Wall clock time and date at job start Mon Mar 30 2020 00:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47049 * 2 1 4 4 C 1.47200 * 109.47357 * 240.00665 * 2 1 3 5 5 N 2.60801 * 109.47136 * 240.00312 * 2 1 3 6 6 C 1.50697 * 109.47231 * 119.99895 * 2 1 3 7 7 O 1.21280 * 119.99831 * 120.00098 * 6 2 1 8 8 N 1.34773 * 120.00586 * 300.00478 * 6 2 1 9 9 C 1.46496 * 120.00500 * 179.97438 * 8 6 2 10 10 C 1.53000 * 109.46979 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.67975 * 295.39327 * 10 9 8 12 12 C 1.53306 * 109.67806 * 174.87848 * 10 9 8 13 13 O 1.42956 * 109.21800 * 187.97546 * 12 10 9 14 14 C 1.42963 * 114.17001 * 62.58396 * 13 12 10 15 15 C 1.53299 * 109.21840 * 297.41653 * 14 13 12 16 16 N 1.47145 * 109.68279 * 55.95257 * 10 9 8 17 17 C 1.36939 * 120.98188 * 350.23279 * 16 10 9 18 18 H 1.08002 * 119.99816 * 43.30439 * 17 16 10 19 19 C 1.38814 * 120.00160 * 223.29582 * 17 16 10 20 20 N 1.31619 * 120.00159 * 211.26388 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 31.26628 * 19 17 16 22 22 H 1.48503 * 109.47071 * 84.90175 * 21 19 17 23 23 H 1.48497 * 109.47071 * 204.90510 * 21 19 17 24 24 H 1.48500 * 109.47058 * 324.90638 * 21 19 17 25 25 H 1.09002 * 109.47025 * 60.00141 * 1 2 3 26 26 H 1.09006 * 109.46730 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47455 * 299.99649 * 1 2 3 28 28 H 0.97005 * 119.99504 * 359.97438 * 8 6 2 29 29 H 1.08994 * 109.47301 * 300.00365 * 9 8 6 30 30 H 1.08999 * 109.46793 * 59.99937 * 9 8 6 31 31 H 1.08999 * 109.51012 * 307.89757 * 12 10 9 32 32 H 1.08995 * 109.50829 * 68.00191 * 12 10 9 33 33 H 1.09003 * 109.51217 * 57.33518 * 14 13 12 34 34 H 1.08996 * 109.51435 * 177.49554 * 14 13 12 35 35 H 1.08996 * 109.68012 * 172.02933 * 15 14 13 36 36 H 1.09003 * 109.68083 * 292.57711 * 15 14 13 37 37 H 0.97000 * 119.99581 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1191 8 7 1.7068 -0.2501 2.4546 9 6 2.1947 -0.9410 3.6507 10 6 1.6852 -0.2193 4.8999 11 1 2.1131 0.7821 4.9455 12 6 2.0852 -1.0091 6.1515 13 8 1.4502 -0.4320 7.2950 14 6 0.0219 -0.4841 7.2599 15 6 -0.4836 0.3325 6.0651 16 7 0.2171 -0.1303 4.8568 17 6 -0.4766 -0.4678 3.7254 18 1 -0.2079 -1.3554 3.1718 19 6 -1.5254 0.3307 3.2901 20 7 -2.5449 -0.2095 2.6568 21 14 -1.4895 2.1719 3.6030 22 1 -0.7172 2.8421 2.5261 23 1 -2.8778 2.6986 3.6178 24 1 -0.8448 2.4388 4.9139 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.1493 0.5388 2.5436 29 1 1.8311 -1.9685 3.6505 30 1 3.2847 -0.9413 3.6508 31 1 1.7685 -2.0465 6.0440 32 1 3.1672 -0.9697 6.2764 33 1 -0.3022 -1.5196 7.1564 34 1 -0.3804 -0.0663 8.1827 35 1 -1.5569 0.1840 5.9467 36 1 -0.2746 1.3898 6.2283 37 1 -3.2775 0.3486 2.3524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280399114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:39 Heat of formation + Delta-G solvation = -40.840605 kcal Electronic energy + Delta-G solvation = -21473.376959 eV Core-core repulsion = 18251.361954 eV Total energy + Delta-G solvation = -3222.015005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11791 -40.01674 -37.73179 -36.92117 -35.15161 -34.46705 -33.37046 -32.21394 -29.15418 -27.15214 -25.84220 -24.99184 -23.63852 -21.73094 -21.46454 -19.24718 -18.46153 -17.90764 -17.41424 -17.18507 -16.53875 -16.34174 -15.95518 -15.81986 -15.54622 -15.14439 -14.83415 -14.57141 -14.38614 -14.14371 -13.83915 -13.65406 -13.45957 -13.16018 -12.99289 -12.81647 -12.57092 -12.41251 -12.32823 -12.18370 -11.97490 -11.50670 -11.25121 -10.95364 -10.70360 -10.29160 -9.84213 -8.49296 -8.09217 -5.46889 1.44892 1.47797 1.58462 1.61955 1.66320 1.74623 2.42759 2.58953 2.84093 2.97661 3.09481 3.38361 3.82017 3.99057 4.06093 4.14391 4.24428 4.34244 4.45482 4.53938 4.64746 4.69035 4.79025 4.83699 4.85988 4.91294 5.03903 5.14222 5.34334 5.35762 5.60944 6.01250 6.30534 6.41806 6.42274 6.70154 7.01505 7.30262 7.68898 8.22227 9.06402 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.008087 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.031607 B = 3461.526120 C = 4546.544421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.183 0.817 4 C 0.250 3.750 5 N -0.469 5.469 6 C 0.517 3.483 7 O -0.593 6.593 8 N -0.678 5.678 9 C 0.141 3.859 10 C 0.122 3.878 11 H 0.058 0.942 12 C 0.057 3.943 13 O -0.394 6.394 14 C 0.050 3.950 15 C 0.105 3.895 16 N -0.611 5.611 17 C -0.260 4.260 18 H 0.049 0.951 19 C 0.027 3.973 20 N -0.910 5.910 21 Si 0.875 3.125 22 H -0.262 1.262 23 H -0.316 1.316 24 H -0.248 1.248 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.416 0.584 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 6.073 4.665 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 H 0.200 0.800 4 C -0.068 4.068 5 N -0.145 5.145 6 C 0.302 3.698 7 O -0.475 6.475 8 N -0.328 5.328 9 C 0.017 3.983 10 C 0.016 3.984 11 H 0.076 0.924 12 C -0.022 4.022 13 O -0.312 6.312 14 C -0.028 4.028 15 C -0.020 4.020 16 N -0.338 5.338 17 C -0.388 4.388 18 H 0.066 0.934 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.701 3.299 22 H -0.187 1.187 23 H -0.244 1.244 24 H -0.172 1.172 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.255 0.745 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.753 4.678 3.279 8.846 hybrid contribution -1.256 1.003 0.090 1.610 sum 5.497 5.681 3.369 8.593 Atomic orbital electron populations 1.21723 0.88684 1.03498 1.05230 1.19035 0.98988 1.01462 0.83323 0.79997 1.28596 0.92013 0.92541 0.93627 1.81114 1.10005 1.09496 1.13913 1.20235 0.79952 0.84358 0.85248 1.90696 1.41129 1.28298 1.87426 1.45936 1.50877 1.31878 1.04132 1.21139 0.98174 0.95667 0.83341 1.21704 0.85021 0.98042 0.93624 0.92409 1.22982 0.98527 0.95553 0.85123 1.87830 1.19636 1.81917 1.41859 1.23084 0.80880 0.99527 0.99343 1.22048 0.96543 0.96540 0.86838 1.44447 1.00611 1.79089 1.09689 1.18384 1.12376 1.04952 1.03133 0.93381 1.25865 0.95500 0.99678 0.96401 1.70129 1.07108 1.36337 1.41478 0.86953 0.76239 0.85856 0.80853 1.18722 1.24370 1.17227 0.88625 0.93463 0.89833 0.74452 0.93686 0.89676 0.93742 0.86267 0.93919 0.87224 0.92385 0.94433 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.04 71.98 0.65 -3.15 16 2 C 0.00 -0.11 3.10 -13.35 -0.04 -0.15 16 3 H 0.18 3.07 8.14 -2.38 -0.02 3.05 16 4 C 0.25 8.00 13.88 89.44 1.24 9.25 16 5 N -0.47 -17.14 18.54 20.01 0.37 -16.77 16 6 C 0.52 17.37 7.14 87.66 0.63 17.99 16 7 O -0.59 -24.43 16.03 -3.03 -0.05 -24.48 16 8 N -0.68 -21.91 3.70 -463.09 -1.71 -23.62 16 9 C 0.14 4.44 4.52 86.38 0.39 4.83 16 10 C 0.12 3.78 3.27 44.97 0.15 3.93 16 11 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 12 C 0.06 1.57 6.29 72.08 0.45 2.03 16 13 O -0.39 -12.07 10.74 -148.98 -1.60 -13.67 16 14 C 0.05 1.50 6.99 72.08 0.50 2.00 16 15 C 0.11 3.76 4.78 86.36 0.41 4.17 16 16 N -0.61 -23.07 2.46 -673.73 -1.66 -24.73 16 17 C -0.26 -11.39 6.38 84.03 0.54 -10.85 16 18 H 0.05 2.45 6.71 -2.91 -0.02 2.43 16 19 C 0.03 1.22 3.97 84.86 0.34 1.55 16 20 N -0.91 -46.03 13.97 21.65 0.30 -45.73 16 21 Si 0.87 34.80 27.33 68.60 1.87 36.68 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 23 H -0.32 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.25 -9.49 4.95 99.48 0.49 -9.00 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.08 2.69 6.55 -2.39 -0.02 2.67 16 28 H 0.42 13.41 6.19 -92.70 -0.57 12.83 16 29 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 2.71 8.14 -2.39 -0.02 2.70 16 35 H 0.06 2.26 7.29 -2.39 -0.02 2.24 16 36 H 0.04 1.35 6.39 -2.39 -0.02 1.33 16 37 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 Total: -1.00 -60.74 303.80 3.09 -57.65 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.30 Total: 23.07 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 5.26 Total: 31.59 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -2.70 Total: -110.85 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.65 Total: -38.15 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 1.87 Total: 36.68 kcal Total: -60.74 3.09 -57.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280399114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.812 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds