Wall clock time and date at job start Mon Mar 30 2020 00:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 C 1.41379 * 126.80391 * 124.70841 * 10 9 8 12 12 C 1.35452 * 103.98315 * 179.89111 * 11 10 9 13 13 O 1.34036 * 106.44568 * 0.37093 * 12 11 10 14 14 N 1.20917 * 111.57261 * 359.74961 * 13 12 11 15 15 N 1.46506 * 109.46609 * 119.99404 * 2 1 3 16 16 C 1.36937 * 119.99934 * 274.99832 * 15 2 1 17 17 H 1.07998 * 120.00035 * 0.02562 * 16 15 2 18 18 C 1.38810 * 120.00229 * 180.02562 * 16 15 2 19 19 N 1.31626 * 119.99636 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00308 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47420 * 89.99861 * 20 18 16 22 22 H 1.48504 * 109.47183 * 210.00218 * 20 18 16 23 23 H 1.48504 * 109.46991 * 329.99840 * 20 18 16 24 24 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 25 25 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 26 26 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 28 28 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 31 31 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 32 32 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 33 33 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 34 34 H 1.08001 * 128.00433 * 0.03099 * 11 10 9 35 35 H 1.08007 * 126.77149 * 180.09628 * 12 11 10 36 36 H 0.97000 * 120.00390 * 95.00648 * 15 2 1 37 37 H 0.97001 * 119.99765 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 6 8.4488 -3.5738 -3.3969 12 6 9.7299 -3.1473 -3.2886 13 8 9.6755 -1.8163 -3.1405 14 7 8.5354 -1.4137 -3.1534 15 7 2.0183 -0.6905 1.1963 16 6 2.1490 -0.0073 2.3758 17 1 1.8918 1.0405 2.4243 18 6 2.6121 -0.6613 3.5092 19 7 2.9250 -1.9385 3.4503 20 14 2.7898 0.2705 5.1184 21 1 1.5221 0.1785 5.8863 22 1 3.8948 -0.3220 5.9141 23 1 3.0938 1.6960 4.8339 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5136 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7518 -0.1585 -2.1369 28 1 1.6055 -1.7199 -1.2949 29 1 3.9825 -0.4627 -0.4313 30 1 6.1124 -0.5505 -2.0802 31 1 5.9587 -2.1092 -1.2348 32 1 5.7455 -3.2702 -3.4159 33 1 5.8992 -1.7110 -4.2607 34 1 8.0932 -4.5855 -3.5246 35 1 10.6194 -3.7596 -3.3119 36 1 2.2490 -1.6317 1.1529 37 1 3.2483 -2.3957 4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317253834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:07 Heat of formation + Delta-G solvation = 22.095207 kcal Electronic energy + Delta-G solvation = -19602.205884 eV Core-core repulsion = 16382.919980 eV Total energy + Delta-G solvation = -3219.285903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.06271 -39.43120 -36.43788 -35.32179 -33.52344 -32.32226 -31.85002 -31.14354 -28.75822 -26.61558 -24.56008 -23.56012 -23.27678 -20.97019 -20.20793 -19.70303 -17.99730 -17.67237 -17.40968 -16.53725 -15.69594 -15.65962 -15.05014 -14.77621 -14.12551 -13.80927 -13.61818 -13.26074 -13.07291 -12.65262 -12.27837 -12.17439 -12.08361 -11.99707 -11.62103 -11.38241 -11.03598 -10.89838 -10.76671 -10.37487 -10.18339 -10.03475 -9.80933 -9.74150 -9.51894 -9.00728 -8.61842 -7.06851 -5.84142 -3.14416 1.35790 2.08907 2.94896 3.12181 3.38763 3.44595 3.45833 3.56659 4.07550 4.41679 4.52735 4.90692 5.00893 5.08568 5.14811 5.30739 5.42210 5.46389 5.51799 5.56667 5.61719 5.82420 5.91120 5.94233 6.05833 6.08397 6.17501 6.31885 6.54980 6.74029 6.84281 7.03424 7.63664 7.94190 8.14140 8.33488 8.57014 9.45418 10.00190 10.35915 11.37863 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.004004 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.069472 B = 6992.189129 C = 8194.748513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.512 3.488 7 O -0.558 6.558 8 C -0.137 4.137 9 C -0.024 4.024 10 C 0.020 3.980 11 C -0.231 4.231 12 C -0.063 4.063 13 O 0.097 5.903 14 N -0.363 5.363 15 N -0.724 5.724 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.411 0.589 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.215 0.785 36 H 0.385 0.615 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 -2.110 -13.428 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.298 3.702 7 O -0.438 6.438 8 C -0.178 4.178 9 C -0.062 4.062 10 C -0.139 4.139 11 C -0.252 4.252 12 C -0.145 4.145 13 O 0.031 5.969 14 N -0.067 5.067 15 N -0.367 5.367 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.248 0.752 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.189 0.811 35 H 0.232 0.768 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.606 -0.965 -13.799 16.841 hybrid contribution 0.242 -0.730 1.351 1.555 sum 9.848 -1.694 -12.448 15.963 Atomic orbital electron populations 1.22362 0.98312 1.01270 1.00365 1.20516 0.92686 0.95755 0.86175 0.92880 1.21683 0.79628 1.01076 0.98595 1.46004 1.08295 1.58434 1.23538 1.20466 0.89620 0.77682 0.82394 1.90658 1.70533 1.48841 1.33763 1.21594 0.92874 1.03385 0.99909 1.19724 0.84643 1.03186 0.98673 1.23755 0.98651 0.89158 1.02319 1.22808 0.92470 1.00909 1.09015 1.26021 1.00658 0.84683 1.03105 1.84843 1.23566 1.22015 1.66482 1.73851 0.89782 1.23874 1.19200 1.42477 1.78100 1.10826 1.05256 1.19230 1.36911 0.93922 0.87359 0.91104 1.24741 1.01963 0.95923 0.98030 1.69668 1.50598 1.08656 1.28939 0.86210 0.77311 0.78814 0.83940 1.21725 1.21798 1.20731 0.92334 0.94182 0.93209 0.91879 0.91863 0.75247 0.88542 0.88486 0.88763 0.89158 0.81061 0.76805 0.78096 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.47 16 2 C 0.16 2.99 3.05 -67.93 -0.21 2.78 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C 0.11 1.97 5.23 -4.04 -0.02 1.95 16 5 N -0.71 -11.91 5.39 -60.30 -0.32 -12.24 16 6 C 0.51 8.33 7.83 -10.98 -0.09 8.25 16 7 O -0.56 -10.52 15.98 5.55 0.09 -10.43 16 8 C -0.14 -1.82 5.67 -27.89 -0.16 -1.97 16 9 C -0.02 -0.29 5.10 -27.89 -0.14 -0.43 16 10 C 0.02 0.24 6.59 -82.10 -0.54 -0.30 16 11 C -0.23 -2.09 11.12 -39.38 -0.44 -2.52 16 12 C -0.06 -0.48 12.30 29.74 0.37 -0.11 16 13 O 0.10 1.06 11.20 17.19 0.19 1.26 16 14 N -0.36 -4.73 12.06 33.42 0.40 -4.33 16 15 N -0.72 -17.01 4.56 -53.42 -0.24 -17.25 16 16 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 20 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.41 7.01 8.14 -40.82 -0.33 6.68 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 33 H 0.09 1.13 8.10 -51.92 -0.42 0.71 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.22 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.39 9.79 7.80 -40.82 -0.32 9.47 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -31.70 324.39 -5.68 -37.38 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.26 Total: 12.16 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.12 Total: -1.77 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.56 Total: -60.20 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.28 Total: -9.17 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.70 -5.68 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317253834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.473 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds