Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21618 * 120.00500 * 359.97438 * 17 16 15 19 19 C 1.47424 * 120.00171 * 179.97438 * 17 16 15 20 20 C 1.36087 * 126.45146 * 179.97438 * 19 17 16 21 21 O 1.34258 * 106.95231 * 179.97438 * 20 19 17 22 22 C 1.34058 * 108.22463 * 359.97438 * 21 20 19 23 23 N 1.29937 * 109.23991 * 359.74586 * 22 21 20 24 24 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 26 26 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 27 27 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 28 28 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 29 29 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 31 31 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 32 32 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 33 33 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 34 34 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 35 35 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 36 36 H 1.08001 * 126.52351 * 0.02562 * 20 19 17 37 37 H 1.07993 * 125.37728 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6591 -0.2040 -2.6241 19 6 6.7923 0.0494 -0.6001 20 6 7.9261 -0.6471 -0.8855 21 8 8.7038 -0.5939 0.2076 22 6 8.0628 0.1199 1.1439 23 7 6.9190 0.5163 0.6717 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3122 5.0279 0.2067 30 1 0.7445 1.1534 -2.3541 31 1 0.3853 2.7441 -1.6406 32 1 1.4122 2.6307 -3.0896 33 1 3.0183 0.2298 -2.2607 34 1 3.7790 1.7183 -2.8724 35 1 4.5728 1.3525 -0.1869 36 1 8.1566 -1.1468 -1.8148 37 1 8.4397 0.3354 2.1327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152460526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = -15.000036 kcal Electronic energy + Delta-G solvation = -20951.764426 eV Core-core repulsion = 17730.869952 eV Total energy + Delta-G solvation = -3220.894473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.33482 -40.56101 -38.60875 -35.85577 -35.28364 -33.72477 -32.47641 -31.30662 -30.10188 -27.49456 -25.86160 -24.51271 -23.54530 -23.25768 -21.44595 -21.04736 -19.44229 -18.66239 -17.67610 -17.42209 -17.07202 -16.54648 -16.43219 -15.83218 -15.66060 -15.30911 -14.94169 -14.48024 -14.34152 -14.04931 -13.67105 -13.28335 -13.09530 -13.00703 -12.82459 -12.63125 -12.37652 -12.20716 -12.06835 -11.77485 -11.73641 -11.29946 -11.26628 -11.21803 -10.44546 -10.25001 -9.89456 -8.59503 -7.80954 -5.24354 0.15528 1.13238 1.48055 1.53137 1.60995 1.78877 2.29166 2.31382 2.56455 3.20032 3.34178 3.64112 3.89782 3.94440 4.23422 4.44754 4.51602 4.57089 4.68425 4.72903 4.82947 4.89485 4.89988 5.03280 5.08841 5.16839 5.21558 5.33013 5.46712 5.60160 5.75082 5.76213 5.92358 6.42607 6.49763 6.72124 7.16070 7.25320 7.94302 8.43278 9.23971 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.006836 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.574804 B = 4095.094938 C = 5043.994367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.253 4.253 5 H 0.059 0.941 6 C -0.036 4.036 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.294 1.294 11 H -0.299 1.299 12 C 0.182 3.818 13 H 0.071 0.929 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.689 5.689 17 C 0.588 3.412 18 O -0.581 6.581 19 C -0.107 4.107 20 C 0.032 3.968 21 O -0.195 6.195 22 C 0.197 3.803 23 N -0.506 5.506 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.247 0.753 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.414 0.586 36 H 0.255 0.745 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -8.279 -0.321 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.077 0.923 6 C -0.233 4.233 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.221 1.221 11 H -0.227 1.227 12 C 0.075 3.925 13 H 0.089 0.911 14 C -0.191 4.191 15 C -0.014 4.014 16 N -0.337 5.337 17 C 0.375 3.625 18 O -0.463 6.463 19 C -0.225 4.225 20 C -0.042 4.042 21 O -0.080 6.080 22 C -0.032 4.032 23 N -0.234 5.234 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.271 0.729 37 H 0.316 0.684 Dipole moment (debyes) X Y Z Total from point charges 11.216 -8.069 -0.769 13.838 hybrid contribution 0.194 0.781 0.807 1.140 sum 11.410 -7.288 0.038 13.539 Atomic orbital electron populations 1.22254 0.98755 0.99907 1.00594 1.20853 0.92621 0.86320 0.98591 1.44083 1.74130 1.10375 1.02644 1.19300 1.41617 0.89538 0.87918 0.92290 1.25547 0.99697 0.98611 0.99395 1.70147 1.44263 1.08002 1.33594 0.85466 0.77339 0.78824 0.80325 1.19471 1.22134 1.22652 1.20374 0.91718 0.95421 0.85020 0.91084 1.21949 0.99193 0.99856 0.98071 1.21982 0.86749 1.00236 0.92475 1.45826 1.16896 1.51984 1.18972 1.17179 0.81746 0.78304 0.85298 1.90738 1.81777 1.53083 1.20684 1.21736 0.98956 1.07932 0.93865 1.25682 0.88210 0.98675 0.91683 1.84481 1.44393 1.57751 1.21422 1.29177 0.86576 0.90500 0.96940 1.70817 1.20595 1.23531 1.08498 0.92216 0.95180 0.93761 0.93315 0.94727 0.94370 0.93791 0.93102 0.93507 0.92379 0.92090 0.74962 0.72883 0.68424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 10.02 71.98 0.72 -5.23 16 2 C 0.14 5.76 5.73 86.38 0.49 6.25 16 3 N -0.59 -27.28 1.84 -678.05 -1.25 -28.53 16 4 C -0.25 -13.06 9.50 84.03 0.80 -12.26 16 5 H 0.06 3.08 7.90 -2.91 -0.02 3.06 16 6 C -0.04 -1.88 4.84 84.86 0.41 -1.47 16 7 N -0.91 -50.27 10.24 21.65 0.22 -50.05 16 8 Si 0.95 43.62 29.59 68.60 2.03 45.65 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 12 C 0.18 8.06 1.93 44.99 0.09 8.14 16 13 H 0.07 3.65 5.93 -2.39 -0.01 3.64 16 14 C -0.13 -5.47 8.25 71.98 0.59 -4.88 16 15 C 0.11 4.38 4.85 86.38 0.42 4.80 16 16 N -0.69 -27.18 5.38 -466.36 -2.51 -29.69 16 17 C 0.59 21.89 7.81 86.66 0.68 22.57 16 18 O -0.58 -23.33 16.89 -4.09 -0.07 -23.40 16 19 C -0.11 -3.28 6.99 40.41 0.28 -3.00 16 20 C 0.03 0.71 11.94 67.32 0.80 1.51 16 21 O -0.20 -3.62 10.73 0.30 0.00 -3.61 16 22 C 0.20 3.63 13.19 130.52 1.72 5.36 16 23 N -0.51 -14.81 11.06 -305.14 -3.37 -18.19 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.73 6.03 -2.39 -0.01 1.71 16 27 H 0.05 1.86 6.35 -2.39 -0.02 1.84 16 28 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 29 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.04 1.67 6.50 -2.39 -0.02 1.66 16 31 H 0.05 2.44 7.22 -2.39 -0.02 2.42 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 2.26 6.76 -2.38 -0.02 2.25 16 34 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.41 17.54 7.81 -92.71 -0.72 16.81 16 36 H 0.26 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.30 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -65.47 311.70 2.43 -63.04 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.37 Total: 22.99 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 7.01 Total: 21.80 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -6.91 Total: -126.46 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.07 Total: -27.01 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -65.47 2.43 -63.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152460526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.038 kcal (2) G-P(sol) polarization free energy of solvation -65.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds