Wall clock time and date at job start Mon Mar 30 2020 00:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34422 * 124.34533 * 2 1 4 4 O 1.21276 * 124.94722 * 0.41417 * 3 2 1 5 5 C 1.51287 * 110.11469 * 180.38736 * 3 2 1 6 6 C 1.54638 * 104.19349 * 16.25230 * 5 3 2 7 7 C 1.46762 * 124.35463 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.24862 * 282.09689 * 7 2 1 9 9 C 1.50706 * 110.24044 * 44.00364 * 7 2 1 10 10 O 1.21275 * 120.00404 * 18.54903 * 9 7 2 11 11 N 1.34779 * 119.99413 * 198.54768 * 9 7 2 12 12 C 1.46506 * 119.99461 * 180.02562 * 11 9 7 13 13 C 1.53946 * 113.73897 * 251.67149 * 12 11 9 14 14 N 1.47580 * 86.11645 * 222.04787 * 13 12 11 15 15 C 1.36931 * 134.49191 * 204.63866 * 14 13 12 16 16 H 1.08004 * 119.99907 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00132 * 0.02562 * 15 14 13 18 18 N 1.31611 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00038 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47435 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46884 * 120.00255 * 19 17 15 22 22 H 1.48499 * 109.47547 * 240.00236 * 19 17 15 23 23 C 1.47578 * 91.01436 * 24.64483 * 14 13 12 24 24 H 1.09008 * 109.47001 * 270.02113 * 1 2 3 25 25 H 1.08994 * 109.47441 * 30.01815 * 1 2 3 26 26 H 1.08998 * 109.46978 * 150.02112 * 1 2 3 27 27 H 1.08996 * 110.48837 * 134.93414 * 5 3 2 28 28 H 1.09006 * 110.48799 * 257.58003 * 5 3 2 29 29 H 1.08996 * 110.96664 * 217.08376 * 6 5 3 30 30 H 1.09004 * 110.96123 * 93.32200 * 6 5 3 31 31 H 0.96995 * 120.00725 * 0.02562 * 11 9 7 32 32 H 1.08999 * 112.94812 * 23.40761 * 12 11 9 33 33 H 1.08996 * 113.77105 * 336.35199 * 13 12 11 34 34 H 1.09002 * 113.76556 * 107.75132 * 13 12 11 35 35 H 0.97005 * 120.00464 * 179.97438 * 18 17 15 36 36 H 1.09004 * 113.76602 * 221.05705 * 23 14 13 37 37 H 1.09003 * 113.87496 * 89.67015 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7946 2.2443 0.0072 5 6 3.6898 0.7380 -0.0096 6 6 3.7012 -0.7487 -0.4349 7 6 2.2932 -1.2116 0.0005 8 1 2.3292 -1.6435 1.0007 9 6 1.7478 -2.2164 -0.9813 10 8 0.9882 -1.8586 -1.8564 11 7 2.1042 -3.5128 -0.8869 12 6 1.5744 -4.4895 -1.8417 13 6 0.5378 -5.4514 -1.2334 14 7 1.2194 -6.5116 -2.0011 15 6 0.8427 -7.7318 -2.4953 16 1 1.5527 -8.3362 -3.0403 17 6 -0.4517 -8.1919 -2.2959 18 7 -1.3170 -7.4551 -1.6322 19 14 -0.9657 -9.8562 -2.9707 20 1 0.1832 -10.4819 -3.6733 21 1 -1.3977 -10.7319 -1.8518 22 1 -2.0913 -9.6781 -3.9228 23 6 2.4701 -5.7285 -2.0222 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 4.2328 1.3460 -0.7331 28 1 4.1192 0.8533 0.9857 29 1 4.4754 -1.3009 0.0978 30 1 3.8274 -0.8448 -1.5134 31 1 2.7115 -3.7991 -0.1868 32 1 1.2573 -4.0367 -2.7811 33 1 0.6254 -5.5658 -0.1530 34 1 -0.4842 -5.2600 -1.5607 35 1 -2.2217 -7.7764 -1.4931 36 1 2.9911 -5.7584 -2.9792 37 1 3.1268 -5.9232 -1.1742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030828332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:53 Heat of formation + Delta-G solvation = -31.654632 kcal Electronic energy + Delta-G solvation = -20373.441426 eV Core-core repulsion = 17151.824755 eV Total energy + Delta-G solvation = -3221.616671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95496 -40.52217 -39.17923 -37.21978 -35.22348 -33.96078 -33.48369 -30.05482 -28.76335 -27.63268 -26.59520 -25.14707 -23.46122 -21.78715 -21.37838 -20.38378 -18.79842 -18.60959 -17.81780 -17.21947 -17.01539 -16.92611 -16.14532 -15.92854 -15.69660 -14.99685 -14.76698 -14.61722 -14.57963 -13.72813 -13.61454 -13.47559 -13.29595 -13.20470 -13.05682 -12.83769 -12.79553 -12.62338 -12.25004 -12.01561 -11.91172 -11.52976 -11.09507 -10.90189 -10.87305 -9.97481 -9.75522 -8.96383 -7.92705 -5.27259 1.42749 1.46513 1.47404 1.51578 1.57569 1.88153 2.24642 2.49927 3.26369 3.29929 3.37459 3.48762 3.75867 3.86260 4.04228 4.12721 4.31800 4.34951 4.42915 4.53976 4.63003 4.78493 4.81339 4.86948 4.93414 5.02629 5.10225 5.17341 5.24850 5.34413 5.49557 5.71514 5.90663 6.04319 6.59817 6.88883 7.05699 7.27509 7.58725 8.51115 9.24164 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.046908 B = 0.003759 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.768786 B = 7447.434962 C = 7860.885106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.607 5.607 3 C 0.503 3.497 4 O -0.585 6.585 5 C -0.140 4.140 6 C -0.109 4.109 7 C 0.114 3.886 8 H 0.144 0.856 9 C 0.503 3.497 10 O -0.578 6.578 11 N -0.692 5.692 12 C 0.122 3.878 13 C 0.151 3.849 14 N -0.641 5.641 15 C -0.233 4.233 16 H 0.091 0.909 17 C -0.068 4.068 18 N -0.955 5.955 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.292 1.292 22 H -0.296 1.296 23 C 0.123 3.877 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.078 0.922 31 H 0.421 0.579 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.564 11.516 7.022 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.340 5.340 3 C 0.293 3.707 4 O -0.466 6.466 5 C -0.179 4.179 6 C -0.146 4.146 7 C 0.007 3.993 8 H 0.162 0.838 9 C 0.289 3.711 10 O -0.457 6.457 11 N -0.344 5.344 12 C 0.015 3.985 13 C 0.024 3.976 14 N -0.368 5.368 15 C -0.361 4.361 16 H 0.108 0.892 17 C -0.261 4.261 18 N -0.604 5.604 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.219 1.219 22 H -0.223 1.223 23 C -0.002 4.002 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.168 0.832 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.532 12.072 6.328 19.206 hybrid contribution -1.136 -1.127 -0.149 1.607 sum 12.396 10.945 6.179 17.653 Atomic orbital electron populations 1.21599 0.78402 1.02953 1.02035 1.48090 1.06780 1.06929 1.72170 1.21839 0.91529 0.83405 0.73903 1.90687 1.80087 1.22825 1.52953 1.22420 0.90819 0.97530 1.07154 1.22746 0.93099 0.95135 1.03669 1.22005 0.92559 0.84488 1.00282 0.83842 1.21294 0.80653 0.83630 0.85502 1.90723 1.37317 1.80080 1.37627 1.45793 1.48749 1.06433 1.33420 1.23126 0.95604 0.86813 0.92925 1.22575 0.96005 0.85075 0.93942 1.46009 1.09866 1.18224 1.62693 1.19463 0.95793 0.93165 1.27664 0.89165 1.25669 0.96473 1.02478 1.01515 1.70028 1.04680 1.38978 1.46718 0.84993 0.78017 0.79022 0.77187 1.18487 1.21892 1.22285 1.23040 0.89766 0.86673 1.00738 0.91026 0.92265 0.91214 0.86712 0.84179 0.83200 0.90283 0.74126 0.89351 0.95245 0.95274 0.94345 0.91908 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.40 10.43 127.77 1.33 3.73 16 2 N -0.61 -14.16 3.00 -823.07 -2.47 -16.63 16 3 C 0.50 12.08 8.02 87.90 0.71 12.78 16 4 O -0.58 -19.52 17.60 -3.02 -0.05 -19.58 16 5 C -0.14 -1.60 6.86 30.59 0.21 -1.39 16 6 C -0.11 -0.98 6.67 31.65 0.21 -0.77 16 7 C 0.11 1.83 3.71 44.70 0.17 1.99 16 8 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 9 C 0.50 12.72 6.53 87.66 0.57 13.30 16 10 O -0.58 -21.03 14.19 -3.01 -0.04 -21.07 16 11 N -0.69 -16.24 5.36 -447.37 -2.40 -18.64 16 12 C 0.12 4.24 4.43 46.75 0.21 4.45 16 13 C 0.15 6.94 7.32 86.48 0.63 7.58 16 14 N -0.64 -31.35 3.70 -717.36 -2.65 -34.00 16 15 C -0.23 -12.68 10.70 84.03 0.90 -11.78 16 16 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 17 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 18 N -0.96 -57.79 11.38 21.65 0.25 -57.55 16 19 Si 0.98 45.16 29.55 68.60 2.03 47.18 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.12 4.25 8.69 86.48 0.75 5.00 16 24 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.06 1.68 7.93 -2.39 -0.02 1.66 16 26 H 0.07 2.08 5.98 -2.39 -0.01 2.07 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.08 0.95 7.91 -2.39 -0.02 0.93 16 31 H 0.42 6.25 8.73 -92.71 -0.81 5.44 16 32 H 0.09 3.56 7.46 -2.39 -0.02 3.54 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.03 1.60 7.15 -2.39 -0.02 1.58 16 35 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 36 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 Total: -1.00 -82.36 311.39 1.08 -81.28 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.28 Total: 7.51 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 6.15 Total: 31.51 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -7.28 Total: -126.83 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.10 Total: -40.65 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -82.36 1.08 -81.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030828332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.624 kcal (2) G-P(sol) polarization free energy of solvation -82.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds