Wall clock time and date at job start Mon Mar 30 2020 00:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47395 * 2 1 4 4 C 1.35958 * 116.99813 * 180.02562 * 3 2 1 5 5 C 1.38655 * 120.06410 * 359.97438 * 4 3 2 6 6 C 1.38177 * 119.97092 * 180.02562 * 5 4 3 7 7 C 1.50704 * 119.95723 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.46987 * 89.99482 * 7 6 5 9 9 C 1.46906 * 110.99869 * 66.05409 * 8 7 6 10 10 C 1.46897 * 110.99818 * 190.00128 * 8 7 6 11 11 C 1.50712 * 109.47207 * 170.00475 * 10 8 7 12 12 H 1.07997 * 119.99572 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00006 * 180.02562 * 11 10 8 14 14 N 1.31505 * 120.00188 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99665 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46932 * 90.00004 * 15 13 11 17 17 H 1.48497 * 109.47302 * 209.99809 * 15 13 11 18 18 H 1.48497 * 109.47395 * 330.00165 * 15 13 11 19 19 C 1.38267 * 120.09453 * 359.97438 * 6 5 4 20 20 C 1.38251 * 120.12749 * 0.02562 * 19 6 5 21 21 C 1.38338 * 120.03013 * 359.97438 * 20 19 6 22 22 F 1.35100 * 120.04992 * 180.28191 * 21 20 19 23 23 H 1.09001 * 109.47206 * 300.00250 * 1 2 3 24 24 H 1.09011 * 109.47059 * 59.99713 * 1 2 3 25 25 H 1.08996 * 109.47909 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46784 * 239.99944 * 2 1 3 27 27 H 1.08998 * 109.46795 * 120.00381 * 2 1 3 28 28 H 1.08005 * 120.01507 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47538 * 210.00173 * 7 6 5 30 30 H 1.09007 * 109.46859 * 330.00188 * 7 6 5 31 31 H 1.09004 * 109.47178 * 59.99563 * 9 8 7 32 32 H 1.08997 * 109.47274 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46600 * 299.99964 * 9 8 7 34 34 H 1.09002 * 109.47626 * 290.00054 * 10 8 7 35 35 H 1.08998 * 109.47140 * 50.00884 * 10 8 7 36 36 H 0.96998 * 120.00210 * 179.97438 * 14 13 11 37 37 H 1.08000 * 119.93539 * 179.97438 * 19 6 5 38 38 H 1.08000 * 119.99069 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5252 -0.0005 5 6 4.2000 0.4265 -0.0005 6 6 5.5696 0.6097 -0.0005 7 6 6.4886 -0.5848 -0.0011 8 7 6.7869 -0.9723 -1.3863 9 6 7.5672 0.0692 -2.0679 10 6 7.4816 -2.2658 -1.4330 11 6 7.5526 -2.7467 -2.8595 12 1 7.1247 -2.1508 -3.6521 13 6 8.1636 -3.9474 -3.1526 14 7 8.6841 -4.6732 -2.1874 15 14 8.2508 -4.5438 -4.9207 16 1 9.4968 -4.0397 -5.5522 17 1 8.2503 -6.0286 -4.9429 18 1 7.0748 -4.0371 -5.6726 19 6 6.0982 1.8873 -0.0011 20 6 5.2586 2.9856 -0.0011 21 6 3.8866 2.8083 -0.0011 22 9 3.0658 3.8813 -0.0069 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7885 -0.5721 -0.0005 29 1 7.4155 -0.3303 0.5128 30 1 6.0047 -1.4157 0.5124 31 1 8.5072 0.2242 -1.5380 32 1 7.7747 -0.2435 -3.0912 33 1 6.9992 0.9994 -2.0798 34 1 8.4910 -2.1507 -1.0378 35 1 6.9365 -2.9929 -0.8311 36 1 9.1136 -5.5181 -2.3936 37 1 7.1691 2.0275 -0.0007 38 1 5.6739 3.9826 -0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235801416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:31 Heat of formation + Delta-G solvation = -59.702556 kcal Electronic energy + Delta-G solvation = -20000.543425 eV Core-core repulsion = 16757.790544 eV Total energy + Delta-G solvation = -3242.752882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.67302 -40.07227 -38.05840 -36.09391 -32.74365 -31.98801 -31.01852 -29.60974 -27.16986 -26.58374 -24.42852 -23.57458 -21.86574 -21.48800 -20.26671 -18.04989 -17.04439 -16.64665 -16.35794 -16.32293 -15.25632 -14.99845 -14.56998 -14.38928 -14.21545 -13.99802 -13.84725 -13.13776 -13.01054 -12.89597 -12.67087 -11.98314 -11.86678 -11.78849 -11.49027 -11.39790 -11.06926 -10.99257 -10.86622 -10.78867 -10.64767 -10.43766 -9.90462 -9.27335 -8.74555 -8.48028 -8.08076 -7.31061 -6.06640 -4.08076 1.21421 1.34497 3.04472 3.29442 3.35858 3.40268 3.63091 4.31302 4.40290 4.70862 4.81343 4.82165 4.98532 5.08841 5.14317 5.23759 5.27959 5.31648 5.42485 5.61738 5.65185 5.75611 5.89751 5.96845 6.06883 6.15057 6.17779 6.26825 6.30886 6.65545 6.71125 6.76557 7.21577 7.27641 7.32832 7.74905 8.01558 8.13168 8.48189 8.99563 9.56394 11.04228 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.004345 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.023761 B = 6442.961924 C = 7191.852120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.313 6.313 4 C 0.097 3.903 5 C -0.161 4.161 6 C -0.029 4.029 7 C 0.087 3.913 8 N -0.534 5.534 9 C 0.033 3.967 10 C 0.192 3.808 11 C -0.508 4.508 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.125 4.125 20 C -0.117 4.117 21 C 0.054 3.946 22 F -0.139 7.139 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.049 0.951 34 H -0.008 1.008 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.131 0.869 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 11.537 6.391 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.051 3.949 5 C -0.181 4.181 6 C -0.030 4.030 7 C -0.041 4.041 8 N -0.258 5.258 9 C -0.115 4.115 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.143 4.143 20 C -0.136 4.136 21 C 0.034 3.966 22 F -0.118 7.118 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.010 0.990 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.149 0.851 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.822 11.461 6.169 16.927 hybrid contribution 0.872 -0.413 -0.525 1.098 sum -9.951 11.048 5.644 15.904 Atomic orbital electron populations 1.21765 0.92731 1.02891 1.03350 1.22856 0.95813 0.81617 1.02073 1.86084 1.18046 1.29736 1.88830 1.18929 0.83333 0.92810 0.99875 1.21050 0.93359 0.97790 1.05858 1.19860 0.93423 0.95031 0.94689 1.21084 0.96204 0.94160 0.92675 1.62165 1.47857 1.04671 1.11154 1.22307 0.94431 0.94317 1.00477 1.19769 0.91575 0.83927 0.97972 1.21150 1.36088 1.04673 0.92708 0.91824 1.24977 0.95498 0.96611 0.97462 1.69949 1.38424 1.13714 1.31767 0.86502 0.78455 0.77791 0.84710 1.20709 1.21235 1.19762 1.20872 0.99962 0.91156 1.02351 1.20907 0.90337 1.00502 1.01870 1.16924 0.87937 0.80819 1.10873 1.91460 1.72187 1.53596 1.94565 0.91690 0.91551 0.90221 0.91326 0.91787 0.84332 0.94476 0.90295 0.96995 0.90675 0.93208 0.98985 0.95167 0.92891 0.85117 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.56 5.46 37.16 0.20 0.76 16 3 O -0.31 -4.43 10.00 -19.61 -0.20 -4.62 16 4 C 0.10 1.43 6.69 -39.18 -0.26 1.17 16 5 C -0.16 -2.36 8.69 -39.45 -0.34 -2.71 16 6 C -0.03 -0.44 4.88 -104.63 -0.51 -0.95 16 7 C 0.09 1.49 5.12 -4.98 -0.03 1.47 16 8 N -0.53 -11.19 4.74 -245.82 -1.17 -12.36 16 9 C 0.03 0.63 8.95 60.07 0.54 1.17 16 10 C 0.19 4.88 4.72 -4.97 -0.02 4.85 16 11 C -0.51 -14.02 8.46 -34.44 -0.29 -14.31 16 12 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 13 C 0.06 1.56 5.46 -17.83 -0.10 1.46 16 14 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 15 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.12 -1.67 7.95 -39.57 -0.31 -1.99 16 20 C -0.12 -1.50 10.02 -39.54 -0.40 -1.90 16 21 C 0.05 0.79 7.31 -39.29 -0.29 0.51 16 22 F -0.14 -2.10 17.11 2.25 0.04 -2.06 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.75 7.66 -51.93 -0.40 0.36 16 27 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.14 1.90 6.30 -52.48 -0.33 1.57 16 29 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 30 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 33 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 34 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 35 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.13 1.57 8.03 -52.49 -0.42 1.15 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -30.32 320.62 -7.71 -38.02 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.50 Total: -3.24 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.43 Total: -11.36 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.43 Total: -37.91 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.20 Total: -4.62 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.32 -7.71 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235801416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.678 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds