Wall clock time and date at job start Mon Mar 30 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47231 * 2 1 4 4 C 1.34222 * 117.00186 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00385 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47326 * 173.87057 * 6 4 3 8 8 C 1.46892 * 111.00230 * 287.97571 * 7 6 4 9 9 C 1.50703 * 109.47126 * 170.00070 * 8 7 6 10 10 H 1.08000 * 119.99874 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99891 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00062 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99810 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47113 * 59.99662 * 13 11 9 15 15 H 1.48505 * 109.47041 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47252 * 299.99848 * 13 11 9 17 17 C 1.46905 * 110.99941 * 164.02293 * 7 6 4 18 18 C 1.50700 * 109.47049 * 288.24810 * 17 7 6 19 19 C 1.39874 * 125.90174 * 95.22961 * 18 17 7 20 20 C 1.35315 * 107.92078 * 179.75865 * 19 18 17 21 21 N 1.34946 * 107.74716 * 0.42327 * 20 19 18 22 22 H 0.97003 * 126.04067 * 179.83815 * 21 20 19 23 23 N 1.30842 * 125.89915 * 275.25650 * 18 17 7 24 24 H 1.09005 * 109.46882 * 59.99921 * 1 2 3 25 25 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47152 * 299.99642 * 1 2 3 27 27 H 1.09005 * 109.47166 * 240.00657 * 2 1 3 28 28 H 1.08998 * 109.47183 * 120.00309 * 2 1 3 29 29 H 1.09007 * 109.47032 * 53.87259 * 6 4 3 30 30 H 1.09001 * 109.46855 * 293.87803 * 6 4 3 31 31 H 1.08996 * 109.47336 * 290.00082 * 8 7 6 32 32 H 1.08997 * 109.47234 * 50.00106 * 8 7 6 33 33 H 0.97004 * 120.00365 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47125 * 168.24984 * 17 7 6 35 35 H 1.08997 * 109.47329 * 48.24479 * 17 7 6 36 36 H 1.08000 * 126.03302 * 0.02562 * 19 18 17 37 37 H 1.07999 * 126.12785 * 180.26725 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3805 2.8634 0.1471 8 6 5.7527 2.4670 1.5117 9 6 7.2280 2.1637 1.5620 10 1 7.8289 2.2558 0.6694 11 6 7.8104 1.7677 2.7474 12 7 7.0785 1.6551 3.8342 13 14 9.6392 1.3924 2.8098 14 1 10.4065 2.6026 2.4198 15 1 10.0155 0.9916 4.1893 16 1 9.9498 0.2853 1.8700 17 6 6.0120 4.1375 -0.2217 18 6 5.9351 4.3224 -1.7153 19 6 4.9504 5.0388 -2.4035 20 6 5.2353 4.9742 -3.7247 21 7 6.3551 4.2351 -3.8684 22 1 6.7926 4.0188 -4.7067 23 7 6.7777 3.8401 -2.5925 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.5002 3.5043 0.8307 30 1 3.6748 3.4327 -0.9393 31 1 5.5252 3.2801 2.2011 32 1 5.1893 1.5792 1.7986 33 1 7.4882 1.3761 4.6681 34 1 7.0564 4.1290 0.0900 35 1 5.4918 4.9576 0.2732 36 1 4.1132 5.5560 -1.9584 37 1 4.6668 5.4302 -4.5217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137132415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:40 Heat of formation + Delta-G solvation = -0.940995 kcal Electronic energy + Delta-G solvation = -20411.483989 eV Core-core repulsion = 17191.199161 eV Total energy + Delta-G solvation = -3220.284828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87014 -39.87882 -36.93534 -35.61248 -32.59941 -31.72114 -31.37994 -29.70970 -28.36521 -27.06924 -24.49715 -22.95489 -21.45913 -21.23979 -20.10057 -19.06839 -17.89161 -17.16222 -16.56373 -16.08261 -15.76886 -14.89129 -14.49768 -14.18825 -14.03033 -13.45849 -13.32948 -13.28827 -13.18732 -12.71053 -12.35255 -12.07130 -11.94502 -11.55505 -11.38817 -11.27191 -10.92553 -10.62579 -10.53626 -10.19759 -10.12636 -9.92692 -9.68167 -9.26762 -9.01115 -8.50784 -8.34349 -7.33697 -5.93624 -3.93169 2.14788 2.87156 2.92991 3.13530 3.17405 3.42426 3.45155 3.50493 4.51793 4.89656 5.03741 5.04316 5.04347 5.10162 5.24163 5.41811 5.42967 5.64213 5.70233 5.78812 5.84028 5.86206 5.91299 6.00222 6.01465 6.25656 6.49540 6.88608 6.92179 7.21667 7.27561 7.49474 7.83780 8.02273 8.09944 8.17223 8.41303 8.59000 9.13335 9.69763 11.17724 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.007683 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.698589 B = 3643.640566 C = 5843.732607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.455 3.545 5 O -0.471 6.471 6 C 0.063 3.937 7 N -0.515 5.515 8 C 0.194 3.806 9 C -0.501 4.501 10 H 0.066 0.934 11 C 0.056 3.944 12 N -0.901 5.901 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.138 3.862 18 C 0.094 3.906 19 C -0.274 4.274 20 C 0.047 3.953 21 N -0.487 5.487 22 H 0.434 0.566 23 N -0.268 5.268 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.104 0.896 31 H -0.006 1.006 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.144 0.856 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.162 5.562 -12.360 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.289 6.289 4 C 0.296 3.704 5 O -0.354 6.354 6 C -0.067 4.067 7 N -0.241 5.241 8 C 0.069 3.931 9 C -0.540 4.540 10 H 0.084 0.916 11 C -0.145 4.145 12 N -0.541 5.541 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.202 1.202 17 C 0.009 3.991 18 C -0.075 4.075 19 C -0.304 4.304 20 C -0.100 4.100 21 N -0.194 5.194 22 H 0.277 0.723 23 N -0.091 5.091 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.011 0.989 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.066 0.934 36 H 0.162 0.838 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.716 4.130 -12.635 16.465 hybrid contribution 0.042 0.504 0.222 0.553 sum -9.673 4.634 -12.413 16.406 Atomic orbital electron populations 1.21779 0.93142 1.02522 1.03207 1.22891 0.94791 0.81102 1.02478 1.86464 1.25608 1.31678 1.85191 1.23798 0.79859 0.93391 0.73399 1.90715 1.59791 1.42548 1.42324 1.21562 0.91875 0.89840 1.03377 1.61681 1.02625 1.28356 1.31486 1.19855 0.97546 0.95494 0.80181 1.21087 0.92847 1.44875 0.95179 0.91584 1.24949 0.98280 0.95704 0.95574 1.69947 1.35740 1.48217 1.00159 0.86555 0.85193 0.78892 0.76741 1.20237 1.21491 1.20198 1.20377 1.02902 0.90407 0.85440 1.22560 0.92776 0.95272 0.96848 1.21497 1.04802 1.11474 0.92624 1.22464 0.91223 0.97724 0.98629 1.46480 1.22054 1.42323 1.08544 0.72289 1.77497 1.23012 1.21293 0.87322 0.91785 0.90651 0.91579 0.91683 0.91341 0.91558 0.87786 0.98851 0.94199 0.92981 0.87303 0.93357 0.83821 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.23 10.22 -39.24 -0.40 -6.64 16 4 C 0.46 9.12 7.47 36.00 0.27 9.38 16 5 O -0.47 -11.38 14.98 -18.75 -0.28 -11.66 16 6 C 0.06 1.16 5.41 -4.98 -0.03 1.13 16 7 N -0.52 -11.46 4.04 -238.97 -0.96 -12.42 16 8 C 0.19 5.16 4.37 -4.98 -0.02 5.14 16 9 C -0.50 -14.56 8.29 -34.44 -0.29 -14.84 16 10 H 0.07 1.93 7.25 -52.49 -0.38 1.55 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 13 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.14 2.69 5.38 -4.97 -0.03 2.66 16 18 C 0.09 1.65 6.15 -82.40 -0.51 1.14 16 19 C -0.27 -3.73 9.51 -40.01 -0.38 -4.11 16 20 C 0.05 0.53 11.99 -17.22 -0.21 0.32 16 21 N -0.49 -6.36 7.36 30.44 0.22 -6.14 16 22 H 0.43 4.10 8.96 -182.61 -1.64 2.46 16 23 N -0.27 -4.92 12.70 33.67 0.43 -4.49 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 28 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.07 1.12 8.05 -51.92 -0.42 0.70 16 30 H 0.10 1.65 6.19 -51.93 -0.32 1.33 16 31 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 32 H 0.04 1.18 6.56 -51.93 -0.34 0.84 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.11 2.37 6.59 -51.93 -0.34 2.03 16 35 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -36.04 318.84 -7.52 -43.55 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.37 Total: -0.21 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.67 Total: 2.35 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.42 Total: -49.72 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.68 Total: -18.30 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.04 -7.52 -43.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137132415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.614 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds