Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21618 * 120.00500 * 359.97438 * 17 16 15 19 19 C 1.47424 * 120.00171 * 179.97438 * 17 16 15 20 20 C 1.36087 * 126.45146 * 179.97438 * 19 17 16 21 21 O 1.34258 * 106.95231 * 179.97438 * 20 19 17 22 22 C 1.34058 * 108.22463 * 359.97438 * 21 20 19 23 23 N 1.29937 * 109.23991 * 359.74586 * 22 21 20 24 24 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 26 26 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 27 27 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 28 28 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 29 29 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 31 31 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 32 32 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 33 33 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 34 34 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 35 35 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 36 36 H 1.08001 * 126.52351 * 0.02562 * 20 19 17 37 37 H 1.07993 * 125.37728 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6591 -0.2040 -2.6241 19 6 6.7923 0.0494 -0.6001 20 6 7.9261 -0.6471 -0.8855 21 8 8.7038 -0.5939 0.2076 22 6 8.0628 0.1199 1.1439 23 7 6.9190 0.5163 0.6717 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3122 5.0279 0.2067 30 1 0.7445 1.1534 -2.3541 31 1 0.3853 2.7441 -1.6406 32 1 1.4122 2.6307 -3.0896 33 1 3.0183 0.2298 -2.2607 34 1 3.7790 1.7183 -2.8724 35 1 4.5728 1.3525 -0.1869 36 1 8.1566 -1.1468 -1.8148 37 1 8.4397 0.3354 2.1327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152460526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = 7.229197 kcal Electronic energy + Delta-G solvation = -20950.800494 eV Core-core repulsion = 17730.869952 eV Total energy + Delta-G solvation = -3219.930542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.37712 -39.07809 -36.88544 -34.80057 -33.70355 -31.82226 -30.86604 -30.22091 -28.28569 -25.99219 -24.00401 -23.24872 -22.57689 -21.57228 -20.15446 -19.32800 -18.13923 -16.92869 -16.70420 -16.20994 -15.60546 -14.98288 -14.82405 -14.53608 -14.01673 -13.75469 -13.56074 -13.12643 -12.69198 -12.37404 -11.90526 -11.59842 -11.40841 -11.31758 -11.24115 -10.99678 -10.78101 -10.74989 -10.48005 -10.23752 -9.88410 -9.75461 -9.55860 -9.47050 -9.17541 -8.49831 -8.38877 -6.70325 -5.82727 -3.25587 1.18031 2.16135 2.68393 3.36266 3.45577 3.47656 3.60078 3.62794 4.16047 4.48535 4.87245 5.11837 5.33443 5.41709 5.52385 5.62188 5.90547 6.10073 6.13084 6.17070 6.34290 6.46460 6.52215 6.58280 6.72723 6.75895 6.80576 6.99582 7.04769 7.29826 7.46237 7.55444 7.64624 7.83352 8.15659 8.44859 8.65713 9.20441 9.82858 10.36781 11.24585 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.006836 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.574804 B = 4095.094938 C = 5043.994367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.253 4.253 5 H 0.067 0.933 6 C 0.006 3.994 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.177 3.823 13 H 0.104 0.896 14 C -0.143 4.143 15 C 0.099 3.901 16 N -0.681 5.681 17 C 0.588 3.412 18 O -0.558 6.558 19 C -0.063 4.063 20 C 0.002 3.998 21 O -0.205 6.205 22 C 0.172 3.828 23 N -0.456 5.456 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.253 0.747 30 H 0.029 0.971 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.420 0.580 36 H 0.228 0.772 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 -6.976 -0.738 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.383 4.383 5 H 0.084 0.916 6 C -0.193 4.193 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.220 1.220 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.026 4.026 16 N -0.330 5.330 17 C 0.372 3.628 18 O -0.439 6.439 19 C -0.183 4.183 20 C -0.072 4.072 21 O -0.090 6.090 22 C -0.057 4.057 23 N -0.185 5.185 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.259 0.741 36 H 0.244 0.756 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.620 -6.746 -1.185 11.809 hybrid contribution 0.609 0.447 0.902 1.176 sum 10.229 -6.300 -0.283 12.016 Atomic orbital electron populations 1.22395 0.99768 0.98326 1.02103 1.20786 0.91913 0.87595 0.98109 1.44001 1.73732 1.09734 1.02969 1.19194 1.42568 0.89263 0.87270 0.91570 1.25019 0.98979 0.97830 0.97442 1.70021 1.43114 1.08410 1.32292 0.86313 0.78385 0.80197 0.82438 1.20185 1.21634 1.21957 1.20528 0.90882 0.96688 0.85002 0.87866 1.22117 1.00535 0.99551 0.97994 1.22224 0.87041 1.00710 0.92660 1.45824 1.16441 1.51308 1.19439 1.16828 0.81438 0.79351 0.85137 1.90770 1.81180 1.52266 1.19659 1.22016 0.98420 1.04634 0.93189 1.25239 0.89808 1.01137 0.90968 1.84417 1.44930 1.57985 1.21704 1.28158 0.88217 0.93179 0.96153 1.70881 1.18048 1.21339 1.08201 0.95380 0.92890 0.93142 0.94505 0.94587 0.93735 0.95148 0.90041 0.95143 0.92588 0.92463 0.74148 0.75562 0.73096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 10.02 37.16 0.37 -2.90 16 2 C 0.14 2.94 5.73 -4.04 -0.02 2.92 16 3 N -0.58 -13.40 1.84 -165.67 -0.30 -13.70 16 4 C -0.25 -6.46 9.50 -15.06 -0.14 -6.61 16 5 H 0.07 1.72 7.90 -52.49 -0.41 1.30 16 6 C 0.01 0.17 4.84 -17.43 -0.08 0.08 16 7 N -0.89 -24.05 10.24 55.49 0.57 -23.48 16 8 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.18 3.87 1.93 -67.93 -0.13 3.74 16 13 H 0.10 2.58 5.93 -51.93 -0.31 2.28 16 14 C -0.14 -2.97 8.25 37.16 0.31 -2.67 16 15 C 0.10 1.96 4.85 -4.04 -0.02 1.94 16 16 N -0.68 -13.37 5.38 -61.38 -0.33 -13.70 16 17 C 0.59 11.03 7.81 -12.52 -0.10 10.93 16 18 O -0.56 -11.37 16.89 5.26 0.09 -11.28 16 19 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 20 C 0.00 0.03 11.94 29.96 0.36 0.39 16 21 O -0.20 -2.24 10.73 6.49 0.07 -2.17 16 22 C 0.17 1.85 13.19 51.96 0.69 2.54 16 23 N -0.46 -7.00 11.06 -11.48 -0.13 -7.13 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 1.01 6.03 -51.93 -0.31 0.70 16 27 H 0.04 0.73 6.35 -51.93 -0.33 0.40 16 28 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.03 0.59 6.50 -51.93 -0.34 0.25 16 31 H 0.08 1.93 7.22 -51.93 -0.37 1.56 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.11 6.76 -51.93 -0.35 0.76 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.42 8.77 7.81 -40.82 -0.32 8.45 16 36 H 0.23 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.25 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -29.93 311.70 -4.57 -34.49 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.84 Total: 7.58 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.64 Total: 8.79 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.19 Total: -58.01 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.16 Total: -13.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.93 -4.57 -34.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152460526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.723 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds