Wall clock time and date at job start Mon Mar 30 2020 01:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35871 * 127.01385 * 2 1 4 4 N 1.40548 * 126.78999 * 359.95527 * 3 2 1 5 5 C 1.34781 * 119.99715 * 180.02562 * 4 3 2 6 6 O 1.21594 * 119.99926 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99873 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00125 * 359.97438 * 7 5 4 9 9 C 1.46500 * 120.00163 * 179.97438 * 7 5 4 10 10 H 1.09001 * 109.46596 * 0.02562 * 9 7 5 11 11 C 1.53006 * 109.47249 * 119.99832 * 9 7 5 12 12 C 1.50698 * 109.47583 * 240.00268 * 9 7 5 13 13 H 1.08004 * 119.99528 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00356 * 180.02562 * 12 9 7 15 15 N 1.31518 * 119.99554 * 359.97438 * 14 12 9 16 16 Si 1.86790 * 120.00086 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47385 * 59.99525 * 16 14 12 18 18 H 1.48500 * 109.47279 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47348 * 299.99599 * 16 14 12 20 20 N 1.34018 * 106.41705 * 180.22145 * 3 2 1 21 21 N 1.28600 * 109.05167 * 359.59574 * 20 3 2 22 22 N 1.28706 * 110.36678 * 0.41764 * 21 20 3 23 23 C 1.46504 * 125.90560 * 179.72423 * 22 21 20 24 24 H 1.08996 * 109.47386 * 90.00072 * 1 2 3 25 25 H 1.09001 * 109.47109 * 210.00848 * 1 2 3 26 26 H 1.09003 * 109.46616 * 330.00268 * 1 2 3 27 27 H 0.96997 * 120.00033 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47565 * 270.00429 * 8 7 5 29 29 H 1.09007 * 109.46761 * 30.00462 * 8 7 5 30 30 H 1.09006 * 109.47241 * 149.99970 * 8 7 5 31 31 H 1.09001 * 109.47002 * 60.00085 * 11 9 7 32 32 H 1.08993 * 109.46955 * 180.02562 * 11 9 7 33 33 H 1.09000 * 109.47050 * 300.00351 * 11 9 7 34 34 H 0.97005 * 119.99198 * 180.02562 * 15 14 12 35 35 H 1.08990 * 109.47088 * 270.02492 * 23 22 21 36 36 H 1.09000 * 109.47186 * 30.02465 * 23 22 21 37 37 H 1.08997 * 109.46870 * 150.01991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3250 1.0849 0.0000 4 7 1.9330 2.4346 -0.0009 5 6 2.8660 3.4073 -0.0013 6 8 4.0468 3.1171 -0.0004 7 7 2.4901 4.7015 -0.0026 8 6 1.0674 5.0511 -0.0043 9 6 3.5042 5.7588 -0.0025 10 1 4.4973 5.3096 -0.0017 11 6 3.3379 6.6252 -1.2526 12 6 3.3381 6.6141 1.2271 13 1 2.5552 6.3924 1.9373 14 6 4.1850 7.6801 1.4450 15 7 5.1381 7.9502 0.5799 16 14 3.9787 8.7405 2.9688 17 1 4.1402 7.9001 4.1824 18 1 5.0067 9.8122 2.9690 19 1 2.6255 9.3521 2.9668 20 7 3.5795 0.6135 -0.0050 21 7 3.5449 -0.6721 0.0007 22 7 2.3267 -1.0873 0.0005 23 6 1.8963 -2.4877 0.0003 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5140 26 1 -0.3633 0.8901 0.5138 27 1 0.9910 2.6661 -0.0012 28 1 0.7155 5.1370 -1.0322 29 1 0.5017 4.2739 0.5098 30 1 0.9265 6.0026 0.5087 31 1 2.3447 7.0743 -1.2539 32 1 4.0926 7.4115 -1.2527 33 1 3.4580 6.0066 -2.1420 34 1 5.7341 8.6999 0.7334 35 1 1.7902 -2.8351 -1.0273 36 1 2.6400 -3.0965 0.5146 37 1 0.9386 -2.5736 0.5137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206296323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:28 Heat of formation + Delta-G solvation = 61.348222 kcal Electronic energy + Delta-G solvation = -20597.816151 eV Core-core repulsion = 17412.525138 eV Total energy + Delta-G solvation = -3185.291013 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.20443 -41.10883 -37.40994 -36.25911 -35.46858 -34.68071 -32.73794 -30.99208 -28.72118 -27.95794 -27.55674 -27.26999 -24.48626 -22.46779 -22.24585 -20.49160 -19.19200 -18.63383 -18.18089 -17.75704 -17.09787 -16.60135 -16.35204 -15.93399 -15.10005 -14.82594 -14.49050 -14.26381 -14.01735 -13.93851 -13.76709 -13.51273 -13.15773 -13.10153 -12.87597 -12.72483 -12.68641 -12.60106 -12.20439 -12.10790 -12.05773 -11.75097 -11.18981 -10.96452 -10.70475 -10.49021 -9.50742 -9.04837 -8.11241 -6.28095 0.55472 1.29993 1.41175 1.43746 1.46908 1.53949 1.82979 2.39145 2.47923 2.99843 3.16642 3.53668 3.81286 3.83350 4.23336 4.36616 4.39966 4.60601 4.67348 4.73975 4.76486 4.80764 4.92532 4.99256 5.02410 5.08999 5.12112 5.45164 5.54473 5.57071 5.69265 5.74881 5.97017 6.17684 6.22785 6.79408 7.05061 7.38644 7.56184 7.73942 8.93209 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.034309 B = 0.004354 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.924626 B = 6429.412076 C = 6552.902910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.035 4.035 3 C 0.204 3.796 4 N -0.635 5.635 5 C 0.685 3.315 6 O -0.610 6.610 7 N -0.611 5.611 8 C 0.078 3.922 9 C 0.278 3.722 10 H 0.004 0.996 11 C -0.130 4.130 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.968 3.032 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.258 1.258 20 N -0.311 5.311 21 N -0.116 5.116 22 N -0.279 5.279 23 C 0.070 3.930 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.430 0.570 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.264 0.736 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.177 -17.651 -1.573 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.172 4.172 3 C -0.029 4.029 4 N -0.292 5.292 5 C 0.386 3.614 6 O -0.487 6.487 7 N -0.346 5.346 8 C -0.064 4.064 9 C 0.176 3.824 10 H 0.022 0.978 11 C -0.189 4.189 12 C -0.577 4.577 13 H 0.082 0.918 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.793 3.207 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.182 1.182 20 N -0.180 5.180 21 N -0.095 5.095 22 N -0.076 5.076 23 C -0.069 4.069 24 H 0.119 0.881 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.272 0.728 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.690 -18.078 -1.619 24.658 hybrid contribution -0.600 1.097 0.635 1.403 sum -17.290 -16.981 -0.984 24.254 Atomic orbital electron populations 1.20534 0.81106 1.06104 1.05244 1.22030 0.97529 0.84224 1.13381 1.18674 0.90449 0.85982 1.07813 1.41742 1.09799 0.99918 1.77737 1.16211 0.84709 0.81760 0.78738 1.90957 1.17916 1.82000 1.57842 1.47420 1.09217 1.02878 1.75067 1.21862 0.79087 1.02979 1.02502 1.18460 0.86040 0.83248 0.94662 0.97847 1.21869 1.01695 1.00049 0.95241 1.21563 1.16533 1.12582 1.07011 0.91799 1.25771 0.94476 0.98669 0.99703 1.70040 1.18747 1.29823 1.37156 0.85467 0.78490 0.77840 0.78921 1.20583 1.21013 1.18203 1.75442 1.21325 1.01039 1.20169 1.78252 1.03600 1.05576 1.22040 1.47621 1.03837 1.10183 1.45976 1.22795 1.04369 0.72817 1.06903 0.88137 0.87440 0.88779 0.72812 0.91256 0.89603 0.90436 0.92947 0.91330 0.96492 0.92668 0.87050 0.87541 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.04 71.24 0.72 0.12 16 2 C -0.04 -0.79 7.05 41.34 0.29 -0.50 16 3 C 0.20 7.19 7.76 131.28 1.02 8.21 16 4 N -0.63 -21.87 5.33 -322.49 -1.72 -23.59 16 5 C 0.69 32.34 8.25 179.06 1.48 33.82 16 6 O -0.61 -36.43 14.44 -4.01 -0.06 -36.48 16 7 N -0.61 -27.30 2.75 -844.82 -2.33 -29.63 16 8 C 0.08 2.37 9.20 127.77 1.18 3.55 16 9 C 0.28 15.25 2.64 44.25 0.12 15.37 16 10 H 0.00 0.24 6.90 -2.39 -0.02 0.22 16 11 C -0.13 -6.50 8.97 71.98 0.65 -5.86 16 12 C -0.54 -30.08 7.99 25.60 0.20 -29.88 16 13 H 0.06 3.41 7.33 -2.91 -0.02 3.39 16 14 C 0.01 0.74 5.30 84.65 0.45 1.19 16 15 N -0.92 -54.67 11.32 21.45 0.24 -54.43 16 16 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 N -0.31 -13.83 10.72 -55.52 -0.60 -14.43 16 21 N -0.12 -4.12 13.15 37.02 0.49 -3.64 16 22 N -0.28 -6.38 3.77 -354.66 -1.34 -7.72 16 23 C 0.07 0.55 11.23 127.77 1.44 1.99 16 24 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.11 0.22 7.20 -2.39 -0.02 0.20 16 26 H 0.09 0.64 7.76 -2.39 -0.02 0.62 16 27 H 0.43 10.05 6.02 -92.71 -0.56 9.50 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.87 6.36 -2.38 -0.02 1.85 16 30 H 0.08 2.53 7.02 -2.38 -0.02 2.51 16 31 H 0.05 2.32 7.67 -2.39 -0.02 2.30 16 32 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.14 0.02 7.16 -2.39 -0.02 0.00 16 Total: -1.00 -92.21 309.27 4.79 -87.42 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.54 Total: 8.53 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 7.53 Total: 28.01 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -5.25 Total: -133.44 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.06 Total: -36.48 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -92.21 4.79 -87.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206296323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.771 kcal (2) G-P(sol) polarization free energy of solvation -92.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds