.38115 * 123.57237 * 179.91347 * 7 6 5 9 9 C 1.34777 * 120.00124 * 359.70363 * 8 7 6 10 10 O 1.21248 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99762 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46925 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47340 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47340 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46919 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99746 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47028 * 60.00648 * 19 17 15 21 21 H 1.48503 * 109.46851 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47412 * 300.00257 * 19 17 15 23 23 H 1.08995 * 109.47250 * 270.04467 * 1 2 3 24 24 H 1.09004 * 109.47000 * 30.03809 * 1 2 3 25 25 H 1.08994 * 109.47209 * 150.03652 * 1 2 3 26 26 H 1.08995 * 110.55168 * 118.59867 * 5 3 2 27 27 H 1.09003 * 110.54587 * 241.40010 * 5 3 2 28 28 H 0.96999 * 119.99829 * 179.69929 * 8 7 6 29 29 H 1.09000 * 109.47318 * 299.99141 * 11 9 8 30 30 H 1.09000 * 109.47161 * 59.99772 * 11 9 8 31 31 H 1.09004 * 109.46930 * 299.99901 * 12 11 9 32 32 H 1.09004 * 109.47059 * 59.99503 * 12 11 9 33 33 H 1.09004 * 109.46785 * 299.99692 * 13 12 11 34 34 H 1.09000 * 109.47196 * 59.99588 * 13 12 11 35 35 H 1.09000 * 109.46497 * 299.99439 * 14 13 12 36 36 H 1.08999 * 109.46623 * 59.99375 * 14 13 12 37 37 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2330 1.1100 0.0000 4 8 1.8613 2.2642 -0.0006 5 6 3.6610 0.6010 0.0007 6 7 3.5139 -0.8633 0.0058 7 6 2.2458 -1.1288 0.0005 8 7 1.7340 -2.4116 0.0014 9 6 2.5683 -3.4700 0.0020 10 8 3.7683 -3.2961 0.0013 11 6 2.0098 -4.8698 0.0024 12 6 3.1606 -5.8780 0.0024 13 6 2.5937 -7.2991 0.0021 14 6 3.7445 -8.3074 0.0028 15 6 3.1859 -9.7070 0.0031 16 1 2.1171 -9.8619 0.0033 17 6 4.0395 -10.7898 0.0032 18 7 5.3411 -10.6012 0.0035 19 14 3.3472 -12.5248 0.0044 20 1 2.5131 -12.7257 -1.2077 21 1 4.4642 -13.5034 0.0036 22 1 2.5142 -12.7246 1.2173 23 1 -0.3633 0.0008 1.0276 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5132 26 1 4.1857 0.9324 -0.8953 27 1 4.1850 0.9330 0.8969 28 1 0.7740 -2.5507 0.0017 29 1 1.3978 -5.0165 0.8923 30 1 1.3981 -5.0171 -0.8877 31 1 3.7723 -5.7311 -0.8878 32 1 3.7727 -5.7307 0.8922 33 1 1.9817 -7.4462 0.8921 34 1 1.9818 -7.4460 -0.8879 35 1 4.3567 -8.1603 -0.8870 36 1 4.3559 -8.1601 0.8930 37 1 5.9415 -11.3629 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898772912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:00 Heat of formation + Delta-G solvation = -33.265538 kcal Electronic energy + Delta-G solvation = -19320.976922 eV Core-core repulsion = 16099.290397 eV Total energy + Delta-G solvation = -3221.686525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17015 -39.98707 -37.84303 -35.09663 -34.80835 -34.21392 -32.66534 -30.03251 -28.01774 -27.46842 -25.79297 -23.66119 -22.14424 -20.57950 -20.14565 -20.03151 -18.49785 -17.21974 -16.99952 -16.63574 -16.15470 -15.85824 -14.94015 -14.58108 -14.37697 -14.35942 -14.26925 -13.89833 -13.39035 -13.22936 -12.68725 -12.60883 -12.03176 -11.79710 -11.69524 -11.59375 -11.00656 -10.59764 -10.57539 -10.47128 -10.36359 -10.20192 -9.71213 -9.65437 -9.27519 -9.03081 -8.95548 -8.31924 -5.96721 -3.99567 1.24863 1.68214 2.07635 2.68855 2.78859 3.34040 3.38859 3.40609 3.67129 4.27999 4.33275 4.47697 4.67195 4.72921 4.97943 5.01374 5.04463 5.12321 5.17721 5.20386 5.38601 5.67001 5.76529 6.04507 6.18163 6.29623 6.40050 6.47514 6.76628 6.95230 7.15649 7.24686 7.41318 7.71625 7.87203 7.91633 8.04259 8.45424 9.07988 9.64180 11.14544 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.061930 B = 0.002644 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.018297 B =10588.690605 C =10998.979678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.588 5.588 3 C 0.504 3.496 4 O -0.490 6.490 5 C -0.010 4.010 6 N -0.499 5.499 7 C 0.550 3.450 8 N -0.653 5.653 9 C 0.509 3.491 10 O -0.455 6.455 11 C -0.131 4.131 12 C -0.106 4.106 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.417 0.583 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 21.169 -0.071 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C 0.291 3.709 4 O -0.361 6.361 5 C -0.144 4.144 6 N -0.232 5.232 7 C 0.186 3.814 8 N -0.308 5.308 9 C 0.295 3.705 10 O -0.320 6.320 11 C -0.171 4.171 12 C -0.144 4.144 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.254 0.746 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.352 21.410 -0.065 23.781 hybrid contribution -1.713 -0.490 -0.001 1.781 sum -12.065 20.920 -0.066 24.150 Atomic orbital electron populations 1.21894 0.76703 1.04601 1.03558 1.46533 1.08531 1.07028 1.70158 1.21651 0.90624 0.84107 0.74521 1.90788 1.80740 1.16774 1.47751 1.23342 0.93942 0.90399 1.06694 1.75943 1.09631 1.09951 1.27671 1.19654 0.87250 0.81088 0.93423 1.43343 1.11801 1.01399 1.74225 1.21522 0.87058 0.86139 0.75759 1.90862 1.14344 1.84925 1.41853 1.21843 1.01697 0.88922 1.04651 1.21522 0.95604 0.93901 1.03392 1.21647 1.00196 0.92717 1.00178 1.19092 0.92841 0.92407 0.97398 1.21233 0.92775 0.91343 1.50690 0.92806 1.25042 0.94860 0.99209 0.95427 1.69959 1.01906 1.30825 1.50712 0.86672 0.78483 0.84369 0.78533 1.20293 1.21320 1.20286 0.90794 0.89196 0.90064 0.84919 0.84958 0.74617 0.88436 0.88445 0.91458 0.91452 0.93360 0.93356 0.96534 0.96535 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.67 59.84 0.64 0.98 16 2 N -0.59 -4.99 3.11 -124.03 -0.39 -5.38 16 3 C 0.50 5.16 8.38 -10.45 -0.09 5.08 16 4 O -0.49 -6.21 17.83 5.58 0.10 -6.11 16 5 C -0.01 -0.10 7.94 -4.39 -0.03 -0.14 16 6 N -0.50 -6.48 9.73 -62.11 -0.60 -7.08 16 7 C 0.55 5.73 8.25 -320.46 -2.65 3.08 16 8 N -0.65 -5.59 5.34 -12.77 -0.07 -5.66 16 9 C 0.51 6.16 7.79 -10.98 -0.09 6.07 16 10 O -0.46 -7.74 14.50 5.59 0.08 -7.66 16 11 C -0.13 -1.41 5.70 -27.88 -0.16 -1.57 16 12 C -0.11 -1.71 4.50 -26.73 -0.12 -1.83 16 13 C -0.11 -2.10 5.15 -26.73 -0.14 -2.24 16 14 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 0.42 8.05 -51.93 -0.42 0.01 16 25 H 0.08 0.16 7.16 -51.93 -0.37 -0.22 16 26 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.42 1.73 7.50 -40.82 -0.31 1.43 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -36.82 320.82 -8.79 -45.61 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.28 Total: -4.96 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.18 Total: -3.70 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.32 Total: -44.55 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.18 Total: -13.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.82 -8.79 -45.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898772912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.345 kcal (2) G-P(sol) polarization free energy of solvation -36.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds