Wall clock time and date at job start Mon Mar 30 2020 01:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99922 * 2 1 4 4 C 1.52992 * 109.47002 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47379 * 64.99588 * 4 3 2 6 6 C 1.37090 * 120.00369 * 270.00139 * 5 4 3 7 7 H 1.08000 * 120.00326 * 140.61336 * 6 5 4 8 8 C 1.38948 * 119.99587 * 320.61999 * 6 5 4 9 9 N 1.31416 * 119.99612 * 159.11381 * 8 6 5 10 10 Si 1.86797 * 120.00358 * 339.10966 * 8 6 5 11 11 H 1.48498 * 109.47345 * 95.81316 * 10 8 6 12 12 H 1.48501 * 109.46980 * 215.81490 * 10 8 6 13 13 H 1.48504 * 109.47081 * 335.81096 * 10 8 6 14 14 C 1.34775 * 119.99618 * 89.99825 * 5 4 3 15 15 O 1.21299 * 120.00485 * 5.01258 * 14 5 4 16 16 C 1.50705 * 120.00166 * 185.01265 * 14 5 4 17 17 C 1.52996 * 109.47599 * 185.44934 * 16 14 5 18 18 C 1.50694 * 109.47436 * 179.20302 * 17 16 14 19 19 C 1.39871 * 126.04144 * 270.00122 * 18 17 16 20 20 N 1.30831 * 108.20349 * 179.73813 * 19 18 17 21 21 N 1.40088 * 108.20646 * 0.40345 * 20 19 18 22 22 H 0.96996 * 126.03878 * 179.85817 * 21 20 19 23 23 C 1.34944 * 107.92264 * 359.58727 * 21 20 19 24 24 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47241 * 300.00151 * 1 2 3 26 26 H 1.09003 * 109.47340 * 60.00216 * 1 2 3 27 27 H 1.09004 * 109.47170 * 59.99452 * 3 2 1 28 28 H 1.09001 * 109.46837 * 300.00014 * 3 2 1 29 29 H 1.09000 * 109.46936 * 304.99764 * 4 3 2 30 30 H 1.09002 * 109.47354 * 184.99510 * 4 3 2 31 31 H 0.97007 * 119.99889 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.46578 * 65.44199 * 16 14 5 33 33 H 1.09007 * 109.46712 * 305.44961 * 16 14 5 34 34 H 1.08996 * 109.47065 * 59.19810 * 17 16 14 35 35 H 1.09003 * 109.46707 * 299.20262 * 17 16 14 36 36 H 1.08000 * 125.89712 * 359.97438 * 19 18 17 37 37 H 1.08005 * 126.12518 * 180.21614 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7986 -1.3369 7 1 3.7941 -1.3131 -2.2369 8 6 4.6092 -1.5180 -0.2643 9 7 4.3592 -2.8037 -0.1561 10 14 5.6533 -0.6580 1.0239 11 1 4.7986 -0.2674 2.1738 12 1 6.7210 -1.5784 1.4908 13 1 6.2705 0.5557 0.4311 14 6 4.2615 1.3336 -2.3218 15 8 4.2424 2.5424 -2.2218 16 6 4.6048 0.6922 -3.6416 17 6 5.0162 1.7736 -4.6426 18 6 5.3783 1.1305 -5.9565 19 6 6.6502 0.6866 -6.3325 20 7 6.5677 0.1828 -7.5371 21 7 5.2404 0.2987 -7.9700 22 1 4.8925 0.0084 -8.8276 23 6 4.5303 0.8802 -6.9808 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9785 2.1765 0.0888 31 1 4.7172 -3.3061 0.5926 32 1 3.7352 0.1565 -4.0222 33 1 5.4297 -0.0066 -3.5022 34 1 5.8770 2.3186 -4.2554 35 1 4.1864 2.4643 -4.7927 36 1 7.5451 0.7457 -5.7308 37 1 3.4743 1.1059 -7.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909563641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:40 Heat of formation + Delta-G solvation = -20.539216 kcal Electronic energy + Delta-G solvation = -20518.042143 eV Core-core repulsion = 17296.907472 eV Total energy + Delta-G solvation = -3221.134670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.02788 -40.68319 -38.60764 -36.65244 -34.77931 -33.87146 -32.20510 -31.35983 -29.63480 -27.22911 -26.70936 -25.19846 -23.49709 -22.81927 -20.89916 -20.63693 -18.69090 -18.64694 -17.96608 -17.48159 -16.91942 -16.37598 -16.19175 -15.79008 -15.61436 -15.31541 -15.23804 -14.72259 -14.39062 -14.16566 -13.67028 -13.45895 -13.24676 -13.10890 -13.00906 -12.73010 -12.52223 -12.35352 -11.92361 -11.90696 -11.67708 -11.39586 -11.01501 -10.55472 -10.52419 -10.34352 -9.62575 -9.32519 -8.38895 -5.98218 1.03341 1.23326 1.34870 1.45148 1.86170 1.97277 2.14852 2.26711 2.70200 2.95994 3.20940 3.91132 4.10672 4.14212 4.18419 4.28199 4.40837 4.45140 4.53047 4.56803 4.60118 4.65668 4.75253 4.80329 4.84775 4.87071 5.01962 5.02935 5.41499 5.46964 5.55382 5.75148 6.17892 6.33547 6.44123 6.51873 6.77895 7.08362 7.52762 7.87075 8.76032 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.005597 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.668359 B = 5001.688848 C = 5524.023238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.090 3.910 5 N -0.470 5.470 6 C -0.316 4.316 7 H 0.078 0.922 8 C 0.034 3.966 9 N -0.899 5.899 10 Si 0.920 3.080 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.265 1.265 14 C 0.476 3.524 15 O -0.617 6.617 16 C -0.103 4.103 17 C -0.010 4.010 18 C -0.249 4.249 19 C 0.046 3.954 20 N -0.331 5.331 21 N -0.472 5.472 22 H 0.452 0.548 23 C 0.072 3.928 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.274 0.726 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.192 0.808 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 6.930 -7.389 10.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.033 4.033 5 N -0.191 5.191 6 C -0.444 4.444 7 H 0.095 0.905 8 C -0.169 4.169 9 N -0.537 5.537 10 Si 0.747 3.253 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.190 1.190 14 C 0.267 3.733 15 O -0.504 6.504 16 C -0.143 4.143 17 C -0.049 4.049 18 C -0.261 4.261 19 C -0.140 4.140 20 N -0.154 5.154 21 N -0.181 5.181 22 H 0.298 0.702 23 C -0.077 4.077 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.208 0.792 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.095 6.601 -8.177 10.956 hybrid contribution -0.356 0.190 1.157 1.225 sum -3.451 6.791 -7.021 10.359 Atomic orbital electron populations 1.22854 0.80594 1.03030 1.00430 1.88173 1.20518 1.27588 1.95332 1.22810 0.93261 0.85045 1.00551 1.21834 0.94197 0.98828 0.88427 1.43783 1.58613 1.06422 1.10286 1.18693 1.42008 0.79953 1.03760 0.90461 1.25730 0.96788 0.95442 0.98977 1.69844 1.42645 1.09247 1.31917 0.86235 0.79542 0.79134 0.80396 1.19085 1.21448 1.18959 1.21168 0.78075 0.86410 0.87601 1.90504 1.58380 1.15243 1.86284 1.21338 1.02750 0.99031 0.91193 1.19433 1.01393 0.95144 0.88901 1.20236 0.93735 1.13215 0.98896 1.24127 0.99464 0.97050 0.93327 1.77218 0.97940 1.25356 1.14913 1.46281 1.06185 1.48890 1.16776 0.70206 1.22873 0.99649 0.96753 0.88390 0.89679 0.92709 0.93815 0.90705 0.93688 0.92084 0.89026 0.91617 0.89897 0.90139 0.91825 0.90976 0.79156 0.77514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.62 10.18 -148.98 -1.52 -18.14 16 3 C 0.06 2.30 6.28 71.98 0.45 2.76 16 4 C 0.09 3.91 4.67 86.38 0.40 4.32 16 5 N -0.47 -22.36 2.12 -635.54 -1.35 -23.71 16 6 C -0.32 -16.64 8.43 84.04 0.71 -15.93 16 7 H 0.08 4.35 7.45 -2.91 -0.02 4.33 16 8 C 0.03 1.84 5.32 84.93 0.45 2.29 16 9 N -0.90 -51.19 13.96 21.66 0.30 -50.89 16 10 Si 0.92 42.75 25.01 68.60 1.72 44.46 16 11 H -0.26 -11.71 6.72 99.48 0.67 -11.04 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 C 0.48 21.23 7.62 87.66 0.67 21.90 16 15 O -0.62 -28.83 15.55 -3.09 -0.05 -28.88 16 16 C -0.10 -3.86 4.33 29.85 0.13 -3.73 16 17 C -0.01 -0.30 5.00 29.84 0.15 -0.15 16 18 C -0.25 -6.82 5.35 -20.15 -0.11 -6.93 16 19 C 0.05 1.29 11.96 85.24 1.02 2.31 16 20 N -0.33 -9.28 12.70 -57.03 -0.72 -10.01 16 21 N -0.47 -10.03 7.36 -57.59 -0.42 -10.46 16 22 H 0.45 6.18 8.96 -213.33 -1.91 4.27 16 23 C 0.07 1.55 11.90 83.54 0.99 2.54 16 24 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.77 3.42 -2.39 -0.01 2.77 16 30 H 0.09 3.77 7.36 -2.39 -0.02 3.76 16 31 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 32 H 0.08 3.02 8.04 -2.39 -0.02 3.00 16 33 H 0.08 3.18 7.86 -2.38 -0.02 3.16 16 34 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 35 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 36 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.21 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -68.62 314.09 3.20 -65.41 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.87 Total: 20.75 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.12 Total: 11.45 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -2.19 Total: -95.06 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -1.56 Total: -47.01 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.72 Total: 44.46 kcal Total: -68.62 3.20 -65.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.873 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds