Wall clock time and date at job start Mon Mar 30 2020 00:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47002 * 2 1 4 4 C 1.34881 * 116.99817 * 179.97438 * 3 2 1 5 5 O 1.21610 * 119.99571 * 0.02562 * 4 3 2 6 6 C 1.46587 * 120.00026 * 179.97438 * 4 3 2 7 7 N 1.38190 * 126.85335 * 0.27732 * 6 4 3 8 8 H 0.97000 * 126.48372 * 0.04420 * 7 6 4 9 9 C 1.34469 * 107.04950 * 180.14294 * 7 6 4 10 10 N 1.30883 * 109.17842 * 359.61603 * 9 7 6 11 11 C 1.33270 * 109.70448 * 0.24511 * 10 9 7 12 12 C 1.50707 * 126.11334 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46726 * 89.97331 * 12 11 10 14 14 C 1.46901 * 110.99781 * 66.05168 * 13 12 11 15 15 C 1.46902 * 110.99766 * 190.00100 * 13 12 11 16 16 C 1.50697 * 109.47281 * 170.00327 * 15 13 12 17 17 H 1.07994 * 119.99775 * 359.97438 * 16 15 13 18 18 C 1.37879 * 120.00220 * 180.02562 * 16 15 13 19 19 N 1.31509 * 120.00069 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99729 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47143 * 90.00118 * 20 18 16 22 22 H 1.48502 * 109.46693 * 210.00000 * 20 18 16 23 23 H 1.48500 * 109.47057 * 329.99780 * 20 18 16 24 24 H 1.09001 * 109.46959 * 60.00065 * 1 2 3 25 25 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47172 * 299.99750 * 1 2 3 27 27 H 1.08996 * 109.47356 * 239.99502 * 2 1 3 28 28 H 1.09001 * 109.46959 * 119.99935 * 2 1 3 29 29 H 1.08002 * 125.41411 * 179.88767 * 9 7 6 30 30 H 1.09001 * 109.47084 * 209.97242 * 12 11 10 31 31 H 1.09000 * 109.46828 * 329.97414 * 12 11 10 32 32 H 1.09002 * 109.47302 * 59.99859 * 14 13 12 33 33 H 1.09000 * 109.46586 * 179.97438 * 14 13 12 34 34 H 1.08996 * 109.47241 * 299.99090 * 14 13 12 35 35 H 1.09001 * 109.46947 * 290.00206 * 15 13 12 36 36 H 1.09002 * 109.47014 * 50.00077 * 15 13 12 37 37 H 0.96997 * 120.00059 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3512 1.5457 0.0005 5 8 4.0919 0.5812 0.0005 6 6 3.9115 2.9002 0.0000 7 7 3.2065 4.0888 0.0043 8 1 2.2415 4.1869 0.0089 9 6 4.1110 5.0837 -0.0013 10 7 5.3150 4.5703 -0.0004 11 6 5.2361 3.2399 0.0004 12 6 6.3989 2.2812 0.0021 13 7 6.7758 1.9711 1.3877 14 6 5.7084 1.2270 2.0695 15 6 8.0451 1.2332 1.4354 16 6 8.5230 1.1474 2.8620 17 1 7.9421 1.5964 3.6539 18 6 9.7023 0.4965 3.1561 19 7 10.1190 0.4212 4.4011 20 14 10.7075 -0.2796 1.7861 21 1 11.6768 0.7143 1.2592 22 1 11.4432 -1.4552 2.3170 23 1 9.8014 -0.7150 0.6930 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8808 6.1389 -0.0016 30 1 6.1134 1.3629 -0.5110 31 1 7.2457 2.7363 -0.5116 32 1 5.5219 0.2924 1.5405 33 1 6.0136 1.0100 3.0932 34 1 4.7979 1.8261 2.0808 35 1 7.8961 0.2280 1.0410 36 1 8.7904 1.7530 0.8332 37 1 10.9485 -0.0371 4.6080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232913442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:12 Heat of formation + Delta-G solvation = -42.853613 kcal Electronic energy + Delta-G solvation = -20597.380810 eV Core-core repulsion = 17375.278515 eV Total energy + Delta-G solvation = -3222.102295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.34635 -41.18505 -38.52729 -37.56080 -34.76887 -33.90208 -32.73177 -31.71845 -29.74153 -28.49109 -25.96283 -24.85130 -23.60037 -22.64624 -22.18810 -20.83041 -19.81592 -18.95259 -18.10782 -17.82732 -17.02660 -16.72172 -16.37155 -16.17979 -15.59558 -15.30290 -15.08341 -14.87765 -14.55167 -14.44204 -13.69282 -13.57575 -13.53076 -13.03531 -12.98451 -12.57603 -12.50120 -12.44894 -12.20245 -11.96919 -11.82841 -11.56770 -11.49126 -11.12444 -11.10863 -10.76688 -9.78823 -9.00758 -8.27223 -6.30593 -0.04612 1.36071 1.37819 1.38174 1.49354 1.66921 1.97257 2.05790 2.36382 3.05618 3.33832 3.46600 3.69517 3.98206 3.99277 4.05188 4.20718 4.33027 4.40138 4.51410 4.61705 4.67941 4.73540 4.83368 4.89830 4.90230 4.98855 5.09653 5.13051 5.28297 5.37084 5.51712 5.96155 6.27620 6.38463 6.56916 6.62354 6.73598 6.90347 7.32426 8.89546 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.005160 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.928873 B = 5425.549590 C = 6238.726977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.540 3.460 5 O -0.512 6.512 6 C -0.090 4.090 7 N -0.528 5.528 8 H 0.446 0.554 9 C 0.254 3.746 10 N -0.528 5.528 11 C 0.113 3.887 12 C 0.120 3.880 13 N -0.535 5.535 14 C 0.058 3.942 15 C 0.174 3.826 16 C -0.516 4.516 17 H 0.035 0.965 18 C 0.010 3.990 19 N -0.947 5.947 20 Si 0.948 3.052 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.254 1.254 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.274 0.726 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.050 0.950 35 H -0.012 1.012 36 H 0.032 0.968 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 5.374 -13.803 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.274 6.274 4 C 0.385 3.615 5 O -0.401 6.401 6 C -0.206 4.206 7 N -0.134 5.134 8 H 0.290 0.710 9 C -0.030 4.030 10 N -0.248 5.248 11 C -0.023 4.023 12 C -0.008 4.008 13 N -0.259 5.259 14 C -0.090 4.090 15 C 0.047 3.953 16 C -0.554 4.554 17 H 0.054 0.946 18 C -0.187 4.187 19 N -0.588 5.588 20 Si 0.771 3.229 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.178 1.178 24 H 0.093 0.907 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.289 0.711 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.005 0.995 36 H 0.050 0.950 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.726 5.841 -13.447 26.209 hybrid contribution -0.435 -1.701 -0.295 1.780 sum -22.160 4.140 -13.742 26.402 Atomic orbital electron populations 1.21818 0.89741 1.04534 1.03888 1.23347 0.97295 0.78515 1.02688 1.86520 1.22151 1.34373 1.84371 1.19615 0.81183 0.87582 0.73115 1.90936 1.60705 1.41692 1.46778 1.19621 0.92264 0.85292 1.23386 1.43177 1.11727 1.04253 1.54282 0.71040 1.26299 0.82206 0.97444 0.97040 1.70161 1.25372 1.07353 1.21939 1.20780 0.91495 0.91742 0.98268 1.20482 0.94417 0.95356 0.90573 1.61816 1.03570 1.46721 1.13827 1.22108 0.93014 0.95578 0.98296 1.19947 0.88006 0.91279 0.96061 1.21199 1.06978 1.34608 0.92658 0.94622 1.25821 0.98445 0.96320 0.98141 1.70043 1.23506 1.45010 1.20259 0.85708 0.79061 0.78630 0.79537 1.18590 1.20386 1.17815 0.90746 0.88211 0.91180 0.91060 0.91744 0.71093 0.92726 0.89797 0.95264 0.93880 0.93148 0.99455 0.94985 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.05 1.00 6.20 71.98 0.45 1.44 16 3 O -0.36 -7.93 10.23 -57.95 -0.59 -8.52 16 4 C 0.54 15.68 7.03 70.00 0.49 16.17 16 5 O -0.51 -18.20 11.58 19.48 0.23 -17.97 16 6 C -0.09 -2.54 6.21 39.97 0.25 -2.29 16 7 N -0.53 -9.15 6.19 -188.11 -1.16 -10.32 16 8 H 0.45 3.98 8.96 -92.71 -0.83 3.15 16 9 C 0.25 4.54 13.00 180.33 2.35 6.88 16 10 N -0.53 -16.20 11.20 -187.55 -2.10 -18.30 16 11 C 0.11 3.89 6.02 41.99 0.25 4.15 16 12 C 0.12 4.85 5.15 85.56 0.44 5.29 16 13 N -0.54 -25.68 4.74 -931.63 -4.42 -30.10 16 14 C 0.06 2.68 7.86 127.69 1.00 3.68 16 15 C 0.17 9.24 3.79 85.56 0.32 9.56 16 16 C -0.52 -32.02 9.01 25.60 0.23 -31.79 16 17 H 0.04 2.46 7.37 -2.91 -0.02 2.44 16 18 C 0.01 0.61 5.47 84.66 0.46 1.07 16 19 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 20 Si 0.95 46.28 27.47 68.60 1.88 48.16 16 21 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.27 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.05 2.21 6.46 -2.39 -0.02 2.20 16 31 H 0.08 3.31 7.93 -2.39 -0.02 3.29 16 32 H 0.03 1.34 6.35 -2.39 -0.02 1.32 16 33 H 0.04 2.18 6.76 -2.39 -0.02 2.17 16 34 H 0.05 2.09 5.73 -2.39 -0.01 2.08 16 35 H -0.01 -0.65 7.18 -2.39 -0.02 -0.67 16 36 H 0.03 1.65 7.36 -2.39 -0.02 1.63 16 37 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -82.24 307.34 1.33 -80.91 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.21 Total: 3.89 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.99 Total: 13.41 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -7.39 Total: -119.88 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.37 Total: -26.49 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.16 kcal Total: -82.24 1.33 -80.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232913442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.056 kcal (2) G-P(sol) polarization free energy of solvation -82.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds