Wall clock time and date at job start Mon Mar 30 2020 00:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00333 * 2 1 4 4 C 1.50701 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.30454 * 125.98605 * 270.29753 * 4 3 2 6 6 N 1.39927 * 108.89563 * 180.15446 * 5 4 3 7 7 C 1.46498 * 125.75608 * 179.85374 * 6 5 4 8 8 C 1.34265 * 108.49129 * 359.58367 * 6 5 4 9 9 C 1.38047 * 107.41823 * 0.24652 * 8 6 5 10 10 C 1.47423 * 126.41721 * 179.97438 * 9 8 6 11 11 O 1.21600 * 120.00350 * 142.70341 * 10 9 8 12 12 N 1.34783 * 119.99730 * 322.70669 * 10 9 8 13 13 C 1.46497 * 120.00038 * 4.54729 * 12 10 9 14 14 C 1.46503 * 119.99884 * 184.54547 * 12 10 9 15 15 C 1.50701 * 109.46763 * 89.99927 * 14 12 10 16 16 H 1.07994 * 120.00026 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99455 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99570 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00426 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47389 * 89.99741 * 19 17 15 21 21 H 1.48500 * 109.47144 * 210.00077 * 19 17 15 22 22 H 1.48510 * 109.47011 * 329.99956 * 19 17 15 23 23 H 1.09000 * 109.47087 * 299.99991 * 1 2 3 24 24 H 1.09001 * 109.46773 * 59.99843 * 1 2 3 25 25 H 1.09001 * 109.47243 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46697 * 59.99898 * 3 2 1 27 27 H 1.08995 * 109.46789 * 300.00241 * 3 2 1 28 28 H 1.09004 * 109.46979 * 269.69249 * 7 6 5 29 29 H 1.08996 * 109.46966 * 29.68650 * 7 6 5 30 30 H 1.09000 * 109.47675 * 149.69079 * 7 6 5 31 31 H 1.07996 * 126.29040 * 180.22050 * 8 6 5 32 32 H 1.08994 * 109.47358 * 84.81040 * 13 12 10 33 33 H 1.09004 * 109.47145 * 204.81040 * 13 12 10 34 34 H 1.08998 * 109.47157 * 324.80635 * 13 12 10 35 35 H 1.08996 * 109.46767 * 210.00146 * 14 12 10 36 36 H 1.09000 * 109.47188 * 330.00108 * 14 12 10 37 37 H 0.97009 * 119.99736 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2767 1.1202 1.0546 6 7 5.6103 1.0203 0.6429 7 6 6.7746 0.9274 1.5272 8 6 5.6425 1.0178 -0.6994 9 6 4.3397 1.1211 -1.1442 10 6 3.8949 1.1570 -2.5492 11 8 2.8652 0.5985 -2.8755 12 7 4.6296 1.8088 -3.4722 13 6 5.9192 2.3962 -3.1005 14 6 4.1387 1.9298 -4.8472 15 6 3.3185 3.1872 -4.9789 16 1 3.1768 3.8315 -4.1238 17 6 2.7482 3.5145 -6.1908 18 7 2.0320 4.6116 -6.3055 19 14 2.9916 2.3991 -7.6692 20 1 1.9038 1.3890 -7.7117 21 1 2.9619 3.2111 -8.9122 22 1 4.3027 1.7102 -7.5591 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 7.1448 1.9289 1.7467 29 1 6.4870 0.4348 2.4559 30 1 7.5582 0.3497 1.0369 31 1 6.5253 0.9483 -1.3175 32 1 6.6972 1.6358 -3.1660 33 1 6.1543 3.2159 -3.7795 34 1 5.8655 2.7742 -2.0796 35 1 4.9851 1.9746 -5.5326 36 1 3.5202 1.0656 -5.0896 37 1 1.6311 4.8420 -7.1583 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292176661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:47 Heat of formation + Delta-G solvation = -15.259206 kcal Electronic energy + Delta-G solvation = -20662.049108 eV Core-core repulsion = 17441.143396 eV Total energy + Delta-G solvation = -3220.905712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.52151 -40.11139 -38.78531 -36.57703 -34.72074 -34.57386 -32.04259 -30.09843 -29.80276 -27.74284 -27.22919 -26.12826 -24.62454 -22.71064 -21.36892 -20.14856 -19.10383 -18.09451 -17.64207 -17.31061 -16.94465 -16.71829 -16.38687 -16.18538 -16.04193 -15.57558 -14.91755 -14.65485 -14.26084 -13.85142 -13.62546 -13.59571 -13.45828 -13.26392 -13.20607 -13.01152 -12.73115 -12.41994 -12.37555 -12.01513 -11.91832 -11.72130 -10.83093 -10.80164 -10.65637 -10.48241 -9.68725 -9.31381 -8.31691 -6.36779 0.60158 0.92966 1.34978 1.40081 1.42327 1.48140 2.13791 2.33698 2.50455 3.01343 3.03139 3.38572 3.69765 3.96651 4.03873 4.19141 4.30897 4.41735 4.46363 4.48689 4.50831 4.56000 4.66678 4.74331 4.78310 4.79630 4.85100 4.97766 5.00490 5.23564 5.48430 5.66730 5.91803 6.10586 6.27611 6.45161 6.64533 6.74549 7.23906 7.47748 8.85408 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.006026 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.061588 B = 4645.612362 C = 5666.116637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.148 3.852 4 C 0.100 3.900 5 N -0.300 5.300 6 N -0.351 5.351 7 C 0.085 3.915 8 C 0.118 3.882 9 C -0.297 4.297 10 C 0.576 3.424 11 O -0.587 6.587 12 N -0.602 5.602 13 C 0.073 3.927 14 C 0.225 3.775 15 C -0.536 4.536 16 H 0.026 0.974 17 C 0.011 3.989 18 N -0.947 5.947 19 Si 0.949 3.051 20 H -0.278 1.278 21 H -0.275 1.275 22 H -0.234 1.234 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -7.919 14.695 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C 0.070 3.930 4 C -0.066 4.066 5 N -0.125 5.125 6 N -0.130 5.130 7 C -0.053 4.053 8 C -0.034 4.034 9 C -0.312 4.312 10 C 0.365 3.635 11 O -0.468 6.468 12 N -0.333 5.333 13 C -0.069 4.069 14 C 0.102 3.898 15 C -0.575 4.575 16 H 0.044 0.956 17 C -0.187 4.187 18 N -0.587 5.587 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.200 1.200 22 H -0.157 1.157 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.248 0.752 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.499 -8.275 15.791 21.773 hybrid contribution -0.915 0.388 -1.704 1.972 sum 11.583 -7.887 14.087 19.870 Atomic orbital electron populations 1.22931 0.78993 1.04101 1.00665 1.87865 1.21797 1.26896 1.95509 1.20471 0.85805 0.85688 1.01046 1.21929 0.95753 0.98970 0.89958 1.76995 0.88141 1.25248 1.22078 1.48748 1.06111 1.52699 1.05478 1.22516 0.82574 1.05717 0.94484 1.23725 0.98369 0.96017 0.85247 1.20249 0.94486 1.23353 0.93076 1.17770 0.82916 0.78078 0.84712 1.90704 1.26717 1.47707 1.81706 1.47761 1.21525 1.53677 1.10325 1.22176 0.83382 0.99381 1.01927 1.19372 0.95104 0.95099 0.80195 1.21572 1.32236 1.07271 0.96391 0.95589 1.25855 0.93939 0.96613 1.02245 1.70061 1.35270 1.26612 1.26738 0.85706 0.80565 0.78681 0.77941 1.20382 1.19993 1.15731 0.91750 0.94817 0.87850 0.89867 0.93496 0.88187 0.88542 0.85397 0.75151 0.88962 0.91011 0.90557 0.92538 0.96268 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -15.21 10.69 -148.98 -1.59 -16.80 16 3 C 0.15 5.48 5.96 71.24 0.42 5.91 16 4 C 0.10 3.67 6.89 43.51 0.30 3.97 16 5 N -0.30 -9.38 12.50 -46.68 -0.58 -9.96 16 6 N -0.35 -7.72 3.98 -367.78 -1.46 -9.18 16 7 C 0.09 0.75 11.44 127.77 1.46 2.22 16 8 C 0.12 2.77 9.21 84.28 0.78 3.54 16 9 C -0.30 -10.70 5.38 -20.15 -0.11 -10.80 16 10 C 0.58 26.04 7.37 86.66 0.64 26.67 16 11 O -0.59 -32.28 15.88 -4.03 -0.06 -32.34 16 12 N -0.60 -25.36 2.86 -855.06 -2.44 -27.80 16 13 C 0.07 2.05 9.03 127.77 1.15 3.20 16 14 C 0.22 11.12 4.24 85.63 0.36 11.48 16 15 C -0.54 -32.08 9.94 25.60 0.25 -31.83 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 17 C 0.01 0.67 5.47 84.65 0.46 1.14 16 18 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 19 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.23 -9.79 6.54 99.48 0.65 -9.14 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.05 1.99 7.70 -2.39 -0.02 1.97 16 28 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.13 0.24 8.14 -2.39 -0.02 0.23 16 31 H 0.23 3.05 6.26 -2.91 -0.02 3.03 16 32 H 0.09 1.68 7.32 -2.39 -0.02 1.66 16 33 H 0.07 2.10 8.03 -2.38 -0.02 2.08 16 34 H 0.08 1.90 5.89 -2.39 -0.01 1.88 16 35 H 0.06 2.49 7.13 -2.39 -0.02 2.48 16 36 H 0.02 1.03 6.79 -2.39 -0.02 1.01 16 37 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -89.49 316.50 4.03 -85.47 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.01 Total: 6.59 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.97 Total: 17.58 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -4.19 Total: -107.11 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -1.66 Total: -49.14 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -89.49 4.03 -85.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292176661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.208 kcal (2) G-P(sol) polarization free energy of solvation -89.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds