Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34978 * 124.68087 * 2 1 4 4 O 1.21259 * 127.46816 * 359.96239 * 3 2 1 5 5 C 1.51600 * 105.06250 * 179.97438 * 3 2 1 6 6 N 1.47164 * 103.88457 * 359.80541 * 5 3 2 7 7 C 1.29564 * 107.55512 * 0.33321 * 6 5 3 8 8 N 1.38115 * 123.57237 * 179.91347 * 7 6 5 9 9 C 1.34777 * 120.00124 * 359.70363 * 8 7 6 10 10 O 1.21248 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99762 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46925 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47340 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47340 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46919 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99746 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47028 * 60.00648 * 19 17 15 21 21 H 1.48503 * 109.46851 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47412 * 300.00257 * 19 17 15 23 23 H 1.08995 * 109.47250 * 270.04467 * 1 2 3 24 24 H 1.09004 * 109.47000 * 30.03809 * 1 2 3 25 25 H 1.08994 * 109.47209 * 150.03652 * 1 2 3 26 26 H 1.08995 * 110.55168 * 118.59867 * 5 3 2 27 27 H 1.09003 * 110.54587 * 241.40010 * 5 3 2 28 28 H 0.96999 * 119.99829 * 179.69929 * 8 7 6 29 29 H 1.09000 * 109.47318 * 299.99141 * 11 9 8 30 30 H 1.09000 * 109.47161 * 59.99772 * 11 9 8 31 31 H 1.09004 * 109.46930 * 299.99901 * 12 11 9 32 32 H 1.09004 * 109.47059 * 59.99503 * 12 11 9 33 33 H 1.09004 * 109.46785 * 299.99692 * 13 12 11 34 34 H 1.09000 * 109.47196 * 59.99588 * 13 12 11 35 35 H 1.09000 * 109.46497 * 299.99439 * 14 13 12 36 36 H 1.08999 * 109.46623 * 59.99375 * 14 13 12 37 37 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2330 1.1100 0.0000 4 8 1.8613 2.2642 -0.0006 5 6 3.6610 0.6010 0.0007 6 7 3.5139 -0.8633 0.0058 7 6 2.2458 -1.1288 0.0005 8 7 1.7340 -2.4116 0.0014 9 6 2.5683 -3.4700 0.0020 10 8 3.7683 -3.2961 0.0013 11 6 2.0098 -4.8698 0.0024 12 6 3.1606 -5.8780 0.0024 13 6 2.5937 -7.2991 0.0021 14 6 3.7445 -8.3074 0.0028 15 6 3.1859 -9.7070 0.0031 16 1 2.1171 -9.8619 0.0033 17 6 4.0395 -10.7898 0.0032 18 7 5.3411 -10.6012 0.0035 19 14 3.3472 -12.5248 0.0044 20 1 2.5131 -12.7257 -1.2077 21 1 4.4642 -13.5034 0.0036 22 1 2.5142 -12.7246 1.2173 23 1 -0.3633 0.0008 1.0276 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5132 26 1 4.1857 0.9324 -0.8953 27 1 4.1850 0.9330 0.8969 28 1 0.7740 -2.5507 0.0017 29 1 1.3978 -5.0165 0.8923 30 1 1.3981 -5.0171 -0.8877 31 1 3.7723 -5.7311 -0.8878 32 1 3.7727 -5.7307 0.8922 33 1 1.9817 -7.4462 0.8921 34 1 1.9818 -7.4460 -0.8879 35 1 4.3567 -8.1603 -0.8870 36 1 4.3559 -8.1601 0.8930 37 1 5.9415 -11.3629 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898772912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -58.718948 kcal Electronic energy + Delta-G solvation = -19322.080665 eV Core-core repulsion = 16099.290397 eV Total energy + Delta-G solvation = -3222.790268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.94327 -40.92681 -38.73007 -36.62555 -35.74139 -34.91741 -34.56539 -31.59389 -29.00438 -28.00666 -27.34311 -24.93610 -23.45055 -21.79019 -21.28015 -21.02204 -19.20649 -18.37073 -17.96517 -17.88072 -17.41597 -16.87653 -16.49873 -15.75474 -15.63376 -15.39170 -14.80613 -14.74769 -14.50168 -14.36522 -13.76801 -13.63840 -13.53069 -13.26465 -12.97373 -12.73995 -12.43801 -12.35731 -12.11394 -12.07192 -11.38895 -11.30854 -11.23919 -11.01862 -10.93738 -10.54771 -10.50934 -9.77475 -8.15596 -6.27414 0.42879 0.93034 1.23694 1.42828 1.46413 1.54167 1.95398 2.02272 2.44493 2.94247 3.17425 3.44353 3.84185 3.95323 4.09815 4.21555 4.30750 4.40413 4.40789 4.52327 4.68069 4.72931 4.74817 4.89571 4.92493 5.07087 5.24757 5.38730 5.43719 5.54097 5.62405 5.68554 5.84377 5.93464 6.29059 6.49656 6.65392 6.92090 7.09602 7.42300 8.96400 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.061930 B = 0.002644 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.018297 B =10588.690605 C =10998.979678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.579 5.579 3 C 0.505 3.495 4 O -0.518 6.518 5 C -0.011 4.011 6 N -0.548 5.548 7 C 0.552 3.448 8 N -0.631 5.631 9 C 0.515 3.485 10 O -0.513 6.513 11 C -0.117 4.117 12 C -0.101 4.101 13 C -0.095 4.095 14 C 0.016 3.984 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.264 1.264 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.440 0.560 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.064 0.936 35 H -0.016 1.016 36 H -0.016 1.016 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 20.797 -0.079 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.313 5.313 3 C 0.293 3.707 4 O -0.391 6.391 5 C -0.144 4.144 6 N -0.282 5.282 7 C 0.187 3.813 8 N -0.287 5.287 9 C 0.302 3.698 10 O -0.382 6.382 11 C -0.156 4.156 12 C -0.139 4.139 13 C -0.132 4.132 14 C -0.021 4.021 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.205 4.205 18 N -0.580 5.580 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.132 0.868 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.282 0.718 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.795 21.044 -0.073 25.163 hybrid contribution -0.654 -0.350 0.002 0.742 sum -14.450 20.694 -0.071 25.239 Atomic orbital electron populations 1.22272 0.74104 1.06200 1.05092 1.46552 1.09963 1.05748 1.68987 1.21651 0.91008 0.84008 0.74027 1.90774 1.81165 1.17790 1.49414 1.23433 0.94208 0.89070 1.07662 1.75879 1.11590 1.11724 1.28961 1.19642 0.87078 0.81898 0.92668 1.42996 1.12746 1.00070 1.72919 1.21705 0.86429 0.87170 0.74468 1.90862 1.16909 1.85748 1.44705 1.21715 0.99661 0.86167 1.08088 1.21304 0.97225 0.94013 1.01359 1.21434 0.97770 0.92382 1.01652 1.19075 0.94531 0.94175 0.94287 1.21758 0.93575 0.92467 1.50018 0.91386 1.26088 0.95105 1.04353 0.94935 1.70126 1.03596 1.32235 1.52014 0.85465 0.77813 0.78192 0.79359 1.18880 1.21373 1.18875 0.89307 0.89340 0.86844 0.83905 0.83979 0.71777 0.84902 0.84877 0.93678 0.93687 0.91731 0.91711 0.99786 0.99792 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.67 127.77 1.36 1.75 16 2 N -0.58 -8.72 3.11 -664.60 -2.07 -10.79 16 3 C 0.51 9.97 8.38 87.91 0.74 10.71 16 4 O -0.52 -12.90 17.83 -2.96 -0.05 -12.95 16 5 C -0.01 -0.21 7.94 85.79 0.68 0.48 16 6 N -0.55 -14.09 9.73 -350.40 -3.41 -17.50 16 7 C 0.55 10.58 8.25 260.67 2.15 12.74 16 8 N -0.63 -8.98 5.34 -312.72 -1.67 -10.65 16 9 C 0.51 11.47 7.79 87.66 0.68 12.15 16 10 O -0.51 -17.59 14.50 -2.93 -0.04 -17.63 16 11 C -0.12 -2.12 5.70 29.85 0.17 -1.95 16 12 C -0.10 -3.20 4.50 30.59 0.14 -3.06 16 13 C -0.09 -3.52 5.15 30.59 0.16 -3.36 16 14 C 0.02 0.87 4.97 29.85 0.15 1.02 16 15 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 17 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 18 N -0.94 -58.50 13.29 21.45 0.28 -58.22 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 25 H 0.11 -0.06 7.16 -2.39 -0.02 -0.08 16 26 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.44 1.67 7.50 -92.71 -0.70 0.97 16 29 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.61 8.10 -2.38 -0.02 1.59 16 32 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -84.15 320.82 2.38 -81.77 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 0.38 Total: -0.30 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 6.93 Total: 0.33 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -6.86 Total: -97.16 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.10 Total: -30.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -84.15 2.38 -81.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898772912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.053 kcal (2) G-P(sol) polarization free energy of solvation -84.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds