Wall clock time and date at job start Mon Mar 30 2020 00:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46469 * 2 1 4 4 C 1.46503 * 119.99985 * 269.99215 * 3 2 1 5 5 C 1.52997 * 109.47406 * 270.00724 * 4 3 2 6 6 H 1.09003 * 109.47462 * 59.99776 * 5 4 3 7 7 O 1.42901 * 109.46734 * 299.99771 * 5 4 3 8 8 C 1.50699 * 109.46957 * 179.97438 * 5 4 3 9 9 H 1.07991 * 120.00194 * 359.97438 * 8 5 4 10 10 C 1.37884 * 119.99663 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99574 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 120.00083 * 0.02562 * 10 8 5 13 13 H 1.48499 * 109.47008 * 89.99481 * 12 10 8 14 14 H 1.48500 * 109.47036 * 209.99697 * 12 10 8 15 15 H 1.48503 * 109.47229 * 329.99592 * 12 10 8 16 16 C 1.39818 * 120.00071 * 89.99975 * 3 2 1 17 17 C 1.38898 * 120.04929 * 180.24952 * 16 3 2 18 18 C 1.38101 * 119.95169 * 180.27777 * 17 16 3 19 19 C 1.38490 * 120.04646 * 359.44431 * 18 17 16 20 20 F 1.35095 * 119.95003 * 180.27941 * 19 18 17 21 21 C 1.38441 * 120.09878 * 0.30110 * 19 18 17 22 22 C 1.50699 * 119.97351 * 179.97438 * 21 19 18 23 23 C 1.38142 * 120.05061 * 359.97438 * 21 19 18 24 24 H 1.09003 * 109.46891 * 60.00781 * 1 2 3 25 25 H 1.09000 * 109.46462 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47615 * 300.00201 * 1 2 3 27 27 H 1.08999 * 109.47615 * 239.99799 * 2 1 3 28 28 H 1.09003 * 109.46891 * 119.99219 * 2 1 3 29 29 H 1.09000 * 109.46917 * 30.00492 * 4 3 2 30 30 H 1.09003 * 109.46993 * 150.00214 * 4 3 2 31 31 H 0.96695 * 114.00615 * 299.99952 * 7 5 4 32 32 H 0.97001 * 119.99709 * 179.97438 * 11 10 8 33 33 H 1.08004 * 120.02702 * 0.02562 * 17 16 3 34 34 H 1.08002 * 119.97997 * 179.72926 * 18 17 16 35 35 H 1.09001 * 109.46860 * 90.00526 * 22 21 19 36 36 H 1.09003 * 109.46968 * 210.00182 * 22 21 19 37 37 H 1.08997 * 109.47188 * 330.00491 * 22 21 19 38 38 H 1.07998 * 120.02256 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.7075 1.8315 -1.7104 6 1 3.8745 0.7623 -1.8407 7 8 4.5999 2.3352 -0.7144 8 6 3.9584 2.5414 -3.0158 9 1 3.1664 3.1070 -3.4838 10 6 5.1993 2.4687 -3.6126 11 7 5.4181 3.0878 -4.7521 12 14 6.5690 1.4898 -2.8033 13 1 6.5282 0.0870 -3.2888 14 1 7.8804 2.0951 -3.1482 15 1 6.3872 1.5090 -1.3296 16 6 2.2512 2.0405 1.2109 17 6 2.7091 3.3518 1.2120 18 6 2.9440 3.9990 2.4092 19 6 2.7123 3.3454 3.6079 20 9 2.9374 3.9823 4.7779 21 6 2.2509 2.0401 3.6091 22 6 2.0003 1.3314 4.9152 23 6 2.0200 1.3869 2.4140 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.5817 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1385 31 1 4.5069 3.2828 -0.5459 32 1 6.2912 3.0370 -5.1717 33 1 2.8852 3.8636 0.2774 34 1 3.3042 5.0172 2.4106 35 1 0.9710 1.5030 5.2301 36 1 2.1673 0.2620 4.7862 37 1 2.6814 1.7165 5.6741 38 1 1.6596 0.3688 2.4155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931622039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:37 Heat of formation + Delta-G solvation = -84.316281 kcal Electronic energy + Delta-G solvation = -20806.151052 eV Core-core repulsion = 17562.330839 eV Total energy + Delta-G solvation = -3243.820213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.59596 -40.71099 -38.37885 -36.74527 -34.43444 -33.73480 -31.99657 -31.37647 -29.16249 -27.65699 -26.42653 -24.35948 -22.91382 -22.61815 -20.87343 -19.41348 -18.54188 -17.54241 -17.44664 -16.83515 -16.59846 -16.36893 -15.85094 -15.57459 -15.36024 -14.93881 -14.43619 -14.33362 -14.13241 -13.98107 -13.77607 -13.72025 -13.51775 -12.99518 -12.92829 -12.77398 -12.68782 -12.47856 -12.39085 -12.03334 -11.89074 -11.50706 -11.13437 -10.83354 -10.60278 -10.08548 -9.69911 -8.36293 -7.98967 -6.50184 0.42254 0.56321 1.36918 1.44198 1.73861 2.25279 2.42181 2.84111 3.02874 3.58160 3.81024 3.94694 4.00533 4.07396 4.27218 4.35025 4.38043 4.47774 4.55307 4.60149 4.64702 4.80761 4.86512 4.91197 4.95760 5.01235 5.06811 5.22217 5.32468 5.37618 5.42338 5.46475 5.48203 5.52084 5.99722 6.07313 6.41063 6.64128 6.67995 7.18019 7.33485 8.77645 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.005984 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.278040 B = 4678.191936 C = 5374.521453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.618 5.618 4 C 0.116 3.884 5 C 0.188 3.812 6 H 0.047 0.953 7 O -0.576 6.576 8 C -0.562 4.562 9 H 0.044 0.956 10 C 0.034 3.966 11 N -0.937 5.937 12 Si 0.934 3.066 13 H -0.287 1.287 14 H -0.301 1.301 15 H -0.209 1.209 16 C 0.223 3.777 17 C -0.182 4.182 18 C -0.102 4.102 19 C -0.001 4.001 20 F -0.156 7.156 21 C -0.074 4.074 22 C -0.110 4.110 23 C -0.184 4.184 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.361 0.639 32 H 0.266 0.734 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -5.465 16.462 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.012 4.012 3 N -0.326 5.326 4 C -0.007 4.007 5 C 0.129 3.871 6 H 0.065 0.935 7 O -0.383 6.383 8 C -0.600 4.600 9 H 0.062 0.938 10 C -0.166 4.166 11 N -0.577 5.577 12 Si 0.759 3.241 13 H -0.214 1.214 14 H -0.228 1.228 15 H -0.131 1.131 16 C 0.119 3.881 17 C -0.204 4.204 18 C -0.122 4.122 19 C -0.022 4.022 20 F -0.135 7.135 21 C -0.075 4.075 22 C -0.166 4.166 23 C -0.207 4.207 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.209 0.791 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.004 -6.144 16.216 19.539 hybrid contribution 0.764 0.738 -0.560 1.201 sum -8.240 -5.406 15.656 18.500 Atomic orbital electron populations 1.22138 0.95066 1.02869 1.01850 1.21572 0.94866 0.81691 1.03083 1.46769 1.69760 1.13630 1.02391 1.21908 0.96912 0.97365 0.84546 1.19998 0.87437 0.94451 0.85183 0.93532 1.86671 1.62725 1.27945 1.60955 1.21791 0.97992 1.33232 1.07023 0.93791 1.25751 1.01386 0.95199 0.94308 1.70074 1.24207 1.44418 1.18969 0.86063 0.77157 0.77614 0.83284 1.21372 1.22809 1.13083 1.18015 0.92230 0.91442 0.86393 1.20620 1.07227 0.94502 0.98033 1.20983 0.99735 1.00813 0.90653 1.17427 1.10924 0.92850 0.81042 1.91380 1.93507 1.82066 1.46557 1.19889 0.98092 0.92364 0.97188 1.20757 1.02912 1.00706 0.92260 1.20528 1.09518 1.01399 0.89220 0.93397 0.89855 0.92587 0.91106 0.89737 0.90429 0.91027 0.79103 0.92528 0.85467 0.84142 0.89740 0.89632 0.91568 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.24 71.98 0.74 -2.35 16 2 C 0.11 2.60 5.88 86.38 0.51 3.10 16 3 N -0.62 -18.26 2.55 -697.19 -1.78 -20.04 16 4 C 0.12 4.04 4.94 86.38 0.43 4.47 16 5 C 0.19 8.07 2.58 29.85 0.08 8.15 16 6 H 0.05 2.09 7.57 -2.39 -0.02 2.07 16 7 O -0.58 -24.38 8.78 -148.98 -1.31 -25.69 16 8 C -0.56 -29.85 9.34 25.60 0.24 -29.61 16 9 H 0.04 2.54 7.99 -2.92 -0.02 2.52 16 10 C 0.03 1.89 5.47 84.66 0.46 2.36 16 11 N -0.94 -56.94 13.96 21.45 0.30 -56.64 16 12 Si 0.93 44.67 26.99 68.60 1.85 46.52 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 15 H -0.21 -9.66 5.31 99.48 0.53 -9.13 16 16 C 0.22 6.60 6.20 38.17 0.24 6.84 16 17 C -0.18 -5.48 7.78 22.40 0.17 -5.31 16 18 C -0.10 -2.92 10.02 22.30 0.22 -2.69 16 19 C 0.00 -0.04 7.24 22.38 0.16 0.12 16 20 F -0.16 -4.49 16.47 44.97 0.74 -3.75 16 21 C -0.07 -1.87 5.88 -19.84 -0.12 -1.99 16 22 C -0.11 -2.05 9.83 71.24 0.70 -1.35 16 23 C -0.18 -4.72 8.86 22.40 0.20 -4.52 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.73 8.07 -2.39 -0.02 1.71 16 28 H 0.08 1.75 6.20 -2.39 -0.01 1.73 16 29 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 30 H 0.07 2.48 6.19 -2.39 -0.01 2.47 16 31 H 0.36 14.06 7.03 -74.06 -0.52 13.54 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.13 3.93 4.79 -2.91 -0.01 3.91 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 37 H 0.07 1.26 7.63 -2.39 -0.02 1.24 16 38 H 0.15 3.05 6.14 -2.91 -0.02 3.03 16 Total: -1.00 -63.73 309.22 4.20 -59.52 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.37 Total: 22.88 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.03 Total: -22.80 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.48 Total: -76.68 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.31 Total: -25.69 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.74 Total: -3.75 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.85 Total: 46.52 kcal Total: -63.73 4.20 -59.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931622039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.792 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds