Wall clock time and date at job start Mon Mar 30 2020 01:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00041 * 2 1 4 4 C 1.53003 * 109.47047 * 202.94378 * 3 2 1 5 5 N 1.46503 * 109.47289 * 299.99683 * 4 3 2 6 6 C 1.46492 * 120.00190 * 270.00427 * 5 4 3 7 7 C 1.38832 * 119.99773 * 89.99777 * 5 4 3 8 8 C 1.39967 * 119.96922 * 5.03079 * 7 5 4 9 9 N 1.32121 * 120.31857 * 180.02562 * 8 7 5 10 10 C 1.31930 * 120.27110 * 359.68060 * 9 8 7 11 11 C 1.40686 * 119.93453 * 0.54762 * 10 9 8 12 12 C 1.41263 * 120.15647 * 179.75624 * 11 10 9 13 13 H 1.08003 * 120.00576 * 5.50180 * 12 11 10 14 14 C 1.40056 * 119.99788 * 185.23274 * 12 11 10 15 15 N 1.30728 * 120.00123 * 354.43860 * 14 12 11 16 16 Si 1.86807 * 119.99821 * 174.44336 * 14 12 11 17 17 H 1.48502 * 109.47224 * 60.00164 * 16 14 12 18 18 H 1.48507 * 109.46654 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47239 * 299.99500 * 16 14 12 20 20 N 1.32230 * 119.97251 * 185.00146 * 7 5 4 21 21 O 1.42899 * 109.47183 * 82.94238 * 3 2 1 22 22 C 1.42892 * 113.99885 * 285.47956 * 21 3 2 23 23 H 1.09011 * 109.46678 * 305.62313 * 1 2 3 24 24 H 1.09001 * 109.47468 * 65.62327 * 1 2 3 25 25 H 1.08999 * 109.47407 * 185.62998 * 1 2 3 26 26 H 1.08999 * 109.47220 * 322.93875 * 3 2 1 27 27 H 1.09004 * 109.47236 * 180.02562 * 4 3 2 28 28 H 1.08995 * 109.47213 * 60.00150 * 4 3 2 29 29 H 1.09003 * 109.47423 * 269.99613 * 6 5 4 30 30 H 1.08999 * 109.47736 * 30.00027 * 6 5 4 31 31 H 1.09007 * 109.47376 * 149.99848 * 6 5 4 32 32 H 1.08003 * 119.84006 * 359.97438 * 8 7 5 33 33 H 1.08004 * 120.03810 * 180.30211 * 10 9 8 34 34 H 0.97002 * 120.00246 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47377 * 77.11383 * 22 21 3 36 36 H 1.09002 * 109.47057 * 197.10894 * 22 21 3 37 37 H 1.09002 * 109.47208 * 317.10394 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4312 1.2310 -0.5623 5 7 4.2396 0.3366 0.2700 6 6 4.9828 0.8723 1.4131 7 6 4.3012 -1.0187 -0.0245 8 6 3.6775 -1.5131 -1.1759 9 7 3.7313 -2.8017 -1.4625 10 6 4.3790 -3.6331 -0.6688 11 6 5.0058 -3.1489 0.4939 12 6 5.6962 -4.0357 1.3497 13 1 5.8203 -5.0710 1.0683 14 6 6.2247 -3.5710 2.5607 15 7 6.1751 -2.2970 2.8495 16 14 7.0005 -4.7719 3.7631 17 1 8.1460 -5.4553 3.1104 18 1 7.4810 -4.0340 4.9589 19 1 5.9918 -5.7806 4.1755 20 7 4.9494 -1.8413 0.7827 21 8 2.0527 1.8079 1.3371 22 6 0.7828 2.2258 1.8415 23 1 -0.3633 0.5986 0.8355 24 1 -0.3634 0.4241 -0.9360 25 1 -0.3634 -1.0227 0.1008 26 1 1.4088 1.9709 -0.6193 27 1 3.8747 2.2267 -0.5619 28 1 3.3987 0.8478 -1.5822 29 1 5.9791 1.1740 1.0896 30 1 4.4550 1.7361 1.8173 31 1 5.0676 0.1054 2.1831 32 1 3.1491 -0.8380 -1.8327 33 1 4.4248 -4.6850 -0.9094 34 1 6.5415 -1.9751 3.6880 35 1 0.1978 1.3504 2.1233 36 1 0.9300 2.8610 2.7151 37 1 0.2520 2.7851 1.0711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167032088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:53 Heat of formation + Delta-G solvation = -23.275356 kcal Electronic energy + Delta-G solvation = -21311.603897 eV Core-core repulsion = 18090.350579 eV Total energy + Delta-G solvation = -3221.253318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31181 -38.52402 -35.72347 -35.61764 -33.76632 -31.59475 -29.94052 -29.04086 -27.07165 -25.95902 -25.81805 -24.51297 -22.47768 -21.71912 -20.07808 -17.58526 -17.25700 -16.90244 -15.94989 -15.82493 -15.19192 -14.78211 -14.64542 -14.18591 -13.89669 -13.57467 -13.40149 -13.06358 -12.96336 -12.34301 -12.10781 -11.91338 -11.58837 -11.38018 -11.26660 -11.20585 -10.94518 -10.74523 -10.55508 -10.26531 -9.77985 -9.63003 -9.58527 -9.31941 -9.16327 -8.12320 -7.19891 -6.39299 -6.29274 -4.49422 2.85953 3.10759 3.13318 3.24402 3.44175 3.68502 3.97431 3.98737 4.10231 4.85291 4.86626 5.12423 5.13375 5.36622 5.38564 5.42223 5.52151 5.66666 5.80941 5.86083 6.07789 6.18945 6.31152 6.55002 6.57626 6.61626 6.89510 7.11653 7.17164 7.22181 7.31897 7.37317 7.79546 7.97152 8.27996 8.40929 8.72678 9.01229 9.59661 10.17782 10.33840 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.006319 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.396246 B = 4430.083620 C = 4929.443364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.363 6.363 3 C 0.221 3.779 4 C 0.151 3.849 5 N -0.602 5.602 6 C 0.111 3.889 7 C 0.382 3.618 8 C -0.144 4.144 9 N -0.411 5.411 10 C -0.114 4.114 11 C 0.247 3.753 12 C -0.422 4.422 13 H 0.087 0.913 14 C 0.071 3.929 15 N -0.711 5.711 16 Si 0.908 3.092 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.265 1.265 20 N -0.502 5.502 21 O -0.381 6.381 22 C 0.024 3.976 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.025 0.975 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.272 0.728 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 9.707 -0.751 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.282 6.282 3 C 0.123 3.877 4 C 0.025 3.975 5 N -0.319 5.319 6 C -0.032 4.032 7 C 0.140 3.860 8 C -0.307 4.307 9 N -0.123 5.123 10 C -0.283 4.283 11 C 0.118 3.882 12 C -0.455 4.455 13 H 0.105 0.895 14 C -0.155 4.155 15 N -0.333 5.333 16 Si 0.732 3.268 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.190 1.190 20 N -0.228 5.228 21 O -0.301 6.301 22 C -0.072 4.072 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.865 9.860 -0.472 12.024 hybrid contribution -0.378 -0.182 0.569 0.707 sum -7.243 9.678 0.097 12.089 Atomic orbital electron populations 1.23063 0.82486 1.03163 0.99381 1.88354 1.18380 1.28012 1.93431 1.24299 0.96844 0.83073 0.83475 1.21331 0.86192 0.94924 0.95027 1.45614 1.51252 1.03750 1.31275 1.21420 0.92955 0.99257 0.89616 1.19377 0.90970 0.85225 0.90392 1.21839 1.15118 0.92776 1.00929 1.67495 1.12264 1.03080 1.29455 1.22830 1.08895 0.98389 0.98201 1.19073 0.89784 0.88812 0.90482 1.19509 1.28541 0.96329 1.01144 0.89535 1.26069 0.95094 0.95461 0.98885 1.70086 1.28620 1.13953 1.20610 0.86386 0.80010 0.80944 0.79431 1.18946 1.20333 1.18959 1.69004 1.22892 1.02539 1.28401 1.88124 1.29186 1.81016 1.31778 1.22944 0.86543 0.98759 0.98997 0.93809 0.94433 0.89731 0.93138 0.89513 0.88743 0.95655 0.93346 0.88791 0.86450 0.85657 0.91673 0.93530 0.90099 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.69 101.05 1.08 1.29 16 2 O -0.36 -6.60 8.79 -59.04 -0.52 -7.12 16 3 C 0.22 3.38 3.16 37.16 0.12 3.50 16 4 C 0.15 2.44 5.49 -4.04 -0.02 2.42 16 5 N -0.60 -12.74 2.85 -181.55 -0.52 -13.25 16 6 C 0.11 2.26 10.24 59.84 0.61 2.87 16 7 C 0.38 9.72 6.94 -155.02 -1.08 8.64 16 8 C -0.14 -3.60 9.38 -16.78 -0.16 -3.76 16 9 N -0.41 -10.93 10.47 -12.11 -0.13 -11.06 16 10 C -0.11 -3.09 10.97 -16.59 -0.18 -3.28 16 11 C 0.25 7.03 6.54 -84.84 -0.55 6.48 16 12 C -0.42 -11.43 9.15 -37.75 -0.35 -11.77 16 13 H 0.09 2.17 7.85 -52.48 -0.41 1.76 16 14 C 0.07 1.80 5.49 -17.34 -0.10 1.71 16 15 N -0.71 -18.73 11.41 55.55 0.63 -18.09 16 16 Si 0.91 18.66 29.56 -169.99 -5.03 13.64 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 N -0.50 -14.18 6.80 -10.14 -0.07 -14.25 16 21 O -0.38 -6.06 9.23 -59.04 -0.54 -6.61 16 22 C 0.02 0.28 9.80 101.05 0.99 1.27 16 23 H 0.04 0.52 4.57 -51.92 -0.24 0.28 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.61 7.58 -51.93 -0.39 0.22 16 27 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.09 1.47 5.98 -51.93 -0.31 1.16 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.87 7.06 -51.93 -0.37 0.50 16 31 H 0.09 2.24 7.22 -51.92 -0.37 1.87 16 32 H 0.12 2.62 5.88 -52.48 -0.31 2.32 16 33 H 0.13 3.11 8.06 -52.48 -0.42 2.69 16 34 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 35 H 0.05 0.57 6.06 -51.93 -0.31 0.25 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.35 7.78 -51.93 -0.40 -0.05 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -32.83 305.25 -5.99 -38.82 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.79 Total: 3.95 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 0.37 Total: 9.37 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.08 Total: -56.65 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.06 Total: -13.73 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.83 -5.99 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167032088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.547 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds