Wall clock time and date at job start Mon Mar 30 2020 00:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99604 * 2 1 4 4 O 1.21279 * 119.99381 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00274 * 0.02562 * 3 2 1 6 6 H 1.09005 * 115.54921 * 50.36035 * 5 3 2 7 7 C 1.53008 * 117.51886 * 196.05891 * 5 3 2 8 8 C 1.52998 * 117.50245 * 264.68965 * 5 3 2 9 9 H 1.09000 * 117.50257 * 144.99950 * 8 5 3 10 10 C 1.50709 * 117.49571 * 359.97438 * 8 5 3 11 11 N 1.34773 * 119.99477 * 83.25931 * 10 8 5 12 12 O 1.21272 * 119.99777 * 263.25731 * 10 8 5 13 13 C 1.46495 * 120.00119 * 179.97438 * 2 1 3 14 14 C 1.53956 * 113.73877 * 38.74443 * 13 2 1 15 15 N 1.47813 * 86.03301 * 222.08044 * 14 13 2 16 16 C 1.36943 * 134.45733 * 204.63837 * 15 14 13 17 17 H 1.07998 * 119.99616 * 178.26652 * 16 15 14 18 18 C 1.38812 * 119.99840 * 358.27316 * 16 15 14 19 19 N 1.31627 * 119.99854 * 332.63987 * 18 16 15 20 20 Si 1.86791 * 119.99974 * 152.64349 * 18 16 15 21 21 H 1.48497 * 109.47164 * 94.49785 * 20 18 16 22 22 H 1.48509 * 109.46994 * 214.49716 * 20 18 16 23 23 H 1.48495 * 109.47165 * 334.49477 * 20 18 16 24 24 C 1.47585 * 91.05257 * 24.55140 * 15 14 13 25 25 H 1.09000 * 109.47005 * 90.00232 * 1 2 3 26 26 H 1.09001 * 109.47170 * 209.99687 * 1 2 3 27 27 H 1.08998 * 109.47298 * 329.99964 * 1 2 3 28 28 H 1.09003 * 117.49704 * 214.97173 * 7 5 3 29 29 H 1.08998 * 117.49760 * 359.97438 * 7 5 3 30 30 H 0.96997 * 120.00277 * 359.97438 * 11 10 8 31 31 H 0.97000 * 119.99655 * 179.97438 * 11 10 8 32 32 H 1.08999 * 112.94248 * 170.32987 * 13 2 1 33 33 H 1.08997 * 113.76625 * 336.34346 * 14 13 2 34 34 H 1.08996 * 113.76742 * 107.74477 * 14 13 2 35 35 H 0.96989 * 119.99852 * 180.02562 * 19 18 16 36 36 H 1.09003 * 113.76669 * 221.15082 * 24 15 14 37 37 H 1.08999 * 113.87107 * 89.76492 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.6072 2.5655 0.7582 7 6 2.1610 3.7366 -0.3748 8 6 1.1403 3.1473 -1.3504 9 1 0.2011 3.6846 -1.4817 10 6 1.6716 2.4563 -2.5799 11 7 0.9596 1.4691 -3.1587 12 8 2.7396 2.7887 -3.0485 13 6 2.1975 -1.2687 0.0006 14 6 1.5555 -2.3554 -0.8810 15 7 1.8611 -3.2878 0.2246 16 6 2.0639 -4.6394 0.3110 17 1 2.3064 -5.0892 1.2624 18 6 1.9578 -5.4311 -0.8243 19 7 1.1797 -5.0564 -1.8176 20 14 2.9192 -7.0282 -0.9423 21 1 2.0628 -8.1558 -0.4948 22 1 3.3366 -7.2519 -2.3498 23 1 4.1227 -6.9467 -0.0762 24 6 1.8620 -2.1776 1.1969 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.8931 4.6616 0.1359 29 1 3.2167 3.6247 -0.6219 30 1 0.1055 1.2031 -2.7837 31 1 1.3013 1.0246 -3.9502 32 1 3.2669 -1.1419 -0.1681 33 1 0.4887 -2.2098 -1.0507 34 1 2.1091 -2.5618 -1.7969 35 1 1.1053 -5.6097 -2.6107 36 1 2.6599 -2.2423 1.9368 37 1 0.8863 -1.9784 1.6400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043894565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:41 Heat of formation + Delta-G solvation = 18.792914 kcal Electronic energy + Delta-G solvation = -20911.360470 eV Core-core repulsion = 17691.931369 eV Total energy + Delta-G solvation = -3219.429101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58979 -39.18173 -37.77470 -35.82879 -34.50564 -33.58207 -32.04305 -27.96390 -26.76097 -25.40393 -24.95194 -24.35694 -22.41537 -20.47938 -19.47317 -18.59425 -17.78577 -17.09492 -16.88997 -16.35288 -16.06593 -15.59987 -14.88440 -14.53755 -14.11333 -13.99884 -13.84561 -13.20195 -12.96246 -12.58625 -12.29522 -12.13126 -11.82467 -11.66721 -11.21190 -11.10077 -10.91336 -10.77959 -10.70161 -10.37711 -10.19380 -10.04037 -9.69189 -9.62152 -9.55140 -8.62459 -8.22656 -7.06221 -5.93851 -3.11642 2.38790 2.69611 3.08130 3.30916 3.37267 3.45192 3.48993 3.70042 4.39177 4.45733 4.50942 4.62947 4.84378 4.98599 5.13842 5.24037 5.31996 5.34494 5.43343 5.54691 5.65965 5.76925 5.98992 6.00609 6.09279 6.37759 6.51007 6.69477 6.74630 6.95758 7.21654 7.27597 7.39253 7.66078 7.88538 8.22281 8.37204 8.91496 9.62830 10.49910 11.24239 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004854 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.362261 B = 5766.468745 C = 6085.999268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.532 3.468 4 O -0.532 6.532 5 C -0.167 4.167 6 H 0.136 0.864 7 C -0.116 4.116 8 C -0.171 4.171 9 H 0.138 0.862 10 C 0.544 3.456 11 N -0.846 5.846 12 O -0.533 6.533 13 C 0.093 3.907 14 C 0.158 3.842 15 N -0.602 5.602 16 C -0.235 4.235 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.897 3.103 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.108 3.892 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.401 0.599 31 H 0.405 0.595 32 H 0.115 0.885 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.255 0.745 36 H 0.049 0.951 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 16.302 1.853 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.319 3.681 4 O -0.408 6.408 5 C -0.189 4.189 6 H 0.153 0.847 7 C -0.154 4.154 8 C -0.192 4.192 9 H 0.155 0.845 10 C 0.328 3.672 11 N -0.409 5.409 12 O -0.409 6.409 13 C -0.010 4.010 14 C 0.032 3.968 15 N -0.329 5.329 16 C -0.362 4.362 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.726 3.274 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.019 4.019 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.229 0.771 31 H 0.236 0.764 32 H 0.133 0.867 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.512 16.292 1.558 17.269 hybrid contribution -0.350 -1.384 -0.248 1.449 sum -5.862 14.908 1.310 16.072 Atomic orbital electron populations 1.21789 0.79924 1.03174 1.01624 1.47904 1.06812 1.05894 1.71928 1.19584 0.87499 0.84304 0.76733 1.90717 1.13712 1.87036 1.49342 1.22391 1.04332 0.93695 0.98475 0.84677 1.23006 0.99091 0.95127 0.98147 1.22290 1.03542 1.04483 0.88904 0.84453 1.19556 0.84053 0.79579 0.84041 1.43787 1.25110 1.38685 1.33327 1.90759 1.21564 1.64401 1.64136 1.23916 0.97948 0.79762 0.99419 1.22529 0.97031 0.84266 0.92963 1.45995 1.81805 1.01969 1.03103 1.18901 1.41432 0.80566 0.95283 0.89870 1.24687 0.99404 0.98266 0.97199 1.70048 1.36093 1.39985 1.08541 0.86353 0.80798 0.83029 0.77213 1.21618 1.21443 1.20370 1.22950 0.98141 0.87320 0.93514 0.92876 0.90128 0.91442 0.86969 0.86507 0.77071 0.76403 0.86722 0.94308 0.92654 0.93554 0.93305 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 8.86 59.85 0.53 1.39 16 2 N -0.59 -8.89 3.09 -175.74 -0.54 -9.44 16 3 C 0.53 8.27 6.43 -10.99 -0.07 8.19 16 4 O -0.53 -10.73 15.86 5.56 0.09 -10.64 16 5 C -0.17 -1.76 4.87 -91.77 -0.45 -2.21 16 6 H 0.14 0.97 7.15 -51.93 -0.37 0.60 16 7 C -0.12 -1.22 9.56 -26.73 -0.26 -1.47 16 8 C -0.17 -1.66 6.17 -91.77 -0.57 -2.22 16 9 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.54 7.24 6.79 -10.98 -0.07 7.16 16 11 N -0.85 -8.78 8.87 31.22 0.28 -8.50 16 12 O -0.53 -9.65 17.46 5.56 0.10 -9.56 16 13 C 0.09 1.79 4.40 -70.14 -0.31 1.48 16 14 C 0.16 3.54 6.94 -2.83 -0.02 3.52 16 15 N -0.60 -15.12 3.69 -177.87 -0.66 -15.77 16 16 C -0.24 -6.54 10.55 -15.06 -0.16 -6.69 16 17 H 0.08 2.25 7.96 -52.49 -0.42 1.83 16 18 C 0.00 0.08 5.38 -17.43 -0.09 -0.02 16 19 N -0.90 -26.19 12.43 55.49 0.69 -25.50 16 20 Si 0.90 21.82 29.63 -169.99 -5.04 16.79 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.11 2.19 8.45 -2.96 -0.03 2.16 16 25 H 0.05 0.50 7.31 -51.93 -0.38 0.12 16 26 H 0.08 1.00 6.35 -51.93 -0.33 0.67 16 27 H 0.07 0.51 6.31 -51.93 -0.33 0.18 16 28 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.12 1.63 7.57 -51.93 -0.39 1.24 16 30 H 0.40 3.07 8.00 -40.82 -0.33 2.74 16 31 H 0.40 4.21 8.93 -40.82 -0.36 3.85 16 32 H 0.11 2.48 7.22 -51.93 -0.37 2.10 16 33 H 0.04 0.85 6.83 -51.93 -0.35 0.49 16 34 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.65 6.84 -51.93 -0.36 0.30 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -36.25 312.00 -6.69 -42.94 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.82 Total: 3.70 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -1.49 Total: 11.29 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.23 Total: -59.21 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.19 Total: -20.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.25 -6.69 -42.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043894565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.734 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds