Wall clock time and date at job start Mon Mar 30 2020 01:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99780 * 2 1 4 4 C 1.53004 * 109.46948 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47372 * 64.99647 * 4 3 2 6 6 C 1.46501 * 119.99984 * 270.00209 * 5 4 3 7 7 C 1.50700 * 109.47262 * 269.99964 * 6 5 4 8 8 H 1.08006 * 119.99692 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00316 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00028 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99814 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47254 * 90.00121 * 11 9 7 13 13 H 1.48503 * 109.46946 * 210.00135 * 11 9 7 14 14 H 1.48500 * 109.46854 * 330.00035 * 11 9 7 15 15 C 1.34769 * 120.00161 * 89.99825 * 5 4 3 16 16 O 1.21285 * 120.00559 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00037 * 0.02562 * 15 5 4 18 18 C 1.50704 * 109.47511 * 179.97438 * 17 15 5 19 19 C 1.34664 * 126.58651 * 275.03761 * 18 17 15 20 20 N 1.34134 * 108.01786 * 179.74146 * 19 18 17 21 21 C 1.30496 * 109.25675 * 0.37372 * 20 19 18 22 22 N 1.35047 * 108.70161 * 359.62603 * 21 20 19 23 23 H 0.96997 * 126.40535 * 180.25138 * 22 21 20 24 24 H 1.09004 * 109.46978 * 60.00495 * 1 2 3 25 25 H 1.09000 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47237 * 300.00565 * 1 2 3 27 27 H 1.08998 * 109.47786 * 59.99703 * 3 2 1 28 28 H 1.08997 * 109.47015 * 299.99209 * 3 2 1 29 29 H 1.09003 * 109.46720 * 304.99835 * 4 3 2 30 30 H 1.09004 * 109.47066 * 184.99700 * 4 3 2 31 31 H 1.09000 * 109.47279 * 29.99655 * 6 5 4 32 32 H 1.09008 * 109.47279 * 149.99731 * 6 5 4 33 33 H 0.97000 * 119.99672 * 179.97438 * 10 9 7 34 34 H 1.08992 * 109.47512 * 59.99585 * 17 15 5 35 35 H 1.09004 * 109.47075 * 299.99537 * 17 15 5 36 36 H 1.07998 * 125.99171 * 359.92955 * 19 18 17 37 37 H 1.08002 * 125.65353 * 179.89694 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1063 -0.8926 -1.3401 7 6 5.5018 -1.2982 -0.9409 8 1 6.2203 -0.5461 -0.6502 9 6 5.8614 -2.6292 -0.9478 10 7 7.0793 -2.9830 -0.5999 11 14 4.6187 -3.9298 -1.4514 12 1 4.7045 -4.1555 -2.9166 13 1 4.9128 -5.1982 -0.7371 14 1 3.2511 -3.4698 -1.1005 15 6 4.2634 1.3328 -2.3199 16 8 4.6292 0.8190 -3.3559 17 6 4.1306 2.8311 -2.2279 18 6 4.5082 3.4510 -3.5487 19 6 5.7507 3.7656 -3.9616 20 7 5.6585 4.2895 -5.1930 21 6 4.4052 4.3188 -5.5555 22 7 3.6541 3.8017 -4.5593 23 1 2.6897 3.6978 -4.5599 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6886 1.8465 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8507 0.5686 0.8428 30 1 3.9785 2.1766 0.0902 31 1 3.3859 -1.3632 -0.6711 32 1 3.9139 -1.2124 -2.3643 33 1 7.3322 -3.9195 -0.6045 34 1 4.7924 3.2074 -1.4480 35 1 3.0998 3.0903 -1.9860 36 1 6.6620 3.6188 -3.4010 37 1 4.0310 4.6906 -6.4979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900561943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:30 Heat of formation + Delta-G solvation = -44.804516 kcal Electronic energy + Delta-G solvation = -20639.901622 eV Core-core repulsion = 17417.714729 eV Total energy + Delta-G solvation = -3222.186893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.94623 -40.68531 -38.72017 -36.54565 -34.81228 -33.75796 -32.81389 -31.28677 -29.61229 -27.79166 -27.06337 -24.34481 -23.91583 -22.47036 -21.87558 -20.13099 -19.11119 -18.72942 -18.18402 -17.31420 -16.94285 -16.74861 -16.19848 -15.94346 -15.63957 -15.54130 -15.02199 -14.75927 -14.41950 -14.29181 -14.02656 -13.78018 -13.47401 -13.16934 -13.01776 -12.76612 -12.66217 -12.46218 -12.00711 -11.91544 -11.72098 -10.98814 -10.95062 -10.81755 -10.69112 -10.50353 -9.37613 -9.30397 -8.32888 -6.35935 1.06719 1.30995 1.33766 1.44206 1.80940 2.16628 2.29658 2.31285 2.48622 2.98356 3.03575 3.64616 3.83002 4.02876 4.06697 4.22235 4.30573 4.45708 4.52994 4.56044 4.56997 4.63667 4.65857 4.71719 4.88867 4.97834 5.01038 5.02752 5.26752 5.49649 5.65890 5.77834 6.26001 6.36004 6.60994 6.65424 6.77210 7.15072 7.24466 7.45745 8.84075 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.006570 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.274705 B = 4261.052254 C = 5504.176177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.420 6.420 3 C 0.045 3.955 4 C 0.100 3.900 5 N -0.591 5.591 6 C 0.236 3.764 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.011 3.989 10 N -0.946 5.946 11 Si 0.942 3.058 12 H -0.279 1.279 13 H -0.273 1.273 14 H -0.241 1.241 15 C 0.496 3.504 16 O -0.591 6.591 17 C -0.051 4.051 18 C -0.002 4.002 19 C -0.045 4.045 20 N -0.541 5.541 21 C 0.191 3.809 22 N -0.553 5.553 23 H 0.434 0.566 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.049 0.951 32 H 0.006 0.994 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 15.836 0.378 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.032 4.032 4 C -0.023 4.023 5 N -0.321 5.321 6 C 0.114 3.886 7 C -0.570 4.570 8 H 0.051 0.949 9 C -0.187 4.187 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.205 1.205 13 H -0.198 1.198 14 H -0.165 1.165 15 C 0.285 3.715 16 O -0.471 6.471 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.192 4.192 20 N -0.261 5.261 21 C -0.093 4.093 22 N -0.158 5.158 23 H 0.275 0.725 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -16.820 15.524 -0.570 22.896 hybrid contribution -0.847 -1.308 0.195 1.571 sum -17.667 14.215 -0.375 22.679 Atomic orbital electron populations 1.22859 0.79978 1.03086 1.00925 1.88005 1.21150 1.29216 1.95577 1.23209 0.92880 0.84802 1.02278 1.21987 0.93547 1.00594 0.86137 1.47887 1.64780 1.07098 1.12375 1.19169 0.94871 0.78656 0.95950 1.21638 0.97621 0.92892 1.44873 0.94942 1.25783 0.97211 1.00994 0.94672 1.70046 1.20397 1.18000 1.50168 0.85793 0.80713 0.78556 0.78399 1.20519 1.19842 1.16464 1.21270 0.76834 0.90486 0.82943 1.90686 1.48268 1.76327 1.31840 1.20189 1.06935 0.88395 0.93679 1.20634 0.91112 1.06586 0.93587 1.22150 0.97149 1.05678 0.94232 1.70188 1.20512 1.22071 1.13320 1.25699 0.86133 1.01283 0.96167 1.43123 1.11196 1.47657 1.13789 0.72531 0.93461 0.90154 0.92133 0.88900 0.92010 0.90696 0.85369 0.93286 0.97585 0.92396 0.84343 0.84382 0.82560 0.73536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.42 -11.66 9.53 -148.98 -1.42 -13.08 16 3 C 0.05 0.91 6.28 71.98 0.45 1.37 16 4 C 0.10 2.65 5.62 86.38 0.49 3.13 16 5 N -0.59 -23.01 2.42 -826.14 -2.00 -25.01 16 6 C 0.24 11.85 4.05 85.63 0.35 12.19 16 7 C -0.53 -32.01 9.94 25.60 0.25 -31.76 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 9 C 0.01 0.68 5.47 84.65 0.46 1.14 16 10 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 11 Si 0.94 46.54 27.47 68.60 1.88 48.43 16 12 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.24 -10.99 6.54 99.48 0.65 -10.34 16 15 C 0.50 18.93 7.67 87.66 0.67 19.61 16 16 O -0.59 -29.75 15.61 -3.04 -0.05 -29.80 16 17 C -0.05 -1.21 4.81 29.10 0.14 -1.07 16 18 C 0.00 -0.06 5.73 40.95 0.23 0.17 16 19 C -0.04 -1.49 11.79 83.52 0.98 -0.51 16 20 N -0.54 -17.53 11.25 -200.31 -2.25 -19.78 16 21 C 0.19 4.35 13.04 180.26 2.35 6.70 16 22 N -0.55 -11.61 6.15 -186.49 -1.15 -12.75 16 23 H 0.43 5.62 8.96 -92.71 -0.83 4.79 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.02 7.30 -2.39 -0.02 1.00 16 29 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.13 2.25 6.44 -2.39 -0.02 2.23 16 31 H 0.05 2.39 6.17 -2.39 -0.01 2.38 16 32 H 0.01 0.33 6.85 -2.38 -0.02 0.32 16 33 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 34 H 0.14 2.60 7.40 -2.39 -0.02 2.58 16 35 H 0.14 1.93 7.26 -2.38 -0.02 1.92 16 36 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 37 H 0.25 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -91.70 316.06 3.15 -88.55 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.20 Total: 11.68 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 7.63 Total: 12.75 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.10 Total: -118.53 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.47 Total: -42.88 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.43 kcal Total: -91.70 3.15 -88.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900561943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.748 kcal (2) G-P(sol) polarization free energy of solvation -91.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds