Wall clock time and date at job start Mon Mar 30 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30865 * 125.89536 * 2 1 4 4 C 1.33632 * 109.77543 * 180.02562 * 3 2 1 5 5 N 1.39886 * 125.60227 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99859 * 179.97438 * 5 4 3 7 7 O 1.21580 * 119.99771 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99811 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47043 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47109 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47365 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99892 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00432 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99693 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00171 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46823 * 90.00142 * 16 14 12 18 18 H 1.48494 * 109.47227 * 209.99781 * 16 14 12 19 19 H 1.48501 * 109.47178 * 330.00325 * 16 14 12 20 20 N 1.31168 * 108.79411 * 359.70952 * 4 3 2 21 21 N 1.34364 * 125.90284 * 179.97438 * 2 1 3 22 22 C 1.46506 * 126.76300 * 0.02562 * 21 2 1 23 23 H 1.09001 * 109.47075 * 270.00191 * 1 2 3 24 24 H 1.09000 * 109.47134 * 30.00740 * 1 2 3 25 25 H 1.09000 * 109.46609 * 150.00732 * 1 2 3 26 26 H 0.97001 * 120.00346 * 359.97438 * 5 4 3 27 27 H 0.97005 * 119.99860 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.46985 * 299.99666 * 9 8 6 29 29 H 1.09001 * 109.46787 * 60.00034 * 9 8 6 30 30 H 1.08995 * 109.47024 * 300.00520 * 10 9 8 31 31 H 1.09004 * 109.46818 * 60.00033 * 10 9 8 32 32 H 1.09008 * 109.47467 * 300.00413 * 11 10 9 33 33 H 1.08996 * 109.47352 * 60.00050 * 11 10 9 34 34 H 0.96996 * 119.99447 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47060 * 90.00410 * 22 21 2 36 36 H 1.09004 * 109.47073 * 209.99899 * 22 21 2 37 37 H 1.09000 * 109.47212 * 329.99982 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0601 0.0000 4 6 3.5581 0.6891 -0.0006 5 7 4.6562 1.5557 -0.0002 6 6 5.9083 1.0568 -0.0003 7 8 6.0833 -0.1464 -0.0012 8 7 6.9663 1.8917 0.0005 9 6 8.3273 1.3495 -0.0002 10 6 9.3350 2.5008 0.0004 11 6 10.7563 1.9345 0.0003 12 6 11.7488 3.0685 0.0015 13 1 11.4007 4.0909 0.0018 14 6 13.1014 2.8008 0.0011 15 7 13.5253 1.5559 0.0002 16 14 14.3317 4.2065 0.0018 17 1 14.6579 4.5780 1.4022 18 1 15.5699 3.7809 -0.6986 19 1 13.7451 5.3780 -0.6973 20 7 3.6193 -0.6211 0.0054 21 7 2.2950 -1.0884 0.0005 22 6 1.8585 -2.4869 0.0006 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8901 -0.5137 26 1 4.5166 2.5156 0.0001 27 1 6.8266 2.8516 0.0016 28 1 8.4747 0.7367 0.8891 29 1 8.4745 0.7386 -0.8909 30 1 9.1874 3.1132 -0.8891 31 1 9.1878 3.1120 0.8909 32 1 10.9036 1.3223 0.8900 33 1 10.9037 1.3231 -0.8899 34 1 14.4768 1.3676 -0.0005 35 1 1.7507 -2.8339 -1.0271 36 1 2.5996 -3.0988 0.5148 37 1 0.9005 -2.5685 0.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310807128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:46 Heat of formation + Delta-G solvation = 59.840332 kcal Electronic energy + Delta-G solvation = -19187.848581 eV Core-core repulsion = 16002.492181 eV Total energy + Delta-G solvation = -3185.356400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.29799 -39.87469 -35.89166 -35.00934 -33.55420 -33.21216 -32.46616 -31.01769 -28.77230 -27.14756 -26.26554 -23.56319 -22.10334 -21.15534 -20.69358 -19.95303 -18.24948 -17.54158 -16.55400 -16.38008 -16.02246 -15.49532 -14.80192 -14.41405 -14.37748 -14.21461 -13.85582 -13.77835 -13.63758 -13.18097 -12.87199 -12.27683 -11.81813 -11.80047 -11.75054 -10.94723 -10.82355 -10.72296 -10.58488 -10.28227 -10.01554 -9.86239 -9.83922 -9.44864 -9.11695 -8.94964 -8.55804 -8.35797 -6.00469 -4.03505 1.46689 1.90210 2.51828 2.59829 3.32026 3.38341 3.41190 3.49022 3.86939 4.08823 4.33404 4.46015 4.69103 4.82287 4.98494 5.08471 5.18692 5.28939 5.35332 5.41829 5.68908 5.80953 6.15241 6.18162 6.42546 6.46898 6.62248 6.68239 6.70260 6.90990 7.01555 7.65223 7.76851 7.77807 7.98457 8.19157 8.39101 8.61222 9.03186 9.60569 11.10853 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.065882 B = 0.002589 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.900641 B =10811.805907 C =11200.352030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.287 3.713 3 N -0.559 5.559 4 C 0.460 3.540 5 N -0.639 5.639 6 C 0.699 3.301 7 O -0.546 6.546 8 N -0.732 5.732 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.287 5.287 21 N -0.385 5.385 22 C 0.099 3.901 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.418 0.582 27 H 0.397 0.603 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.463 -3.371 0.062 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 N -0.293 5.293 4 C 0.089 3.911 5 N -0.296 5.296 6 C 0.397 3.603 7 O -0.417 6.417 8 N -0.387 5.387 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.122 5.122 21 N -0.177 5.177 22 C -0.043 4.043 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.102 0.898 26 H 0.256 0.744 27 H 0.230 0.770 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.460 -4.761 0.061 27.870 hybrid contribution 0.500 1.577 0.002 1.654 sum -26.961 -3.184 0.063 27.148 Atomic orbital electron populations 1.20380 0.83630 1.04937 1.04454 1.24125 0.96404 0.82103 0.96318 1.70086 0.99749 1.29762 1.29717 1.19930 0.85987 0.87124 0.98078 1.41655 1.01555 1.08802 1.77580 1.15877 0.79592 0.86016 0.78771 1.91041 1.83571 1.12493 1.54618 1.45322 1.05557 1.08991 1.78841 1.21608 0.77267 0.97669 1.02211 1.21904 0.96806 0.96139 1.00999 1.19031 0.88109 0.96510 0.97751 1.21200 0.91019 0.92893 1.50912 0.92622 1.25036 0.98641 0.95540 0.95304 1.69968 1.14723 1.18016 1.50561 0.86575 0.80790 0.82421 0.78081 1.20667 1.21226 1.19896 1.78962 0.94042 1.08984 1.30230 1.50264 1.03972 1.07726 1.55772 1.21910 1.01254 0.77358 1.03804 0.89028 0.88411 0.89823 0.74441 0.76957 0.91638 0.91644 0.92612 0.92619 0.96200 0.96190 0.92929 0.90250 0.88720 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.00 36.01 0.36 0.04 16 2 C 0.29 2.95 7.98 -155.72 -1.24 1.71 16 3 N -0.56 -7.45 11.21 -11.07 -0.12 -7.58 16 4 C 0.46 7.17 8.83 -320.82 -2.83 4.34 16 5 N -0.64 -8.99 5.44 -17.22 -0.09 -9.09 16 6 C 0.70 11.82 8.53 -86.91 -0.74 11.08 16 7 O -0.55 -11.61 15.03 5.29 0.08 -11.53 16 8 N -0.73 -10.98 5.56 -65.22 -0.36 -11.35 16 9 C 0.14 2.44 5.67 -4.04 -0.02 2.42 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 N -0.29 -4.79 10.88 30.04 0.33 -4.46 16 21 N -0.38 -4.42 4.03 -65.10 -0.26 -4.69 16 22 C 0.10 0.61 11.15 59.85 0.67 1.27 16 23 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.16 7.75 -51.93 -0.40 -0.25 16 26 H 0.42 4.32 8.84 -40.82 -0.36 3.96 16 27 H 0.40 4.60 8.49 -40.82 -0.35 4.26 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.22 7.70 -51.93 -0.40 -0.18 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -38.23 323.50 -9.63 -47.86 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.28 Total: 0.25 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -4.50 Total: 5.38 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.22 Total: -63.43 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -38.23 -9.63 -47.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310807128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.698 kcal (2) G-P(sol) polarization free energy of solvation -38.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds