Wall clock time and date at job start Mon Mar 30 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 C 1.41379 * 126.80391 * 124.70841 * 10 9 8 12 12 C 1.35452 * 103.98315 * 179.89111 * 11 10 9 13 13 O 1.34036 * 106.44568 * 0.37093 * 12 11 10 14 14 N 1.20917 * 111.57261 * 359.74961 * 13 12 11 15 15 N 1.46506 * 109.46609 * 119.99404 * 2 1 3 16 16 C 1.36937 * 119.99934 * 274.99832 * 15 2 1 17 17 H 1.07998 * 120.00035 * 0.02562 * 16 15 2 18 18 C 1.38810 * 120.00229 * 180.02562 * 16 15 2 19 19 N 1.31626 * 119.99636 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00308 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47420 * 89.99861 * 20 18 16 22 22 H 1.48504 * 109.47183 * 210.00218 * 20 18 16 23 23 H 1.48504 * 109.46991 * 329.99840 * 20 18 16 24 24 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 25 25 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 26 26 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 28 28 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 31 31 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 32 32 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 33 33 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 34 34 H 1.08001 * 128.00433 * 0.03099 * 11 10 9 35 35 H 1.08007 * 126.77149 * 180.09628 * 12 11 10 36 36 H 0.97000 * 120.00390 * 95.00648 * 15 2 1 37 37 H 0.97001 * 119.99765 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 6 8.4488 -3.5738 -3.3969 12 6 9.7299 -3.1473 -3.2886 13 8 9.6755 -1.8163 -3.1405 14 7 8.5354 -1.4137 -3.1534 15 7 2.0183 -0.6905 1.1963 16 6 2.1490 -0.0073 2.3758 17 1 1.8918 1.0405 2.4243 18 6 2.6121 -0.6613 3.5092 19 7 2.9250 -1.9385 3.4503 20 14 2.7898 0.2705 5.1184 21 1 1.5221 0.1785 5.8863 22 1 3.8948 -0.3220 5.9141 23 1 3.0938 1.6960 4.8339 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5136 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7518 -0.1585 -2.1369 28 1 1.6055 -1.7199 -1.2949 29 1 3.9825 -0.4627 -0.4313 30 1 6.1124 -0.5505 -2.0802 31 1 5.9587 -2.1092 -1.2348 32 1 5.7455 -3.2702 -3.4159 33 1 5.8992 -1.7110 -4.2607 34 1 8.0932 -4.5855 -3.5246 35 1 10.6194 -3.7596 -3.3119 36 1 2.2490 -1.6317 1.1529 37 1 3.2483 -2.3957 4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317253834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:06 Heat of formation + Delta-G solvation = 0.154604 kcal Electronic energy + Delta-G solvation = -19603.157299 eV Core-core repulsion = 16382.919980 eV Total energy + Delta-G solvation = -3220.237319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.86191 -40.78241 -37.99863 -36.27584 -35.18000 -33.68931 -33.01574 -32.11868 -30.56021 -27.86830 -25.99524 -25.27908 -24.03479 -21.85441 -21.73364 -20.97658 -19.36106 -18.80165 -18.49273 -17.80795 -17.15005 -16.94234 -16.54066 -15.84808 -15.66180 -15.31013 -14.81127 -14.60075 -14.16285 -13.95100 -13.67442 -13.44733 -13.34031 -13.28636 -13.04763 -12.79220 -12.61533 -12.49135 -12.19328 -11.97176 -11.71604 -11.65379 -11.09677 -10.98881 -10.80495 -10.51114 -10.01540 -9.03235 -7.92531 -5.21481 0.66956 1.30837 1.49653 1.50358 1.58218 1.62934 2.27988 2.53693 2.57462 3.23574 3.41941 3.61395 3.80757 3.88836 3.98734 4.08135 4.21332 4.32869 4.39637 4.51434 4.63510 4.64315 4.72690 4.74526 4.87211 4.93064 5.05337 5.05911 5.20720 5.25424 5.41571 5.55816 5.59934 6.28511 6.57924 7.22559 7.35964 7.39648 8.08091 8.32807 9.30264 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.004004 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.069472 B = 6992.189129 C = 8194.748513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.058 0.942 4 C 0.123 3.877 5 N -0.713 5.713 6 C 0.513 3.487 7 O -0.584 6.584 8 C -0.127 4.127 9 C -0.018 4.018 10 C 0.002 3.998 11 C -0.244 4.244 12 C -0.043 4.043 13 O 0.087 5.913 14 N -0.398 5.398 15 N -0.732 5.732 16 C -0.236 4.236 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.967 3.033 21 H -0.292 1.292 22 H -0.299 1.299 23 H -0.269 1.269 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.410 0.590 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.194 0.806 35 H 0.263 0.737 36 H 0.373 0.627 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.915 -1.832 -13.999 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.076 0.924 4 C -0.002 4.002 5 N -0.364 5.364 6 C 0.300 3.700 7 O -0.465 6.465 8 C -0.167 4.167 9 C -0.056 4.056 10 C -0.156 4.156 11 C -0.265 4.265 12 C -0.124 4.124 13 O 0.022 5.978 14 N -0.104 5.104 15 N -0.373 5.373 16 C -0.368 4.368 17 H 0.095 0.905 18 C -0.262 4.262 19 N -0.618 5.618 20 Si 0.797 3.203 21 H -0.220 1.220 22 H -0.226 1.226 23 H -0.194 1.194 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.246 0.754 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.211 0.789 35 H 0.279 0.721 36 H 0.205 0.795 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.356 -0.642 -14.400 17.749 hybrid contribution 0.007 -0.815 1.435 1.650 sum 10.363 -1.457 -12.965 16.662 Atomic orbital electron populations 1.22239 0.96758 1.01189 1.01368 1.20687 0.93628 0.95599 0.85085 0.92375 1.21571 0.79897 1.00432 0.98286 1.46042 1.08196 1.58521 1.23622 1.20915 0.90698 0.76737 0.81627 1.90642 1.71329 1.49872 1.34672 1.21536 0.90539 1.03933 1.00713 1.19616 0.85401 1.02976 0.97625 1.23867 0.98353 0.90390 1.03031 1.23155 0.92716 1.01136 1.09492 1.26905 1.01900 0.83401 1.00182 1.84790 1.22751 1.23802 1.66474 1.73847 0.90604 1.25069 1.20851 1.42605 1.78369 1.10326 1.06033 1.19579 1.34793 0.94208 0.88172 0.90473 1.25443 1.03007 0.96708 1.01060 1.69814 1.52562 1.10128 1.29252 0.85241 0.76595 0.78205 0.80293 1.21970 1.22586 1.19386 0.93673 0.90789 0.93856 0.90139 0.93008 0.75397 0.88051 0.88184 0.88446 0.89944 0.78884 0.72097 0.79492 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.49 71.98 0.68 -4.46 16 2 C 0.16 5.78 3.05 44.99 0.14 5.92 16 3 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 4 C 0.12 4.09 5.23 86.38 0.45 4.54 16 5 N -0.71 -23.57 5.39 -463.07 -2.49 -26.07 16 6 C 0.51 16.54 7.83 87.66 0.69 17.22 16 7 O -0.58 -21.82 15.98 -3.04 -0.05 -21.87 16 8 C -0.13 -3.34 5.67 29.85 0.17 -3.17 16 9 C -0.02 -0.43 5.10 29.85 0.15 -0.28 16 10 C 0.00 0.04 6.59 43.58 0.29 0.32 16 11 C -0.24 -3.94 11.12 22.40 0.25 -3.69 16 12 C -0.04 -0.54 12.30 67.18 0.83 0.29 16 13 O 0.09 1.79 11.20 71.68 0.80 2.60 16 14 N -0.40 -10.19 12.06 -49.56 -0.60 -10.78 16 15 N -0.73 -34.20 4.56 -322.93 -1.47 -35.67 16 16 C -0.24 -12.26 9.93 84.03 0.83 -11.43 16 17 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 19 N -0.97 -57.00 13.06 21.65 0.28 -56.72 16 20 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 27 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.41 13.88 8.14 -92.71 -0.75 13.13 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 32 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 33 H 0.08 2.09 8.10 -2.38 -0.02 2.07 16 34 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.26 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.37 19.16 7.80 -92.71 -0.72 18.43 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -67.96 324.39 3.05 -64.91 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.39 Total: 35.00 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.94 Total: 1.93 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -4.28 Total: -129.24 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.75 Total: -19.28 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.96 3.05 -64.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317253834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.066 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds