Wall clock time and date at job start Mon Mar 30 2020 00:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47049 * 2 1 4 4 C 1.47200 * 109.47357 * 240.00665 * 2 1 3 5 5 N 2.60801 * 109.47136 * 240.00312 * 2 1 3 6 6 C 1.50697 * 109.47231 * 119.99895 * 2 1 3 7 7 O 1.21280 * 119.99831 * 120.00098 * 6 2 1 8 8 N 1.34773 * 120.00586 * 300.00478 * 6 2 1 9 9 C 1.46496 * 120.00500 * 179.97438 * 8 6 2 10 10 C 1.53000 * 109.46979 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.67975 * 295.39327 * 10 9 8 12 12 C 1.53306 * 109.67806 * 174.87848 * 10 9 8 13 13 O 1.42956 * 109.21800 * 187.97546 * 12 10 9 14 14 C 1.42963 * 114.17001 * 62.58396 * 13 12 10 15 15 C 1.53299 * 109.21840 * 297.41653 * 14 13 12 16 16 N 1.47145 * 109.68279 * 55.95257 * 10 9 8 17 17 C 1.36939 * 120.98188 * 350.23279 * 16 10 9 18 18 H 1.08002 * 119.99816 * 43.30439 * 17 16 10 19 19 C 1.38814 * 120.00160 * 223.29582 * 17 16 10 20 20 N 1.31619 * 120.00159 * 211.26388 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 31.26628 * 19 17 16 22 22 H 1.48503 * 109.47071 * 84.90175 * 21 19 17 23 23 H 1.48497 * 109.47071 * 204.90510 * 21 19 17 24 24 H 1.48500 * 109.47058 * 324.90638 * 21 19 17 25 25 H 1.09002 * 109.47025 * 60.00141 * 1 2 3 26 26 H 1.09006 * 109.46730 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47455 * 299.99649 * 1 2 3 28 28 H 0.97005 * 119.99504 * 359.97438 * 8 6 2 29 29 H 1.08994 * 109.47301 * 300.00365 * 9 8 6 30 30 H 1.08999 * 109.46793 * 59.99937 * 9 8 6 31 31 H 1.08999 * 109.51012 * 307.89757 * 12 10 9 32 32 H 1.08995 * 109.50829 * 68.00191 * 12 10 9 33 33 H 1.09003 * 109.51217 * 57.33518 * 14 13 12 34 34 H 1.08996 * 109.51435 * 177.49554 * 14 13 12 35 35 H 1.08996 * 109.68012 * 172.02933 * 15 14 13 36 36 H 1.09003 * 109.68083 * 292.57711 * 15 14 13 37 37 H 0.97000 * 119.99581 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1191 8 7 1.7068 -0.2501 2.4546 9 6 2.1947 -0.9410 3.6507 10 6 1.6852 -0.2193 4.8999 11 1 2.1131 0.7821 4.9455 12 6 2.0852 -1.0091 6.1515 13 8 1.4502 -0.4320 7.2950 14 6 0.0219 -0.4841 7.2599 15 6 -0.4836 0.3325 6.0651 16 7 0.2171 -0.1303 4.8568 17 6 -0.4766 -0.4678 3.7254 18 1 -0.2079 -1.3554 3.1718 19 6 -1.5254 0.3307 3.2901 20 7 -2.5449 -0.2095 2.6568 21 14 -1.4895 2.1719 3.6030 22 1 -0.7172 2.8421 2.5261 23 1 -2.8778 2.6986 3.6178 24 1 -0.8448 2.4388 4.9139 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.1493 0.5388 2.5436 29 1 1.8311 -1.9685 3.6505 30 1 3.2847 -0.9413 3.6508 31 1 1.7685 -2.0465 6.0440 32 1 3.1672 -0.9697 6.2764 33 1 -0.3022 -1.5196 7.1564 34 1 -0.3804 -0.0663 8.1827 35 1 -1.5569 0.1840 5.9467 36 1 -0.2746 1.3898 6.2283 37 1 -3.2775 0.3486 2.3524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280399114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:39 Heat of formation + Delta-G solvation = -21.591672 kcal Electronic energy + Delta-G solvation = -21472.542262 eV Core-core repulsion = 18251.361954 eV Total energy + Delta-G solvation = -3221.180308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71490 -38.64343 -36.36174 -35.47285 -33.63977 -33.09962 -31.75034 -30.85231 -27.62850 -25.80474 -24.57066 -23.41800 -22.24990 -20.33838 -19.99721 -17.80899 -17.04576 -16.46876 -15.95326 -15.85907 -15.07557 -14.95853 -14.55827 -14.35693 -14.16913 -13.70457 -13.42934 -13.13701 -12.79523 -12.72733 -12.39328 -12.20125 -12.04231 -11.85651 -11.62541 -11.46165 -11.14358 -11.00188 -10.82235 -10.80564 -10.41373 -9.99914 -9.74762 -9.53520 -9.24766 -8.63946 -8.38293 -6.89025 -6.30628 -3.70604 2.79504 2.90758 3.10609 3.14280 3.30792 3.34715 3.74089 4.13324 4.29178 4.31581 4.60802 4.99936 5.12229 5.17726 5.24959 5.40933 5.52881 5.64838 5.79991 5.89797 5.92195 5.94433 5.99723 6.10608 6.12642 6.24012 6.41445 6.58528 6.60760 6.73909 6.98335 7.59786 7.72991 7.75411 8.08431 8.18943 8.66878 8.70255 9.41345 9.92070 10.81526 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.008087 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.031607 B = 3461.526120 C = 4546.544421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 H 0.132 0.868 4 C 0.235 3.765 5 N -0.432 5.432 6 C 0.519 3.481 7 O -0.555 6.555 8 N -0.681 5.681 9 C 0.139 3.861 10 C 0.120 3.880 11 H 0.045 0.955 12 C 0.056 3.944 13 O -0.390 6.390 14 C 0.043 3.957 15 C 0.108 3.892 16 N -0.600 5.600 17 C -0.282 4.282 18 H 0.083 0.917 19 C 0.055 3.945 20 N -0.867 5.867 21 Si 0.827 3.173 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.255 1.255 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.415 0.585 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 4.336 3.715 7.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 H 0.150 0.850 4 C -0.084 4.084 5 N -0.108 5.108 6 C 0.302 3.698 7 O -0.435 6.435 8 N -0.333 5.333 9 C 0.014 3.986 10 C 0.013 3.987 11 H 0.063 0.937 12 C -0.023 4.023 13 O -0.308 6.308 14 C -0.035 4.035 15 C -0.018 4.018 16 N -0.327 5.327 17 C -0.409 4.409 18 H 0.100 0.900 19 C -0.149 4.149 20 N -0.505 5.505 21 Si 0.653 3.347 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.180 1.180 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.255 0.745 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.458 2.920 2.301 6.604 hybrid contribution -0.862 1.618 0.314 1.860 sum 4.596 4.538 2.615 6.969 Atomic orbital electron populations 1.21825 0.88474 1.05061 1.04580 1.18908 0.99596 0.99582 0.85799 0.85002 1.28265 0.92964 0.93381 0.93770 1.81102 1.08757 1.08395 1.12542 1.19810 0.80654 0.84856 0.84442 1.90709 1.39245 1.26626 1.86883 1.45971 1.51294 1.32113 1.03967 1.21133 0.96957 0.97086 0.83395 1.21584 0.87045 0.97176 0.92858 0.93722 1.22877 0.96754 0.96400 0.86270 1.87823 1.19662 1.81883 1.41438 1.23129 0.80885 1.00215 0.99277 1.22046 0.97432 0.96078 0.86203 1.44344 0.99180 1.79070 1.10093 1.18719 1.12728 1.06522 1.02969 0.89956 1.25612 0.95901 0.97189 0.96211 1.70032 1.06129 1.35368 1.38942 0.87692 0.77388 0.89541 0.80091 1.20751 1.22036 1.17959 0.91454 0.90733 0.88436 0.74522 0.91198 0.91976 0.93031 0.89550 0.93266 0.89976 0.90627 0.94571 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.04 37.16 0.34 -1.77 16 2 C -0.01 -0.21 3.10 -94.56 -0.29 -0.50 16 3 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.23 3.91 13.88 -20.76 -0.29 3.62 16 5 N -0.43 -8.03 18.54 42.15 0.78 -7.25 16 6 C 0.52 8.99 7.14 -10.99 -0.08 8.91 16 7 O -0.56 -11.52 16.03 5.56 0.09 -11.43 16 8 N -0.68 -11.47 3.70 -60.30 -0.22 -11.69 16 9 C 0.14 2.28 4.52 -4.04 -0.02 2.26 16 10 C 0.12 1.99 3.27 -67.42 -0.22 1.77 16 11 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 12 C 0.06 0.85 6.29 37.32 0.23 1.09 16 13 O -0.39 -6.55 10.74 -35.23 -0.38 -6.93 16 14 C 0.04 0.70 6.99 37.31 0.26 0.96 16 15 C 0.11 2.01 4.78 -3.53 -0.02 1.99 16 16 N -0.60 -11.71 2.46 -164.30 -0.40 -12.11 16 17 C -0.28 -6.19 6.38 -15.06 -0.10 -6.28 16 18 H 0.08 2.04 6.71 -52.49 -0.35 1.69 16 19 C 0.06 1.26 3.97 -17.43 -0.07 1.19 16 20 N -0.87 -21.54 13.97 55.49 0.78 -20.77 16 21 Si 0.83 17.26 27.33 -169.99 -4.65 12.61 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.25 -5.25 4.95 56.52 0.28 -4.97 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 1.63 6.55 -51.93 -0.34 1.29 16 28 H 0.41 7.07 6.19 -40.82 -0.25 6.82 16 29 H 0.07 1.28 7.80 -51.93 -0.41 0.87 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.50 7.29 -51.93 -0.38 1.12 16 36 H 0.04 0.70 6.39 -51.93 -0.33 0.36 16 37 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 LS Contribution 303.80 15.07 4.58 4.58 Total: -1.00 -27.91 303.80 -4.80 -32.71 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.12 Total: 7.05 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -0.25 Total: 13.24 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.93 Total: -51.82 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.29 Total: -18.36 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -4.65 Total: 12.61 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.91 -4.80 -32.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280399114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.118 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds