Wall clock time and date at job start Mon Mar 30 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48504 * 109.47260 * 240.00279 * 3 2 1 5 5 H 1.48505 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47313 * 120.00280 * 3 2 1 7 7 C 1.38809 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00465 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00202 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47011 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46637 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99632 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00128 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99958 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.46963 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46909 * 179.97438 * 16 15 13 18 18 N 1.46498 * 109.47171 * 179.97438 * 17 16 15 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 16 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 H 0.97009 * 119.99944 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99799 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.47162 * 59.99682 * 10 9 7 26 26 H 1.09001 * 109.46509 * 300.00022 * 10 9 7 27 27 H 1.08995 * 109.47091 * 59.99770 * 11 10 9 28 28 H 1.08996 * 109.46859 * 299.99855 * 11 10 9 29 29 H 0.96998 * 120.00803 * 359.97438 * 12 11 10 30 30 H 1.08995 * 109.47531 * 59.99612 * 15 13 12 31 31 H 1.08997 * 109.46640 * 299.98999 * 15 13 12 32 32 H 1.08995 * 109.47091 * 59.99615 * 16 15 13 33 33 H 1.08996 * 109.46859 * 299.99700 * 16 15 13 34 34 H 1.09002 * 109.46649 * 59.99895 * 17 16 15 35 35 H 1.09000 * 109.47178 * 300.00172 * 17 16 15 36 36 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 37 37 H 1.08002 * 126.75518 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 7 1.7962 -6.0884 -0.0018 13 6 1.1223 -7.2556 -0.0030 14 8 -0.0905 -7.2556 -0.0030 15 6 1.8758 -8.5607 -0.0030 16 6 0.8815 -9.7236 -0.0038 17 6 1.6465 -11.0487 -0.0045 18 7 0.6945 -12.1622 -0.0046 19 6 0.6571 -13.1732 -0.9032 20 6 -0.3694 -13.9722 -0.5292 21 7 -0.9030 -13.4180 0.5652 22 7 -0.2506 -12.3465 0.8496 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 2.6847 -3.7145 0.8894 26 1 2.6846 -3.7144 -0.8906 27 1 0.4374 -4.7617 -0.8913 28 1 0.4367 -4.7621 0.8886 29 1 2.7662 -6.0885 -0.0021 30 1 2.5018 -8.6190 0.8874 31 1 2.5030 -8.6180 -0.8926 32 1 0.2552 -9.6656 -0.8939 33 1 0.2545 -9.6661 0.8860 34 1 2.2731 -11.1069 0.8856 35 1 2.2733 -11.1059 -0.8944 36 1 1.3140 -13.3141 -1.7487 37 1 -0.6943 -14.8785 -1.0185 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129169140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:42 Heat of formation + Delta-G solvation = 66.228317 kcal Electronic energy + Delta-G solvation = -18762.643782 eV Core-core repulsion = 15577.564385 eV Total energy + Delta-G solvation = -3185.079397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.51545 -39.74656 -36.35943 -35.64464 -33.88688 -32.95388 -31.33083 -31.24499 -28.69421 -27.14277 -24.11880 -23.20365 -22.81312 -21.56395 -21.39800 -20.28423 -18.14140 -17.31999 -16.98650 -16.60509 -16.12171 -15.57491 -15.31289 -14.96342 -14.62012 -14.46850 -13.85557 -13.82071 -13.23504 -13.06400 -12.76266 -12.60043 -12.26273 -11.93276 -11.48853 -11.35726 -11.15391 -11.14480 -10.86269 -10.82402 -10.43247 -10.18831 -9.95155 -9.74031 -9.69548 -9.03382 -8.88136 -7.03153 -5.82372 -3.13576 1.29445 1.98215 2.31126 2.62474 3.16352 3.40435 3.44749 3.46338 3.94740 4.19539 4.25779 4.42035 4.55654 4.67215 4.69167 4.80818 4.90525 4.91420 5.14187 5.32880 5.46585 5.49099 5.56848 5.73328 5.79545 5.88155 5.91773 6.10485 6.23536 6.42626 6.65328 6.68530 7.52986 7.62018 8.22975 8.23765 8.35101 9.46170 10.00736 10.35260 11.40024 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.077645 B = 0.002233 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.528445 B =12538.007696 C =12764.642285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.723 5.723 13 C 0.508 3.492 14 O -0.539 6.539 15 C -0.137 4.137 16 C -0.119 4.119 17 C 0.114 3.886 18 N -0.289 5.289 19 C -0.053 4.053 20 C -0.054 4.054 21 N -0.274 5.274 22 N -0.079 5.079 23 H 0.258 0.742 24 H 0.386 0.614 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.400 0.600 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.190 0.810 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -26.285 -3.193 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.375 5.375 13 C 0.294 3.706 14 O -0.416 6.416 15 C -0.178 4.178 16 C -0.158 4.158 17 C -0.007 4.007 18 N -0.083 5.083 19 C -0.204 4.204 20 C -0.212 4.212 21 N -0.140 5.140 22 N -0.059 5.059 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.234 0.766 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.207 0.793 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.885 -25.572 -1.922 26.553 hybrid contribution 1.356 0.624 -1.119 1.866 sum 8.241 -24.948 -3.040 26.449 Atomic orbital electron populations 1.69657 1.05164 1.26023 1.56959 1.24794 0.95583 0.97872 1.02583 0.86213 0.78490 0.83253 0.77854 1.21185 1.21583 1.21167 1.19140 0.90993 0.83859 1.43743 0.91076 1.42189 1.06016 0.99564 1.89724 1.20751 0.93471 0.85721 0.98365 1.21592 0.95476 0.81720 1.02610 1.45943 1.10433 1.06081 1.75012 1.20442 0.88264 0.85363 0.76575 1.90753 1.14012 1.87635 1.49202 1.21543 0.99042 0.92252 1.04927 1.21610 0.98109 0.89990 1.06063 1.22226 0.89501 0.83510 1.05465 1.47544 1.23089 1.18993 1.18638 1.23719 1.04741 0.92043 0.99874 1.23655 0.97017 1.03266 0.97232 1.75157 1.21973 1.02817 1.14065 1.78362 0.98947 1.13982 1.14624 0.93260 0.77986 0.95820 0.95861 0.91299 0.91243 0.76633 0.88255 0.88441 0.90095 0.88971 0.87969 0.87404 0.79278 0.79407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.39 5.60 -59.91 -0.34 -18.72 16 10 C 0.15 2.76 6.37 -4.04 -0.03 2.73 16 11 C 0.11 1.82 5.79 -4.04 -0.02 1.80 16 12 N -0.72 -8.84 5.56 -60.30 -0.33 -9.18 16 13 C 0.51 6.30 7.83 -10.98 -0.09 6.21 16 14 O -0.54 -9.39 15.98 5.56 0.09 -9.31 16 15 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 16 C -0.12 -0.93 4.63 -26.73 -0.12 -1.05 16 17 C 0.11 0.55 6.46 -4.04 -0.03 0.53 16 18 N -0.29 -2.42 3.44 -61.26 -0.21 -2.64 16 19 C -0.05 -0.34 11.57 -17.05 -0.20 -0.54 16 20 C -0.05 -0.45 12.05 -17.74 -0.21 -0.67 16 21 N -0.27 -3.44 12.41 30.24 0.38 -3.06 16 22 N -0.08 -0.98 12.91 60.35 0.78 -0.20 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.39 10.35 7.67 -40.82 -0.31 10.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.11 0.16 8.07 -51.93 -0.42 -0.26 16 36 H 0.19 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -37.46 325.35 -5.40 -42.86 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.27 Total: 5.11 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.10 Total: 0.55 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 1.00 Total: -61.24 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.46 -5.40 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129169140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.092 kcal (2) G-P(sol) polarization free energy of solvation -37.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds