Wall clock time and date at job start Mon Mar 30 2020 00:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47243 * 2 1 4 4 C 1.47194 * 109.47211 * 239.99533 * 2 1 3 5 5 N 2.60796 * 109.47087 * 239.99677 * 2 1 3 6 6 C 1.50709 * 109.47178 * 120.00006 * 2 1 3 7 7 O 1.21278 * 120.00339 * 119.99756 * 6 2 1 8 8 N 1.34780 * 119.99503 * 300.00042 * 6 2 1 9 9 C 1.46500 * 119.99587 * 180.02562 * 8 6 2 10 10 C 1.53004 * 109.46866 * 179.97438 * 9 8 6 11 11 H 1.08992 * 109.70808 * 59.84895 * 10 9 8 12 12 C 1.53716 * 109.74353 * 180.61348 * 10 9 8 13 13 O 1.42961 * 109.14524 * 172.16545 * 12 10 9 14 14 C 1.42968 * 114.16871 * 297.28619 * 13 12 10 15 15 C 1.53296 * 109.21892 * 62.57833 * 14 13 12 16 16 N 1.47149 * 109.68040 * 299.30594 * 10 9 8 17 17 C 1.36932 * 120.98612 * 9.76524 * 16 10 9 18 18 H 1.08001 * 119.99853 * 328.63351 * 17 16 10 19 19 C 1.38808 * 120.00349 * 148.62805 * 17 16 10 20 20 N 1.31620 * 119.99767 * 349.27659 * 19 17 16 21 21 Si 1.86795 * 120.00129 * 169.27067 * 19 17 16 22 22 H 1.48507 * 109.47251 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47289 * 300.00423 * 21 19 17 24 24 H 1.48500 * 109.47281 * 60.00423 * 21 19 17 25 25 H 1.09003 * 109.47021 * 300.00386 * 1 2 3 26 26 H 1.09000 * 109.47111 * 60.00126 * 1 2 3 27 27 H 1.08997 * 109.46911 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00393 * 359.97438 * 8 6 2 29 29 H 1.09002 * 109.47350 * 59.99870 * 9 8 6 30 30 H 1.08998 * 109.47179 * 299.99291 * 9 8 6 31 31 H 1.08999 * 109.65757 * 52.20130 * 12 10 9 32 32 H 1.09003 * 109.48483 * 292.02635 * 12 10 9 33 33 H 1.08997 * 109.50880 * 302.66068 * 14 13 12 34 34 H 1.08991 * 109.55564 * 182.53129 * 14 13 12 35 35 H 1.08997 * 109.68379 * 187.97423 * 15 14 13 36 36 H 1.09002 * 109.70865 * 67.44248 * 15 14 13 37 37 H 0.97002 * 119.99846 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1293 6 6 2.0324 -0.7104 1.2305 7 8 2.7296 -1.6965 1.1193 8 7 1.7067 -0.2499 2.4546 9 6 2.1955 -0.9402 3.6508 10 6 1.6859 -0.2185 4.9000 11 1 0.5960 -0.2140 4.9029 12 6 2.2079 -0.9289 6.1593 13 8 1.8799 -0.1456 7.3094 14 6 2.4900 1.1472 7.3305 15 6 1.9876 1.9619 6.1332 16 7 2.1874 1.1648 4.9125 17 6 2.8165 1.6965 3.8186 18 1 3.3958 1.0597 3.1663 19 6 2.7097 3.0537 3.5480 20 7 1.8424 3.7903 4.2094 21 14 3.7970 3.8347 2.2453 22 1 3.4906 5.2847 2.1490 23 1 5.2232 3.6543 2.6176 24 1 3.5420 3.1864 0.9339 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.1494 0.5390 2.5436 29 1 3.2855 -0.9397 3.6507 30 1 1.8325 -1.9679 3.6510 31 1 3.2898 -1.0438 6.0936 32 1 1.7418 -1.9107 6.2425 33 1 3.5729 1.0397 7.2690 34 1 2.2270 1.6596 8.2558 35 1 2.5504 2.8925 6.0602 36 1 0.9275 2.1829 6.2578 37 1 1.7680 4.7389 4.0205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280399117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:48 Heat of formation + Delta-G solvation = -28.023652 kcal Electronic energy + Delta-G solvation = -21204.170270 eV Core-core repulsion = 17982.711050 eV Total energy + Delta-G solvation = -3221.459220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76174 -38.47180 -36.45726 -35.37798 -33.78887 -33.17820 -31.41988 -30.42690 -27.30005 -25.87414 -24.81700 -23.52535 -21.91795 -20.42414 -19.76631 -17.92943 -17.05144 -16.47463 -15.99396 -15.63580 -15.12744 -14.71572 -14.60541 -14.19045 -14.02015 -13.61031 -13.52897 -13.07060 -12.96219 -12.72372 -12.59615 -12.17896 -11.96095 -11.77624 -11.59915 -11.38263 -11.08844 -10.94524 -10.83544 -10.48972 -10.34365 -10.12831 -9.73875 -9.58147 -9.04670 -8.77294 -8.42820 -6.81644 -5.99267 -3.49924 2.69811 2.79412 3.00455 3.19520 3.29713 3.32540 3.64715 3.99755 4.25615 4.47770 4.91709 4.94378 5.06783 5.17067 5.20422 5.49856 5.57244 5.65696 5.70679 5.78034 5.95221 5.99295 6.01560 6.10479 6.16162 6.27498 6.46212 6.67272 6.91740 7.00823 7.42692 7.60527 7.62870 7.81174 7.99902 8.20392 8.58447 8.96544 9.57076 10.16798 11.06619 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.007727 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.366790 B = 3622.651501 C = 4782.079332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 H 0.142 0.858 4 C 0.233 3.767 5 N -0.429 5.429 6 C 0.518 3.482 7 O -0.553 6.553 8 N -0.685 5.685 9 C 0.135 3.865 10 C 0.125 3.875 11 H 0.044 0.956 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.034 3.966 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.260 4.260 18 H 0.073 0.927 19 C 0.011 3.989 20 N -0.898 5.898 21 Si 0.896 3.104 22 H -0.289 1.289 23 H -0.283 1.283 24 H -0.280 1.280 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.418 0.582 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.030 0.970 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -3.387 0.279 5.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 H 0.159 0.841 4 C -0.086 4.086 5 N -0.104 5.104 6 C 0.301 3.699 7 O -0.432 6.432 8 N -0.337 5.337 9 C 0.011 3.989 10 C 0.018 3.982 11 H 0.061 0.939 12 C -0.024 4.024 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.018 3.982 16 N -0.317 5.317 17 C -0.389 4.389 18 H 0.091 0.909 19 C -0.189 4.189 20 N -0.541 5.541 21 Si 0.725 3.275 22 H -0.215 1.215 23 H -0.209 1.209 24 H -0.206 1.206 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.257 0.743 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.080 -4.750 -1.051 5.758 hybrid contribution 0.466 1.396 -0.405 1.527 sum -2.614 -3.354 -1.456 4.495 Atomic orbital electron populations 1.21773 0.89785 1.03808 1.04536 1.18911 0.98748 1.00664 0.85912 0.84074 1.28209 0.93252 0.93359 0.93772 1.81118 1.08254 1.08586 1.12467 1.19790 0.81096 0.84564 0.84411 1.90721 1.38778 1.26828 1.86841 1.45909 1.52105 1.31574 1.04066 1.21215 0.99859 0.94281 0.83516 1.21521 0.96878 0.87654 0.92156 0.93886 1.22943 0.99207 0.93620 0.86587 1.87805 1.72698 1.28451 1.42147 1.23353 0.96395 0.84188 1.00405 1.21421 0.99071 0.94610 0.83066 1.44085 1.67294 1.08044 1.12267 1.19194 1.23956 0.92139 1.03597 0.90921 1.25150 0.97513 0.97751 0.98499 1.69963 1.34683 1.06517 1.42933 0.86491 0.80847 0.78521 0.81603 1.21473 1.20921 1.20634 0.89462 0.90652 0.91324 0.74275 0.91259 0.92017 0.93465 0.89915 0.94128 0.90243 0.88949 0.95192 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.04 37.16 0.34 -1.04 16 2 C -0.02 -0.24 3.10 -94.56 -0.29 -0.53 16 3 H 0.14 1.68 8.14 -51.93 -0.42 1.26 16 4 C 0.23 3.65 13.88 -20.76 -0.29 3.37 16 5 N -0.43 -7.63 18.54 42.15 0.78 -6.85 16 6 C 0.52 8.48 7.14 -10.98 -0.08 8.40 16 7 O -0.55 -11.05 16.03 5.56 0.09 -10.96 16 8 N -0.69 -11.05 3.67 -60.29 -0.22 -11.28 16 9 C 0.14 2.24 4.46 -4.04 -0.02 2.22 16 10 C 0.12 2.21 3.23 -67.20 -0.22 1.99 16 11 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 12 C 0.06 0.91 6.31 37.53 0.24 1.15 16 13 O -0.39 -7.21 10.74 -35.23 -0.38 -7.59 16 14 C 0.03 0.63 6.99 37.31 0.26 0.89 16 15 C 0.14 3.05 5.37 -3.53 -0.02 3.03 16 16 N -0.59 -12.48 3.03 -164.06 -0.50 -12.98 16 17 C -0.26 -5.87 7.06 -15.06 -0.11 -5.97 16 18 H 0.07 1.66 5.82 -52.49 -0.31 1.36 16 19 C 0.01 0.26 5.06 -17.43 -0.09 0.17 16 20 N -0.90 -22.42 11.13 55.49 0.62 -21.81 16 21 Si 0.90 19.22 29.57 -169.99 -5.03 14.19 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H 0.09 0.79 7.57 -51.93 -0.39 0.40 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.42 6.80 6.74 -40.82 -0.28 6.53 16 29 H 0.07 1.27 7.56 -51.93 -0.39 0.88 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 2.18 6.32 -51.93 -0.33 1.85 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -28.75 309.39 -5.30 -34.05 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.06 Total: 4.87 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.27 Total: 13.69 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.68 Total: -52.91 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.29 Total: -18.55 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.75 -5.30 -34.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280399117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.025 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds